mRNA_M-pyrifera_M_contig13894.6099.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13894.6099.1
Unique NamemRNA_M-pyrifera_M_contig13894.6099.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig13894.6099.1 vs. uniprot
Match: D7G6E8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6E8_ECTSI)

HSP 1 Score: 195 bits (495), Expect = 4.150e-59
Identity = 106/162 (65.43%), Postives = 133/162 (82.10%), Query Frame = 1 
Query:    1 RATLPVLVMGEEFPEVEPQRVAVARKPQERMTTSREQAKSAAA-REGKSKFSRSSILKIKELFDSIDKDGSGYVEEREWRRLTRDTALAASDDTVLLLERQREGEISIVEVLCEVHPRACDADLAKMLEWISEPT-RQGPGKAVSRELAMAERMEIAALFQM 480
            RATL  +V+GE+   +  QR A+ +KPQER + + E+ ++AAA REG+++F+RSSI+KIKE+FDSIDKDGSGYV+E EWRRLT DT LAASDDT L +ER+REG+ISIVEVLCEVHP A DADLAKMLEWISE T +QG  + V+ ELA+AER+E+A LF M
Sbjct:  154 RATLSAMVLGEDDAVMAAQRAALTKKPQERASVAVEKKRAAAAAREGRNRFARSSIMKIKEVFDSIDKDGSGYVDEEEWRRLTEDTPLAASDDTFLFIEREREGKISIVEVLCEVHPFAGDADLAKMLEWISEETIQQGAARIVNPELAVAERLEMAELFSM 315
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BLAST of mRNA_M-pyrifera_M_contig13894.6099.1 vs. uniprot
Match: A0A6H5JDE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDE5_9PHAE)

HSP 1 Score: 194 bits (494), Expect = 1.310e-57
Identity = 104/162 (64.20%), Postives = 134/162 (82.72%), Query Frame = 1 
Query:    1 RATLPVLVMGEEFPEVEPQRVAVARKPQERMTTSREQAKSAAA-REGKSKFSRSSILKIKELFDSIDKDGSGYVEEREWRRLTRDTALAASDDTVLLLERQREGEISIVEVLCEVHPRACDADLAKMLEWISEPT-RQGPGKAVSRELAMAERMEIAALFQM 480
            RATL  +V+GE+   +  QR A+ +KPQER + + E+ ++AAA REG+++F+RSSI+KIKE+FDS+DKDGSGYV+E EWRRLT DT LAASDDT L +ER+REG+ISIVEVLCE+HP A DADLAKMLEWISE T +QG  + V+RELA+AER+E+A LF +
Sbjct:  205 RATLSAMVLGEDDAVMAAQRAALTKKPQERASVAVEKKRAAAAAREGRNRFARSSIMKIKEVFDSVDKDGSGYVDEEEWRRLTEDTPLAASDDTFLFIEREREGKISIVEVLCELHPFAGDADLAKMLEWISEETTQQGAARKVNRELAVAERLEMAELFSI 366
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BLAST of mRNA_M-pyrifera_M_contig13894.6099.1 vs. uniprot
Match: A0A8J5XYB6_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XYB6_DIALT)

HSP 1 Score: 74.3 bits (181), Expect = 5.680e-13
Identity = 42/118 (35.59%), Postives = 70/118 (59.32%), Query Frame = 1 
Query:  130 REGKSKFSRSSILKIKELFDSIDKDGSGYVEEREWRRLTRDTALAASDDTVLL-LERQREGEISIVEVLCEVHPRACDADLAKMLEWISEPTRQGPGKAVSRELAMAERMEIAALFQM 480
            ++ KSK+S+S +L +K+++D  D+D SG V   E +   + +ALA S DT+L  L+R  +G +   E+L  ++P A   D A M+EW++ P    P     REL+ ++  EI A+F +
Sbjct:   93 KKAKSKYSKSDVLLLKQVYDEYDRDKSGSVSVAEMQLALKSSALAGSTDTMLSELDRNGDGSVDFHELLKLLYPFANATDFAAMVEWVAPPLPPAPPP--KRELSASQLEEIRAIFAL 208
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13894.6099.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G6E8_ECTSI4.150e-5965.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JDE5_9PHAE1.310e-5764.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8J5XYB6_DIALT5.680e-1335.59Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13894contigM-pyrifera_M_contig13894:227..4452 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEF-hand domain
