mRNA_M-pyrifera_M_contig65577.15937.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig65577.15937.1
Unique NamemRNA_M-pyrifera_M_contig65577.15937.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig65577.15937.1 vs. uniprot
Match: D7FNJ2_ECTSI (Clathrin light chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNJ2_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 6.550e-22
Identity = 69/112 (61.61%), Postives = 79/112 (70.54%), Query Frame = 1 
Query:    4 VARRQARSREQEEAFLKGVTASVEESASNPWARVCDLVDLKAPILSV-STASARSGXXXXXXXXRSGXXXRKGSXXXXXXXXXXXXXXXXXGMAEEDAFQATAKMRSLIIQV 336
            VARRQARSREQEE FLKGV+AS+EES SNPWAR+CDLVDLK P++S  S+ SA +GXXXXXXXX      RKGS                 GM EE+ F+AT KMRSLIIQ+
Sbjct:  166 VARRQARSREQEETFLKGVSASIEESTSNPWARICDLVDLKKPVISAKSSFSAGAGXXXXXXXXXX----RKGSATAQS------------GMEEEEVFRATEKMRSLIIQM 261
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig65577.15937.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNJ2_ECTSI6.550e-2261.61Clathrin light chain n=2 Tax=Ectocarpus TaxID=2879... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig65577contigM-pyrifera_M_contig65577:726..1061 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionClathrin light chain
Ec32 orthologEc-01_005240.1
Exons1
Model size336
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816543.6400752-CDS-M-pyrifera_M_contig65577:725..10611622816543.6400752-CDS-M-pyrifera_M_contig65577:725..1061Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65577 726..1061 +
1692278037.5012283-CDS-M-pyrifera_M_contig65577:725..10611692278037.5012283-CDS-M-pyrifera_M_contig65577:725..1061Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65577 726..1061 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig65577.15937.1prot_M-pyrifera_M_contig65577.15937.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig65577 726..1061 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig65577.15937.1

>prot_M-pyrifera_M_contig65577.15937.1 ID=prot_M-pyrifera_M_contig65577.15937.1|Name=mRNA_M-pyrifera_M_contig65577.15937.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=112bp
KVARRQARSREQEEAFLKGVTASVEESASNPWARVCDLVDLKAPILSVST
ASARSGGGGGGGGSRSGGGGRKGSGSSGSRSGSRRGSGAGGGMAEEDAFQ
ATAKMRSLIIQV
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mRNA from alignment at M-pyrifera_M_contig65577:726..1061+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig65577.15937.1 ID=mRNA_M-pyrifera_M_contig65577.15937.1|Name=mRNA_M-pyrifera_M_contig65577.15937.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=336bp|location=Sequence derived from alignment at M-pyrifera_M_contig65577:726..1061+ (Macrocystis pyrifera P11B4 male)
AAGGTGGCACGGAGGCAAGCCCGTAGCCGCGAGCAAGAGGAGGCGTTCCT
GAAGGGAGTAACCGCCTCGGTCGAAGAGTCCGCCTCCAACCCTTGGGCGA
GGGTGTGCGACTTGGTGGACTTGAAGGCTCCCATCCTGTCCGTGTCTACG
GCCTCCGCGCGAAGCGGGGGTGGGGGAGGGGGCGGCGGTAGTCGTAGTGG
TGGCGGTGGCCGCAAGGGAAGCGGCAGCAGCGGCAGCCGCAGCGGCAGCC
GGAGGGGTTCGGGGGCCGGGGGGGGGATGGCGGAGGAGGACGCCTTCCAA
GCGACGGCGAAGATGAGATCGCTCATCATCCAGGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig65577:726..1061+

>mRNA_M-pyrifera_M_contig65577.15937.1 ID=mRNA_M-pyrifera_M_contig65577.15937.1|Name=mRNA_M-pyrifera_M_contig65577.15937.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=672bp|location=Sequence derived from alignment at M-pyrifera_M_contig65577:726..1061+ (Macrocystis pyrifera P11B4 male)
AAGGTGGCACGGAGGCAAGCCCGTAGCCGCGAGCAAGAGGAGGCGTTCCT
GAAGGGAGTAACCGCCTCGGTCGAAGAGTCCGCCTCCAACCCTTGGGCGA
GGGTGTGCGACTTGGTGGACTTGAAGGCTCCCATCCTGTCCGTGTCTACG
GCCTCCGCGCGAAGCGGGGGTGGGGGAGGGGGCGGCGGTAGTCGTAGTGG
TGGCGGTGGCCGCAAGGGAAGCGGCAGCAGCGGCAGCCGCAGCGGCAGCC
GGAGGGGTTCGGGGGCCGGGGGGGGGATGGCGGAGGAGGACGCCTTCCAA
GCGACGGCGAAGATGAGATCGCTCATCATCCAGGTGAAGGTGGCACGGAG
GCAAGCCCGTAGCCGCGAGCAAGAGGAGGCGTTCCTGAAGGGAGTAACCG
CCTCGGTCGAAGAGTCCGCCTCCAACCCTTGGGCGAGGGTGTGCGACTTG
GTGGACTTGAAGGCTCCCATCCTGTCCGTGTCTACGGCCTCCGCGCGAAG
CGGGGGTGGGGGAGGGGGCGGCGGTAGTCGTAGTGGTGGCGGTGGCCGCA
AGGGAAGCGGCAGCAGCGGCAGCCGCAGCGGCAGCCGGAGGGGTTCGGGG
GCCGGGGGGGGGATGGCGGAGGAGGACGCCTTCCAAGCGACGGCGAAGAT
GAGATCGCTCATCATCCAGGTG
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