mRNA_M-pyrifera_M_contig65548.15933.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig65548.15933.1
Unique NamemRNA_M-pyrifera_M_contig65548.15933.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig65548.15933.1 vs. uniprot
Match: A0A078ARV8_STYLE (Dynein heavy chain family protein n=2 Tax=Oxytrichidae TaxID=57506 RepID=A0A078ARV8_STYLE)

HSP 1 Score: 77.4 bits (189), Expect = 2.930e-14
Identity = 43/110 (39.09%), Postives = 66/110 (60.00%), Query Frame = 1
Query:    7 VGLWLVSCGGIREELASKYDTIADAFTEMIAERATTKSQEITKAFRVMEKRLGQHPRDIEQLTEIKDFSAAVPDRVKELVSQTNKNNELYDILDSFGTMLPK-EQFDLKW 333
            V ++ VSC  IR  LA K+  IA+   E+IA+RA  ++ EI  AF  M  ++   PRDIE+LT IKD+ +A+P+ +++L+       ++YDIL  F     + E +D KW
Sbjct:  658 VSIFKVSCKEIRATLAQKHTKIANDQIELIAKRAKLQADEILIAFEKMNNKIESAPRDIEELTSIKDYMSAIPNEIEKLMPDLKTCMQIYDILSQFNYRFHQDEDYDEKW 767          
BLAST of mRNA_M-pyrifera_M_contig65548.15933.1 vs. uniprot
Match: A0A7S3X943_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3X943_9SPIT)

HSP 1 Score: 68.6 bits (166), Expect = 1.610e-12
Identity = 37/110 (33.64%), Postives = 67/110 (60.91%), Query Frame = 1
Query:    7 VGLWLVSCGGIREELASKYDTIADAFTEMIAERATTKSQEITKAFRVMEKRLGQHPRDIEQLTEIKDFSAAVPDRVKELVSQTNKNNELYDILDSFGTMLPKEQ-FDLKW 333
            V ++ V+C  IR  LA K+  IA    E+IA+ A  K+ + T+AF  +  ++  +P+DIE+L+ IKD  A+VP+ +++L  + N+   +Y+ L+ F    P++  +D +W
Sbjct:    2 VSMFKVNCKEIRNALADKHAKIARDMIELIAKMAKQKANDTTQAFENINLQIEANPKDIEELSAIKDLMASVPNEIEKLNGRINECMNIYNTLNEFQYTFPEDDDYDKQW 111          
BLAST of mRNA_M-pyrifera_M_contig65548.15933.1 vs. uniprot
Match: A0A812UY05_9DINO (DNAH1 protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812UY05_9DINO)

HSP 1 Score: 68.2 bits (165), Expect = 4.980e-11
Identity = 34/109 (31.19%), Postives = 63/109 (57.80%), Query Frame = 1
Query:    7 VGLWLVSCGGIREELASKYDTIADAFTEMIAERATTKSQEITKAFRVMEKRLGQHPRDIEQLTEIKDFSAAVPDRVKELVSQTNKNNELYDILDSFGTMLPKEQFDLKW 333
            VGL+ VSC  IR+ LA K+  I +   +M+  +    +QEIT A+  +  +L + P+DIE++T ++++ A +P  + ++   T +  + Y +L+ FG  L  + F  +W
Sbjct:  813 VGLFEVSCQEIRKTLAGKHRKIQELLLDMMMTKFRDGTQEITDAYAGVFSQLRKSPKDIEEVTAMREYIATIPAEIMKMAPDTKRCLDTYSVLEEFGVQLTADDFYQRW 921          
BLAST of mRNA_M-pyrifera_M_contig65548.15933.1 vs. uniprot
Match: A0A812UTI3_9DINO (Dnah1 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812UTI3_9DINO)

HSP 1 Score: 68.2 bits (165), Expect = 5.100e-11
Identity = 34/109 (31.19%), Postives = 63/109 (57.80%), Query Frame = 1
Query:    7 VGLWLVSCGGIREELASKYDTIADAFTEMIAERATTKSQEITKAFRVMEKRLGQHPRDIEQLTEIKDFSAAVPDRVKELVSQTNKNNELYDILDSFGTMLPKEQFDLKW 333
            VGL+ VSC  IR+ LA K+  I +   +M+  +    +QEIT A+  +  +L + P+DIE++T ++++ A +P  + ++   T +  + Y +L+ FG  L  + F  +W
Sbjct:  540 VGLFEVSCNEIRKTLAGKHRKIQELLLDMMMTKFRDGTQEITDAYAGVFSQLRKSPKDIEEVTAMREYIATIPAEILKMAPDTKRCLDTYGVLEEFGVQLTADDFYQRW 648          
BLAST of mRNA_M-pyrifera_M_contig65548.15933.1 vs. uniprot
Match: A0A812L546_SYMMI (DNAH1 protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812L546_SYMMI)