Ec32 orthologEc-10_001590.1
Exons3
Model size483
Cds size459
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13894.6099.1prot_M-pyrifera_M_contig13894.6099.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13894 251..4452 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815828.53932-UTR-M-pyrifera_M_contig13894:226..2501622815828.53932-UTR-M-pyrifera_M_contig13894:226..250Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13894 227..250 +
1692277592.868093-UTR-M-pyrifera_M_contig13894:226..2501692277592.868093-UTR-M-pyrifera_M_contig13894:226..250Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13894 227..250 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815828.5517201-CDS-M-pyrifera_M_contig13894:250..4061622815828.5517201-CDS-M-pyrifera_M_contig13894:250..406Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13894 251..406 +
1692277592.8779721-CDS-M-pyrifera_M_contig13894:250..4061692277592.8779721-CDS-M-pyrifera_M_contig13894:250..406Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13894 251..406 +
1622815828.5633035-CDS-M-pyrifera_M_contig13894:1780..18971622815828.5633035-CDS-M-pyrifera_M_contig13894:1780..1897Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13894 1781..1897 +
1692277592.8867831-CDS-M-pyrifera_M_contig13894:1780..18971692277592.8867831-CDS-M-pyrifera_M_contig13894:1780..1897Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13894 1781..1897 +
1622815828.5724542-CDS-M-pyrifera_M_contig13894:4266..44521622815828.5724542-CDS-M-pyrifera_M_contig13894:4266..4452Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13894 4267..4452 +
1692277592.8973088-CDS-M-pyrifera_M_contig13894:4266..44521692277592.8973088-CDS-M-pyrifera_M_contig13894:4266..4452Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13894 4267..4452 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13894.6099.1

>prot_M-pyrifera_M_contig13894.6099.1 ID=prot_M-pyrifera_M_contig13894.6099.1|Name=mRNA_M-pyrifera_M_contig13894.6099.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=153bp
MGEEFPEVEPQRVAVARKPQERMTTSREQAKSAAAREGKSKFSRSSILKI
KELFDSIDKDGSGYVEEREWRRLTRDTALAASDDTVLLLERQREGEISIV
EVLCEVHPRACDADLAKMLEWISEPTRQGPGKAVSRELAMAERMEIAALF
QM*
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mRNA from alignment at M-pyrifera_M_contig13894:227..4452+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13894.6099.1 ID=mRNA_M-pyrifera_M_contig13894.6099.1|Name=mRNA_M-pyrifera_M_contig13894.6099.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=4226bp|location=Sequence derived from alignment at M-pyrifera_M_contig13894:227..4452+ (Macrocystis pyrifera P11B4 male)
