mRNA_M-pyrifera_M_contig65578.15938.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig65578.15938.1
Unique NamemRNA_M-pyrifera_M_contig65578.15938.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig65578.15938.1 vs. uniprot
Match: A0A7S2UUK6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUK6_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 8.640e-6
Identity = 24/46 (52.17%), Postives = 31/46 (67.39%), Query Frame = 1 
Query:   19 DASKANVRVKDVVRAVNGNPCPSYDSLIAIIGAVGRPVQVEFQRLG 156
            + SKANV   DV+  V GN   +YD ++A+I A+GRPV V FQR G
Sbjct:   43 EGSKANVERGDVIVGVEGNAVSTYDDVLAVIQALGRPVTVNFQRPG 88
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig65578.15938.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S2UUK6_9STRA8.640e-652.17Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig65578contigM-pyrifera_M_contig65578:277..432 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size156
Cds size156
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816543.6842425-CDS-M-pyrifera_M_contig65578:276..4321622816543.6842425-CDS-M-pyrifera_M_contig65578:276..432Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65578 277..432 -
1692278037.5151293-CDS-M-pyrifera_M_contig65578:276..4321692278037.5151293-CDS-M-pyrifera_M_contig65578:276..432Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65578 277..432 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig65578.15938.1prot_M-pyrifera_M_contig65578.15938.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig65578 277..432 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig65578.15938.1

>prot_M-pyrifera_M_contig65578.15938.1 ID=prot_M-pyrifera_M_contig65578.15938.1|Name=mRNA_M-pyrifera_M_contig65578.15938.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=52bp
AVKAGGDASKANVRVKDVVRAVNGNPCPSYDSLIAIIGAVGRPVQVEFQR
LG
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mRNA from alignment at M-pyrifera_M_contig65578:277..432-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig65578.15938.1 ID=mRNA_M-pyrifera_M_contig65578.15938.1|Name=mRNA_M-pyrifera_M_contig65578.15938.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=156bp|location=Sequence derived from alignment at M-pyrifera_M_contig65578:277..432- (Macrocystis pyrifera P11B4 male)
GCAGTGAAAGCAGGCGGTGACGCCTCTAAGGCGAACGTACGCGTGAAAGA
CGTCGTAAGAGCCGTCAACGGTAACCCGTGCCCCTCCTATGACAGTTTAA
TCGCGATTATCGGTGCCGTCGGCCGGCCCGTCCAAGTGGAGTTCCAACGG
CTTGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig65578:277..432-

>mRNA_M-pyrifera_M_contig65578.15938.1 ID=mRNA_M-pyrifera_M_contig65578.15938.1|Name=mRNA_M-pyrifera_M_contig65578.15938.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig65578:277..432- (Macrocystis pyrifera P11B4 male)
GCAGTGAAAGCAGGCGGTGACGCCTCTAAGGCGAACGTACGCGTGAAAGA
CGTCGTAAGAGCCGTCAACGGTAACCCGTGCCCCTCCTATGACAGTTTAA
TCGCGATTATCGGTGCCGTCGGCCGGCCCGTCCAAGTGGAGTTCCAACGG
CTTGGCGCAGTGAAAGCAGGCGGTGACGCCTCTAAGGCGAACGTACGCGT
GAAAGACGTCGTAAGAGCCGTCAACGGTAACCCGTGCCCCTCCTATGACA
GTTTAATCGCGATTATCGGTGCCGTCGGCCGGCCCGTCCAAGTGGAGTTC
CAACGGCTTGGC
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