HSP 1 Score: 67.8 bits (164), Expect = 6.690e-11
Identity = 34/109 (31.19%), Postives = 63/109 (57.80%), Query Frame = 1
Query:    7 VGLWLVSCGGIREELASKYDTIADAFTEMIAERATTKSQEITKAFRVMEKRLGQHPRDIEQLTEIKDFSAAVPDRVKELVSQTNKNNELYDILDSFGTMLPKEQFDLKW 333
            VGL+ VSC  IR+ LA K+  I +   +M+  +    +QEIT A+  +  +L + P+DIE++T ++++ A +P  + ++   T +  + Y +L+ FG  L  + F  +W
Sbjct:  842 VGLFEVSCQEIRKTLAGKHRKIQELLLDMMMTKFRDGTQEITDAYAGVFSQLRKSPKDIEEVTAMREYIATIPAEILKMAPDTKRCLDTYSVLEEFGVQLTADDFYQRW 950          
BLAST of mRNA_M-pyrifera_M_contig65548.15933.1 vs. uniprot
Match: A0A813C1W1_9DINO (DNAH1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813C1W1_9DINO)

HSP 1 Score: 67.8 bits (164), Expect = 6.820e-11
Identity = 34/109 (31.19%), Postives = 63/109 (57.80%), Query Frame = 1
Query:    7 VGLWLVSCGGIREELASKYDTIADAFTEMIAERATTKSQEITKAFRVMEKRLGQHPRDIEQLTEIKDFSAAVPDRVKELVSQTNKNNELYDILDSFGTMLPKEQFDLKW 333
            VGL+ VSC  IR+ LA K+  I +   +M+  +    +QEIT A+  +  +L + P+DIE++T ++++ A +P  + ++   T +  + Y +L+ FG  L  + F  +W
Sbjct:  809 VGLFEVSCQEIRKTLAGKHRKIQELLLDMMMTKFRDGTQEITDAYAGVFSQLRKSPKDIEEVTAMREYIATIPAEILKMAPDTKRCLDTYSVLEEFGVQLTADDFYQRW 917          
BLAST of mRNA_M-pyrifera_M_contig65548.15933.1 vs. uniprot
Match: A0A1R2BKP3_9CILI (Uncharacterized protein n=2 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2BKP3_9CILI)

HSP 1 Score: 64.7 bits (156), Expect = 8.390e-10
Identity = 32/111 (28.83%), Postives = 61/111 (54.95%), Query Frame = 1
Query:    1 VDVGLWLVSCGGIREELASKYDTIADAFTEMIAERATTKSQEITKAFRVMEKRLGQHPRDIEQLTEIKDFSAAVPDRVKELVSQTNKNNELYDILDSFGTMLPKEQFDLKW 333
            + V  + V C  +R  L+ K+ +      EMIA++A   + ++ + FR M + + + P+DIE+LTEIKD+ + VP  ++++  +  +N   + IL+ F      +  + KW
Sbjct:  687 IRVSCFEVHCKEVRNTLSGKHVSFVKHLIEMIAQKARDATVKMLEEFRKMHREISKPPKDIEELTEIKDYISRVPVEIEKMKQEIEQNMSTFGILEKFQYRFTNDDMNKKW 797          
BLAST of mRNA_M-pyrifera_M_contig65548.15933.1 vs. uniprot
Match: A0A0G4F7Q5_VITBC (Uncharacterized protein n=5 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F7Q5_VITBC)