AGAGCAACCCTTCCCGTTTTGGTGATGGGAGAAGAATTTCCGGAGGTAGA
GCCGCAACGGGTGGCGGTTGCCAGAAAGCCTCAGGAGCGGATGACGACAT
CTAGAGAGCAGGCGAAGTCGGCGGCGGCGAGAGAGGGCAAGAGCAAATTC
TCGCGATCGAGCATTTTGAAGATCAAAGAGGTCAGAATCGTGCCGGCAGT
GTCAGCGTTCGAATATAGTATGTGTGCGGTATCAGTTATCGTCGTACGAT
TGTGTATGGGGTAAAGGACGAGACGGATGCCGCACGTTGTAGGGTACTTT
CGTACTCCCGGCCATCTACCCGGATATGGACAACCAAAATAGGTTCTGTG
CCCCGGTATCCCGTTGAAGGGTACTTTCGCAAGGGTACGTTATATCGGAT
ACTACTGTCTGTGTATACTCTGGGTATACGTGGGTATCTACGCGGGTATA
TCATATGACCAACACACCTATTGTAGGTTCTGTACCCGAGTACCCCGTTG
TGAGGTACTTTCGCAAGGGTGTGTTTGATAGGGTACACACTCTGGGTATA
CCGGGGTATCTACCCGGGTATGACCAACACAACTATTGTAGGTTCTGTAC
CCGAGTACCCCGTTGTGGGGTACTTTCGCAAGGGTGTGCTTGATAAGGAA
CACACCCTGGATATATCCGGGTATCTACCCTGGTATGACCAACACAACTA
TTGTAGGTTCTGTACCCGAGTACCCCGTCGCGGGGTACTTTCGCAAGGGT
GTGTTTAATACGGTACACACCCTGCATATACCCGGGTATCTACCTCGGCA
TGACCAACACAACTATTGTAGGTTATGTGCCCGTGTCCGCCGTTGCAAGG
TATACACGCAACAGTGCGTTTAGTAGGATACTGTGTGTATTCCGGATTCA
CCCGGGTATTTACCCGGGTATAACCAACAAAACTAGGTTCGGAACCCGGT
CAACCCAAATTCGATACTCCCTTAAAGACCCCCTAGTAAGTTTTGATCGG
TAATACTGCACTGTAGTCAATGTAGGTATGATACGAAGTGATATGTATAG
TTGCATGCGTGGGGCTACAAGCCGTAAGGAGAAGTTCACCCTCGCCACCG
TGCGCCTTGCGCCCTGGAATCTAGTGACGAACTGGATATTTCTGCAAAGG
GCCCAAAACGTTACACACGCAAACCTGTTTCACCATGTGATAGCAGAAGA
AGTATCCACACTTAACTGCTGATGGTGGAGCCAACCACTCGTACTGTATC
CTAACACAGCACAGAAAATCTACTCATCTAAAAACGAGCCCTAAGAAGGG
CGGGCTGAAATTTATGAATTTTACGGGAAGACATATATTCGGAAACCGTT
ATAACGCAGTTAGCGCAGGAGGCACCCTTCTCCACAATAAGGAGTCCAGG
CTGGCCCAACATTTCCTACAGCAATAATGATTTTCTTTCTGTTAATAGGT
TCCTCTGCACTTCTTGTACACATCCTGCTGTCGCCATGCGATTATCCTGT
TCTCGTTCTTTGTCGCGATTTCTCTGCCGTCATTCGAAAATCACCCAAAA
CAAGTTGTTCGACAGCATCGACAAAGACGGCAGCGGCTACGTGGAGGAGC
GGGAGTGGCGAAGGCTGACGCGAGACACGGCGCTCGCCGCCTCCGACGAC
ACTGTCCTTTTGCTAGAACGGGTATGTTAGGCCTCGCTTAAACGTTGATG
TTTGATGCTTTCCTCTTGCTGCGTAGAACGGGTGGCTACATGGCTTGTGT
GACACTAGTACTGTGATACTGTCCCCTCCCTACGTAGAACGGGTGGCTAC
ATCGCTTGTGTGACACTAATGATGTTTGATAAATGTCTTCTCCCTACGTA
GCTACATCGCTTGTGTGACACTCTTCTCTTTCTAGAACGTGTAAACTACA
GCAGGTCTCGTTCTATGTTGATGCTTGACACTGTCTTCATGCTATCTACT
AGCACCGGTAGGCTACATCGCCTACTTTTGTGTTCGGCGCTGTCCACTTG
CTCGAAGGGACAGGTTACGTCTCGCTTGTGTTGACGTTTGACACTGTCCT
CTACGGAGGACCATAGTAAGTAGGACCAAATATTGTCAGTAAAAATAGGT
AAATATGTAGGTTTTTATGTATACCATAGGTCCTATTAACTATGGACCCC
CGTAATAATAATAGCGCGGATAGATCACGCCGCTTAGGGATCACTGTCCT
CTTTCTACTCACAACGTGGGTAGGTTATGTCTCGCTTGTGGGACACTGCT
TTCTCGCTGGAGAACGGGCAAGTTACGTCTCGCTTCTGTTGGTGTTTGAT
ACCGTCCTCCTACCATTAATATATCTGCGTCTTTAACGCTGGGCATTGAT
ACTACCGCCCTCATTTCTAGAAGGGGTAGGTTTCATCACTCAGGTGACAC
GGTCCTCTTACAACACTATGGACAGCGCTGGTAGATTGCGTCACCATTGT
TGAGGTTTTGATACTATTTTTTTGCTATCTCAAATGGCACGTGTAGGTCG
GGCCGCTTGTGTGACGTTGCCTTCTTGCTATAACGGATAGGATGCGTCGC
TCGTTAAGTTGGCGTTTTGTCAAGTTCGTCTATGCGTGTGTCTACCGCAG
CCACATTGATAACTGTTCGGGAAAGCGAAAATGTTCGACCCACAACCACA
TTCGGTAGTGATGACTGAGTGAGGGGGGAGCGATAGTTCTCGACCCGCAG
CCACATTTGATAGTGATGACTGGGTAGCAAAGCGATAGAGTCCGAACACC
TGAACGAATAAACTTCGCCCTGGTTTAATCGCTGACGAGAGGCATACAAC
