mRNA_M-pyrifera_M_contig65581.15940.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig65581.15940.1
Unique NamemRNA_M-pyrifera_M_contig65581.15940.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig65581.15940.1 vs. uniprot
Match: A0A2E6D8J3_9BACT (Uncharacterized protein n=2 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2E6D8J3_9BACT)

HSP 1 Score: 198 bits (504), Expect = 1.260e-53
Identity = 118/302 (39.07%), Postives = 178/302 (58.94%), Query Frame = 1 
Query:  106 QDSQADALLDDRWQVLTLAEQKKSFLLDQYMANAEDLRSRARLEDAYAEVQKALMLEPDYLPAKKLKAELGNLLGKPGDVAAGTLDDAIGRTDLKQQQLYLTGKANMDRGKAALQRGDYDEAIAEFTLAQNHIRWAPA-IDWKGIDQEAQTLLEKAKAEKAAAKENAEMEKRRAAFEALQQXXXXXXXXXXAVTAALVEDAIAAFQMGDYDLAQEKAEAALKNSPRNSQAQDIADAAFRAAHDQANEDYLRRKREKYAEWELEMRRISVPISSDFVAPSEEFWNEITELRANRDGLDLTETI 1008
            QD  AD  LDD  + L + +QK+ FLL+ ++  AE+L+ + RL++A AE  +AL +E D L AK+L AE+GNL+G+     A   +    +  ++ +Q++   + ++D GK AL RG+YD AIAE TL    +R AP  I+W G+D EA+ LL +AK ++    E   ++  RAA   LQ           A+TA+++  AI AF   DYD A +  + AL+ SPR+ QA  I DAAFRA  ++   DY+  KRE++A W   ++ + VP +     P  E W  +TELRA+R G+DL+ T+
Sbjct:   62 QDPAAD--LDDEAKRLDIRQQKQRFLLEGHLMRAEELKQQGRLDEAMAEANQALAIERDSLTAKRLAAEIGNLMGQDSGRWASVAEMLGEQHKIRLEQIHSDAQDSLDDGKLALGRGEYDAAIAELTLTLTFVRNAPYNIEWNGLDTEAEALLARAKTDRTNNIERERVDAERAAHSELQAAEQGERERREAITASMITQAIDAFDRADYDTAMDFTDQALRRSPRDQQAVAIRDAAFRAGREKVRADYIVDKREEFARWREHLQELQVPWTDVITLPDPEDWRALTELRASRQGIDLSRTV 361
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BLAST of mRNA_M-pyrifera_M_contig65581.15940.1 vs. uniprot
Match: A0A2D6HG30_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D6HG30_9BACT)

HSP 1 Score: 197 bits (501), Expect = 3.390e-53
Identity = 118/288 (40.97%), Postives = 175/288 (60.76%), Query Frame = 1 
Query:  145 QVLTLAEQKKSFLLDQYMANAEDLRSRARLEDAYAEVQKALMLEPDYLPAKKLKAELGNLLGKPGDVAAGTLDDAIGRTD----LKQQQLYLTGKANMDRGKAALQRGDYDEAIAEFTLAQNHIRWAP-AIDWKGIDQEAQTLLEKAKAEKAAAKENAEMEKRRAAFEALQQXXXXXXXXXXAVTAALVEDAIAAFQMGDYDLAQEKAEAALKNSPRNSQAQDIADAAFRAAHDQANEDYLRRKREKYAEWELEMRRISVPISSDFVAPSEEFWNEITELRANRDGLD 993
            +VL L EQ+++FL++Q++ANA+ LR   RLEDA  E+  AL  +PD L  K + AE+  L+G   D   G +    G  +    L+ QQL +  + ++ +GK+ L RGDYD AIA+FT+A NHIRWAP +I+W  +D EA  LLE+AK+++ A++E   + ++RAA+E L+           AV + ++E A+ AF+  +YD A   A+ AL+  PRN QAQDI  +AF+A   Q   +Y+ RKRE+YA W   M    +P       P  + W EI+ELR +R G+D
Sbjct:   80 EVLALKEQRRAFLVEQHVANAQALRESLRLEDARRELLAALEHDPDNLALKDILAEVSALIG---DDFGGEISSVSGEMNRIYQLRVQQLVIEAEDSIRKGKSELARGDYDAAIAQFTIALNHIRWAPYSINWGTLDSEAAALLERAKSDRTASEEATLVAQQRAAYEQLRAQEEREQTRDQAVLSNMLEQAMEAFEQEEYDDAMYFADEALRKDPRNDQAQDIRTSAFKAGRKQVRAEYVERKREQYAVWRERMDAARIPWDDVITLPDPDRWAEISELRGSRQGID 364