HSP 1 Score: 62.8 bits (151), Expect = 3.970e-9
Identity = 31/109 (28.44%), Postives = 66/109 (60.55%), Query Frame = 1
Query:    7 VGLWLVSCGGIREELASKYDTIADAFTEMIAERATTKSQEITKAFRVMEKRLGQHPRDIEQLTEIKDFSAAVPDRVKELVSQTNKNNELYDILDSFGTMLPKEQFDLKW 333
            +GL+ +SC  IR+ L  K  ++A    +++A R   +   + ++F+ M  +L + P++IE+L+E++++ A++P  V++L  + N N +L+ IL++F   L  +    +W
Sbjct:  669 IGLFQLSCKEIRKLLGGKLHSLAGLMQDVLAVRLREQCATVLESFQGMYVQLRKSPKNIEELSELREYMASLPAEVEKLTVEINANIDLFSILENFRYKLSADDHHTRW 777          
BLAST of mRNA_M-pyrifera_M_contig65548.15933.1 vs. uniprot
Match: A0A2C6LHA8_9APIC (Dynein heavy chain axonemal protein (Fragment) n=1 Tax=Cystoisospora suis TaxID=483139 RepID=A0A2C6LHA8_9APIC)

HSP 1 Score: 62.0 bits (149), Expect = 7.200e-9
Identity = 32/111 (28.83%), Postives = 60/111 (54.05%), Query Frame = 1
Query:    1 VDVGLWLVSCGGIREELASKYDTIADAFTEMIAERATTKSQEITKAFRVMEKRLGQHPRDIEQLTEIKDFSAAVPDRVKELVSQTNKNNELYDILDSFGTMLPKEQFDLKW 333
            + +G + +SC  I+  LA K  T+     ++IA+R   +  +    FR +   L + PR+IE+LTE+K+F + +P +++ L      N   ++IL+ F   L  E  +++W
Sbjct:  427 ITIGAFRISCSDIKRFLALKLHTVGSLILDVIAKRFRDQCTQTLDHFRGIFATLKKRPRNIEELTEMKEFISDIPSKLERLAYDIKSNLHTFEILEEFKYKLYVEDHNIRW 537          
BLAST of mRNA_M-pyrifera_M_contig65548.15933.1 vs. uniprot
Match: A0A8C3H3F8_9CORV (Dynein axonemal heavy chain 1 n=1 Tax=Corvus moneduloides TaxID=1196302 RepID=A0A8C3H3F8_9CORV)

HSP 1 Score: 62.0 bits (149), Expect = 7.400e-9
Identity = 31/109 (28.44%), Postives = 66/109 (60.55%), Query Frame = 1
Query:    7 VGLWLVSCGGIREELASKYDTIADAFTEMIAERATTKSQEITKAFRVMEKRLGQHPRDIEQLTEIKDFSAAVPDRVKELVSQTNKNNELYDILDSFGTMLPKEQFDLKW 333
            +G + V    IR +L+ K+  +A A  +M+A+   ++ Q+I +A+  +  ++ + P++IE+LTE++D+   VP+++ +L+ +  ++   Y ++D F   L +E F  KW
Sbjct:  727 IGPFQVRIEHIRHDLSDKHKALATAMLDMLAKTLHSQVQKICEAYETVSVKMHEKPKNIEELTELRDWLKGVPEQLAQLIEEVMED---YKVMDDFFYSLTEEDFTDKW 832          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig65548.15933.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A078ARV8_STYLE2.930e-1439.09Dynein heavy chain family protein n=2 Tax=Oxytrich... [more]
A0A7S3X943_9SPIT1.610e-1233.64Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A812UY05_9DINO4.980e-1131.19DNAH1 protein n=1 Tax=Symbiodinium sp. CCMP2456 Ta... [more]
A0A812UTI3_9DINO5.100e-1131.19Dnah1 protein n=1 Tax=Symbiodinium natans TaxID=87... [more]
A0A812L546_SYMMI6.690e-1131.19DNAH1 protein n=2 Tax=Symbiodinium TaxID=2949 RepI... [more]
A0A813C1W1_9DINO6.820e-1131.19DNAH1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
A0A1R2BKP3_9CILI8.390e-1028.83Uncharacterized protein n=2 Tax=Stentor coeruleus ... [more]
A0A0G4F7Q5_VITBC3.970e-928.44Uncharacterized protein n=5 Tax=Vitrella brassicaf... [more]
A0A2C6LHA8_9APIC7.200e-928.83Dynein heavy chain axonemal protein (Fragment) n=1... [more]
A0A8C3H3F8_9CORV7.400e-928.44Dynein axonemal heavy chain 1 n=1 Tax=Corvus moned... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig65548contigM-pyrifera_M_contig65548:929..1261 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.0
Seed ortholog evalue6.1e-12
Seed eggNOG ortholog5888.CAK71564
KEGG koko:K10408
KEGG Pathwayko05016,map05016
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Encoded by
EggNOG OGs3ZCWP@5878,COG5245@1,KOG3595@2759
COG Functional cat.Z
Best tax levelCiliophora
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Exons1
Model size333
Cds size333
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816543.4479957-CDS-M-pyrifera_M_contig65548:928..12611622816543.4479957-CDS-M-pyrifera_M_contig65548:928..1261Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65548 929..1261 -
1692278037.40139-CDS-M-pyrifera_M_contig65548:928..12611692278037.40139-CDS-M-pyrifera_M_contig65548:928..1261Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig65548 929..1261 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig65548.15933.1prot_M-pyrifera_M_contig65548.15933.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig65548 929..1261 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig65548.15933.1