GACCAGCCGTTGCGTTGAGTTGAGGGCATCGGCGGCGAAGCTAACGGCCA
TGCTGACATTCCAGGGAAACCACTGCCACCGTGCTTTCGGCCCCGCGAAC
AATGCAAACAAACGTTGCCGATGACAAGCGGGGCGACAGTTACAACGAGC
GCCAACATTTTGCACTGCTACAGCAGCAGTACCAACCATTTTCACTGCTT
CGGGGGACCATAGCAAATAGGACCTACGGTGCACACTAAAAAATGTATAT
TTACCTATTTTTACCAACAGTATTTGGTCCTATTTACTTTGGTCCCCCGT
AATAACTGTAGTATTCATACGAAGTAGTACATATTACGGAGGACCATAGT
AAATAGGACCAAATACTGTTAGTAAAAATAGATAAATATGTAGGTTTTTG
TGTGTATCGTAGTTCCTATTAACTATGGCCCCCCCGTAATAGTAATTATA
TCCCTTTTTTCAGTAGTAGACGTAAGCTATGGCAGGGGGAGTACCTTAAT
TTTCTGAAGCTCCTCACCCAAGAGAGCTATTAAATAGTCAGCCTACCCGA
AAATCGACCTTCGATAACATGGTAAAGCTTAATCCAATCAACACTCTCCT
ATCTTGAGGTATGCAACGAATCATGCTCTAAAAATATGAATGGGTTTCCA
ACGATAAGACATGCCTTATTTGGTAATGCTTCCGTGCCCTTAACCCCTTC
AATATTGCAGTCCCGATTTGGGGACAAACCAGTCTAATTCCAAGTAATTT
GTCCCCAAAACGGGACTGCAGTCCCAAAAGGGTTCAGGAGCTAAAAAGAG
GTGCATTACCTCCATATATCATGGCGCGCCTCATGAACTAAACTGTTTCA
TTGACGTATTTGCCCCATCGTCACACCGACATGACACGTCTTTGGAACGT
GCCTTCTAATGTCGTGCAACTCCCACCGTCGGCAGCAACGGCAGGACGAG
ATATCGTTCTCAAAGCTCCTCAGCGCAGCGTGATACTGTCATAGAAATAG
CGCCTGCTATTTATCGTGTAACTCCCACCGTCGGCAGCACCCGGGCAGCG
TTGCGCTTGGAAAATACGCCTTTAATCACCACGCAACTCCCACCACCACC
AGCAGCAACGCGGGGAGCGTGATACTTAAAAACACCCCCTGCTAAACATC
GCGCAACTCCCACTATCGCCAGCAACGCGGACAGCGTGGCACCTTAAATA
AAATAAGCCTTCTGAATATCGCAACTCCCACCACCGGCAGCAACGGGAGG
GCGAGATCTCCATAGTGGAAGTTCTGTGTGAGGTTCACCCACGCGCCTGC
GACGCCGACCTGGCGAAGATGTTGGAGTGGATAAGCGAGCCCACGCGACA
GGGGCCGGGGAAGGCGGTCAGCCGGGAACTAGCGATGGCCGAGCGCATGG
AGATTGCGGCGCTTTTCCAAATGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13894:227..4452+

>mRNA_M-pyrifera_M_contig13894.6099.1 ID=mRNA_M-pyrifera_M_contig13894.6099.1|Name=mRNA_M-pyrifera_M_contig13894.6099.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=918bp|location=Sequence derived from alignment at M-pyrifera_M_contig13894:227..4452+ (Macrocystis pyrifera P11B4 male)
ATGGGAGAAGAATTTCCGGAGGTAGAGCCGCAACGGGTGGCGGTTGCCAG
AAAGCCTCAGGAGCGGATGACGACATCTAGAGAGCAGGCGAAGTCGGCGG
CGGCGAGAGAGGGCAAGAGCAAATTCTCGCGATCGAGCATTTTGAAGATC
AAAGAGATGGGAGAAGAATTTCCGGAGGTAGAGCCGCAACGGGTGGCGGT
TGCCAGAAAGCCTCAGGAGCGGATGACGACATCTAGAGAGCAGGCGAAGT
CGGCGGCGGCGAGAGAGGGCAAGAGCAAATTCTCGCGATCGAGCATTTTG
AAGATCAAAGAGTTGTTCGACAGCATCGACAAAGACGGCAGCGGCTACGT
GGAGGAGCGGGAGTGGCGAAGGCTGACGCGAGACACGGCGCTCGCCGCCT
CCGACGACACTGTCCTTTTGCTAGAACGGTTGTTCGACAGCATCGACAAA
GACGGCAGCGGCTACGTGGAGGAGCGGGAGTGGCGAAGGCTGACGCGAGA
CACGGCGCTCGCCGCCTCCGACGACACTGTCCTTTTGCTAGAACGGCAAC
GGGAGGGCGAGATCTCCATAGTGGAAGTTCTGTGTGAGGTTCACCCACGC
GCCTGCGACGCCGACCTGGCGAAGATGTTGGAGTGGATAAGCGAGCCCAC
GCGACAGGGGCCGGGGAAGGCGGTCAGCCGGGAACTAGCGATGGCCGAGC
GCATGGAGATTGCGGCGCTTTTCCAAATGTAACAACGGGAGGGCGAGATC
TCCATAGTGGAAGTTCTGTGTGAGGTTCACCCACGCGCCTGCGACGCCGA
CCTGGCGAAGATGTTGGAGTGGATAAGCGAGCCCACGCGACAGGGGCCGG
GGAAGGCGGTCAGCCGGGAACTAGCGATGGCCGAGCGCATGGAGATTGCG
GCGCTTTTCCAAATGTAA
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