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BLAST of mRNA_M-pyrifera_M_contig65581.15940.1 vs. uniprot
Match: A0A521KRU9_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A521KRU9_9BACT)

HSP 1 Score: 182 bits (463), Expect = 5.140e-48
Identity = 116/299 (38.80%), Postives = 176/299 (58.86%), Query Frame = 1 
Query:   94 SAPVQDSQADALLDDRWQVLTLAEQKKSFLLDQYMANAEDLRSRARLEDAYAEVQKALMLEPDYLPAKKLKAELGNLLGKPGDVAAGTLDDAIGRTDLKQQQLYLTGKANMDRGKAALQRGDYDEAIAEFTLAQNHIRWAP-AIDWKGIDQEAQTLLEKAKAEKAAAKENAEMEKRRAAFEALQQXXXXXXXXXXAVTAALVEDAIAAFQMGDYDLAQEKAEAALKNSPRNSQAQDIADAAFRAAHDQANEDYLRRKREKYAEWELEMRRISVPISSDFVAPSEEFWNEITELRANRDG 987
            +APV   QA   L++ W  L+L EQKK  L+DQ++ANA+   ++  L +A  E   AL ++ D   AK   AE+ +L+GK     A    +     +L+ QQL L  + ++ +G+  + RGD+D AI E +LA + +RWA  ++DWKG+D++A++LLE+A+ E+ +A + A  + ++ A+E L+ XXXXX     A+   +V  AI AF+ GDYD A + A+ AL   P N +A D+ D AFRA   +AN  YLR+K+E +  W  EM  + V  +     P EE W  IT+LR  R G
Sbjct:   51 AAPVAQDQA---LNEEWAKLSLREQKKRLLVDQHLANADAFLAKLMLSEAEGEALGALEVDADSPKAKAKLAEIRSLMGKSSTEIATIQQELARAHELRVQQLRLDTEESVKKGRLMIARGDHDAAITELSLALDRVRWAQYSLDWKGLDKQAESLLEQARRERESAGQAALAKSQQKAYEQLKXXXXXXAARNAAMVDEMVAQAIEAFESGDYDGAMKFADEALAEDPSNEKAADVRDTAFRAGRQRANATYLRQKKELFQTWREEMEELRVTYTDIITPPDEEHWQRITDLRGKRTG 346
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BLAST of mRNA_M-pyrifera_M_contig65581.15940.1 vs. uniprot
Match: A0A7Y4WKD7_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7Y4WKD7_9BACT)

HSP 1 Score: 172 bits (437), Expect = 1.730e-44
Identity = 106/279 (37.99%), Postives = 152/279 (54.48%), Query Frame = 1 
Query:  154 TLAEQKKSFLLDQYMANAEDLRSRARLEDAYAEVQKALMLEPDYLPAKKLKAELGNLLGKPGDVAAGTLDDAIGRTDLKQQQLYLTGKANMDRGKAALQRGDYDEAIAEFTLAQNHIRWAP-AIDWKGIDQEAQTLLEKAKAEKAAAK--ENAEMEKRRAAFEALQQXXXXXXXXXXAVTAALVEDAIAAFQMGDYDLAQEKAEAALKNSPRNSQAQDIADAAFRAAHDQANEDYLRRKREKYAEWELEMRRISVPISSDFVAPSEEFWNEITELRANR 981
            TLAEQKK FL+D ++  A +L+ R  LE A  E+ KAL L+PD L AK + +E+G LLG+       T+ +   +  LK+ QL +  +  +D+   A QRGDYD A+ E TLA + IRW+P + DW+ + QE + L+  AK +K AA+  E A  EK   A  AL+            V   L+  AI AFQ  DYD   E A+  ++  PRN +A+D+ D AFR       + YLR K  +Y  W+ ++  + VP       P +++W  IT  RA R
Sbjct:   61 TLAEQKKGFLVDSHLQRASELKERLELEQAEQELAKALQLDPDNLEAKSMLSEVGALLGRAPGETQTTIQELASKAQLKKDQLEIDARQKVDKANLAQQRGDYDGALIELTLALDQIRWSPYSGDWQALQQEIEVLIAAAKQKKQAAETVERAGAEKEARA--ALRTQEQEEQQHRAEVVNNLLSQAITAFQTEDYDQTIELADRVVRLDPRNERARDLRDTAFRKGRKLVQDTYLREKLAEYQRWQEDLDELRVPYQGVITLPDQDYWRNITATRAAR 337
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig65581.15940.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2E6D8J3_9BACT1.260e-5339.07Uncharacterized protein n=2 Tax=Planctomycetes bac... [more]