>prot_M-pyrifera_M_contig65548.15933.1 ID=prot_M-pyrifera_M_contig65548.15933.1|Name=mRNA_M-pyrifera_M_contig65548.15933.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=111bp
VDVGLWLVSCGGIREELASKYDTIADAFTEMIAERATTKSQEITKAFRVM
EKRLGQHPRDIEQLTEIKDFSAAVPDRVKELVSQTNKNNELYDILDSFGT
MLPKEQFDLKW
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mRNA from alignment at M-pyrifera_M_contig65548:929..1261-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig65548.15933.1 ID=mRNA_M-pyrifera_M_contig65548.15933.1|Name=mRNA_M-pyrifera_M_contig65548.15933.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=333bp|location=Sequence derived from alignment at M-pyrifera_M_contig65548:929..1261- (Macrocystis pyrifera P11B4 male)
GTTGATGTGGGATTGTGGCTGGTGTCGTGTGGTGGGATTCGTGAAGAACT CGCTAGCAAGTATGACACGATTGCTGATGCATTCACAGAGATGATTGCAG AACGCGCGACTACGAAATCACAAGAAATCACCAAGGCTTTCCGTGTGATG GAGAAACGACTTGGACAACATCCACGTGATATCGAACAATTGACAGAGAT TAAGGATTTTTCTGCTGCTGTTCCTGATCGTGTCAAGGAGCTTGTGTCAC AAACCAACAAGAACAACGAGTTGTATGACATTCTTGATTCGTTTGGAACA ATGTTGCCAAAGGAGCAATTTGATCTCAAGTGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig65548:929..1261-

>mRNA_M-pyrifera_M_contig65548.15933.1 ID=mRNA_M-pyrifera_M_contig65548.15933.1|Name=mRNA_M-pyrifera_M_contig65548.15933.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=666bp|location=Sequence derived from alignment at M-pyrifera_M_contig65548:929..1261- (Macrocystis pyrifera P11B4 male)
GTTGATGTGGGATTGTGGCTGGTGTCGTGTGGTGGGATTCGTGAAGAACT
CGCTAGCAAGTATGACACGATTGCTGATGCATTCACAGAGATGATTGCAG
AACGCGCGACTACGAAATCACAAGAAATCACCAAGGCTTTCCGTGTGATG
GAGAAACGACTTGGACAACATCCACGTGATATCGAACAATTGACAGAGAT
TAAGGATTTTTCTGCTGCTGTTCCTGATCGTGTCAAGGAGCTTGTGTCAC
AAACCAACAAGAACAACGAGTTGTATGACATTCTTGATTCGTTTGGAACA
ATGTTGCCAAAGGAGCAATTTGATCTCAAGTGGGTTGATGTGGGATTGTG
GCTGGTGTCGTGTGGTGGGATTCGTGAAGAACTCGCTAGCAAGTATGACA
CGATTGCTGATGCATTCACAGAGATGATTGCAGAACGCGCGACTACGAAA
TCACAAGAAATCACCAAGGCTTTCCGTGTGATGGAGAAACGACTTGGACA
ACATCCACGTGATATCGAACAATTGACAGAGATTAAGGATTTTTCTGCTG
CTGTTCCTGATCGTGTCAAGGAGCTTGTGTCACAAACCAACAAGAACAAC
GAGTTGTATGACATTCTTGATTCGTTTGGAACAATGTTGCCAAAGGAGCA
ATTTGATCTCAAGTGG
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