A0A2D6HG30_9BACT3.390e-5340.97Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A521KRU9_9BACT5.140e-4838.80Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A7Y4WKD7_9BACT1.730e-4437.99Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig65581contigM-pyrifera_M_contig65581:10..1017 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1008
Cds size1008
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816543.7557356-CDS-M-pyrifera_M_contig65581:9..10171622816543.7557356-CDS-M-pyrifera_M_contig65581:9..1017Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65581 10..1017 -
1692278037.5397167-CDS-M-pyrifera_M_contig65581:9..10171692278037.5397167-CDS-M-pyrifera_M_contig65581:9..1017Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65581 10..1017 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig65581.15940.1prot_M-pyrifera_M_contig65581.15940.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig65581 10..1017 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig65581.15940.1

>prot_M-pyrifera_M_contig65581.15940.1 ID=prot_M-pyrifera_M_contig65581.15940.1|Name=mRNA_M-pyrifera_M_contig65581.15940.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=336bp
AGCSSPAPTDQAPEPSSPAETPETNYEVVEASAPVQDSQADALLDDRWQV
LTLAEQKKSFLLDQYMANAEDLRSRARLEDAYAEVQKALMLEPDYLPAKK
LKAELGNLLGKPGDVAAGTLDDAIGRTDLKQQQLYLTGKANMDRGKAALQ
RGDYDEAIAEFTLAQNHIRWAPAIDWKGIDQEAQTLLEKAKAEKAAAKEN
AEMEKRRAAFEALQQESAEAKARDAAVTAALVEDAIAAFQMGDYDLAQEK
AEAALKNSPRNSQAQDIADAAFRAAHDQANEDYLRRKREKYAEWELEMRR
ISVPISSDFVAPSEEFWNEITELRANRDGLDLTETI
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mRNA from alignment at M-pyrifera_M_contig65581:10..1017-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig65581.15940.1 ID=mRNA_M-pyrifera_M_contig65581.15940.1|Name=mRNA_M-pyrifera_M_contig65581.15940.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1008bp|location=Sequence derived from alignment at M-pyrifera_M_contig65581:10..1017- (Macrocystis pyrifera P11B4 male)
GCCGGTTGTTCCTCCCCCGCCCCCACGGATCAGGCGCCCGAGCCGTCCTC
CCCGGCGGAAACCCCTGAGACCAACTACGAAGTCGTCGAGGCTTCCGCTC
CGGTCCAGGACTCCCAGGCCGACGCGCTGCTCGACGACCGCTGGCAGGTC
CTGACCCTGGCGGAGCAGAAGAAGTCCTTCCTGCTCGACCAGTACATGGC
GAACGCCGAGGACCTGCGCAGCCGCGCGCGCCTCGAGGACGCCTACGCCG
AGGTCCAGAAGGCGCTCATGCTCGAGCCCGACTACCTCCCGGCCAAGAAG
CTCAAGGCCGAGCTCGGCAACCTGCTCGGCAAGCCGGGTGACGTCGCCGC
CGGCACGCTAGACGATGCGATCGGTCGCACCGACCTCAAGCAACAGCAGC
TGTACCTGACGGGCAAGGCCAACATGGACCGCGGCAAGGCCGCGCTCCAG
CGCGGCGACTACGACGAGGCCATCGCCGAGTTCACGCTCGCGCAGAACCA
CATCCGCTGGGCGCCGGCGATCGACTGGAAGGGGATCGATCAAGAGGCCC
AGACGCTGCTCGAAAAGGCCAAGGCCGAGAAGGCCGCCGCCAAGGAGAAC
GCCGAGATGGAGAAGCGCCGCGCGGCGTTCGAGGCGCTCCAGCAGGAGAG
CGCCGAGGCCAAGGCGCGCGACGCCGCCGTCACCGCGGCGCTGGTCGAGG
ACGCGATCGCGGCCTTCCAGATGGGCGACTACGACCTGGCCCAGGAGAAG
GCCGAGGCCGCGCTCAAGAACTCGCCGCGCAACTCCCAGGCCCAGGACAT
CGCCGACGCGGCCTTCCGCGCGGCCCACGACCAGGCCAACGAGGACTACC
TGCGCCGCAAGCGTGAGAAGTACGCCGAGTGGGAGCTCGAGATGCGCCGC
ATCTCCGTCCCGATCAGCTCCGACTTCGTCGCCCCCAGCGAGGAGTTCTG
GAACGAGATCACCGAGCTGCGCGCCAACCGTGACGGCCTCGACCTGACCG
AGACGATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig65581:10..1017-

>mRNA_M-pyrifera_M_contig65581.15940.1 ID=mRNA_M-pyrifera_M_contig65581.15940.1|Name=mRNA_M-pyrifera_M_contig65581.15940.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2016bp|location=Sequence derived from alignment at M-pyrifera_M_contig65581:10..1017- (Macrocystis pyrifera P11B4 male)
GCCGGTTGTTCCTCCCCCGCCCCCACGGATCAGGCGCCCGAGCCGTCCTC
CCCGGCGGAAACCCCTGAGACCAACTACGAAGTCGTCGAGGCTTCCGCTC
CGGTCCAGGACTCCCAGGCCGACGCGCTGCTCGACGACCGCTGGCAGGTC
CTGACCCTGGCGGAGCAGAAGAAGTCCTTCCTGCTCGACCAGTACATGGC
GAACGCCGAGGACCTGCGCAGCCGCGCGCGCCTCGAGGACGCCTACGCCG
AGGTCCAGAAGGCGCTCATGCTCGAGCCCGACTACCTCCCGGCCAAGAAG
CTCAAGGCCGAGCTCGGCAACCTGCTCGGCAAGCCGGGTGACGTCGCCGC
CGGCACGCTAGACGATGCGATCGGTCGCACCGACCTCAAGCAACAGCAGC
TGTACCTGACGGGCAAGGCCAACATGGACCGCGGCAAGGCCGCGCTCCAG
CGCGGCGACTACGACGAGGCCATCGCCGAGTTCACGCTCGCGCAGAACCA
CATCCGCTGGGCGCCGGCGATCGACTGGAAGGGGATCGATCAAGAGGCCC
AGACGCTGCTCGAAAAGGCCAAGGCCGAGAAGGCCGCCGCCAAGGAGAAC
GCCGAGATGGAGAAGCGCCGCGCGGCGTTCGAGGCGCTCCAGCAGGAGAG
CGCCGAGGCCAAGGCGCGCGACGCCGCCGTCACCGCGGCGCTGGTCGAGG
ACGCGATCGCGGCCTTCCAGATGGGCGACTACGACCTGGCCCAGGAGAAG
GCCGAGGCCGCGCTCAAGAACTCGCCGCGCAACTCCCAGGCCCAGGACAT
CGCCGACGCGGCCTTCCGCGCGGCCCACGACCAGGCCAACGAGGACTACC
TGCGCCGCAAGCGTGAGAAGTACGCCGAGTGGGAGCTCGAGATGCGCCGC
ATCTCCGTCCCGATCAGCTCCGACTTCGTCGCCCCCAGCGAGGAGTTCTG
GAACGAGATCACCGAGCTGCGCGCCAACCGTGACGGCCTCGACCTGACCG
AGACGATCGCCGGTTGTTCCTCCCCCGCCCCCACGGATCAGGCGCCCGAG
CCGTCCTCCCCGGCGGAAACCCCTGAGACCAACTACGAAGTCGTCGAGGC
TTCCGCTCCGGTCCAGGACTCCCAGGCCGACGCGCTGCTCGACGACCGCT
GGCAGGTCCTGACCCTGGCGGAGCAGAAGAAGTCCTTCCTGCTCGACCAG
TACATGGCGAACGCCGAGGACCTGCGCAGCCGCGCGCGCCTCGAGGACGC
CTACGCCGAGGTCCAGAAGGCGCTCATGCTCGAGCCCGACTACCTCCCGG
CCAAGAAGCTCAAGGCCGAGCTCGGCAACCTGCTCGGCAAGCCGGGTGAC
GTCGCCGCCGGCACGCTAGACGATGCGATCGGTCGCACCGACCTCAAGCA
ACAGCAGCTGTACCTGACGGGCAAGGCCAACATGGACCGCGGCAAGGCCG
CGCTCCAGCGCGGCGACTACGACGAGGCCATCGCCGAGTTCACGCTCGCG
CAGAACCACATCCGCTGGGCGCCGGCGATCGACTGGAAGGGGATCGATCA
AGAGGCCCAGACGCTGCTCGAAAAGGCCAAGGCCGAGAAGGCCGCCGCCA
AGGAGAACGCCGAGATGGAGAAGCGCCGCGCGGCGTTCGAGGCGCTCCAG
CAGGAGAGCGCCGAGGCCAAGGCGCGCGACGCCGCCGTCACCGCGGCGCT
GGTCGAGGACGCGATCGCGGCCTTCCAGATGGGCGACTACGACCTGGCCC
AGGAGAAGGCCGAGGCCGCGCTCAAGAACTCGCCGCGCAACTCCCAGGCC
CAGGACATCGCCGACGCGGCCTTCCGCGCGGCCCACGACCAGGCCAACGA
GGACTACCTGCGCCGCAAGCGTGAGAAGTACGCCGAGTGGGAGCTCGAGA
TGCGCCGCATCTCCGTCCCGATCAGCTCCGACTTCGTCGCCCCCAGCGAG
GAGTTCTGGAACGAGATCACCGAGCTGCGCGCCAACCGTGACGGCCTCGA
CCTGACCGAGACGATC
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