mRNA_M-pyrifera_M_contig13885.6094.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig13885.6094.1 vs. uniprot
Match: A0A6H5KIG1_9PHAE (Rtt106 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIG1_9PHAE) HSP 1 Score: 358 bits (918), Expect = 1.330e-117 Identity = 177/254 (69.69%), Postives = 208/254 (81.89%), Query Frame = 1
Query: 1 PLLCTLEGVQLLHPRGRFNLEFRKSGVTVTGKAATLKIAWDNVRHIIRLPRPEGFNWGKSLDKSDPAGSDLLALPLQKPVPLRKTEAALLLLQPDPKASHTEVSIVLDGVSHKVSGSQGTVIAGLMKLLCGVKQSVPDKGLFVSRGGKSFVKCYYGVNEGSLFPLRQGLFFMKPALFLPKGDIEQVVCGRGGSATTRYVDLVVGMEVGEDEKE----STREFSNIDREDLPSLQNYIQDALVTPRLREAKRAAK 750
P L TLE VQLL PRGRF+L RK GVT+ GKA + ++W NVRHII LPRPEGFNWGK LD DPAGSDL+ALPL+ PVP RK++ +++LLQPDPKA H+EVSI +DGVSH+VSGSQGT++ +KLL V+Q PD+GLF SR GKSFVKCY+GVNEGSLFPL+QGL FMKPALFLP+ DI++VVCGRGGSATTRYVDLVVG+E ++ E +EFSNIDR+ LPSLQ+YIQDALV PR REAKR AK
Sbjct: 73 PPLLTLENVQLLQPRGRFDLVLRKGGVTIAGKAGDVFVSWQNVRHIISLPRPEGFNWGKVLDPDDPAGSDLIALPLKSPVPFRKSKTSMVLLQPDPKAKHSEVSISVDGVSHQVSGSQGTLVMSALKLLSRVQQVAPDRGLFASRDGKSFVKCYHGVNEGSLFPLKQGLLFMKPALFLPRADIQEVVCGRGGSATTRYVDLVVGLEAEDEHGELVAKQQQEFSNIDRDALPSLQSYIQDALVAPRRREAKREAK 326
BLAST of mRNA_M-pyrifera_M_contig13885.6094.1 vs. uniprot
Match: D7FH98_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH98_ECTSI) HSP 1 Score: 201 bits (512), Expect = 5.940e-60 Identity = 102/165 (61.82%), Postives = 118/165 (71.52%), Query Frame = 1
Query: 1 PLLCTLEGVQLLHPRGRFNLEFRKSGVTVTGKAATLKIAWDNVRHIIRLPRPEGFNWGKSLDKSDPAGSDLLALPLQKPVPLRKTEAALLL---------------LQPDPKASHTEVSIVLDGVSHKVSGSQGTVIAGLMKLLCGVKQSVPDKGLFVSRGGKSF 450
P L TLE VQLL PRGRF+L FR+SGV + GKA +AWDNVRHIIRLPRPEGFNWGK LD DPAGSDL+ALPL+KPVP RK++ LQPDPKA H+EVSI +DG SH+VSGSQGT++ +KLL GV+Q PD+GLF SR GK F
Sbjct: 86 PPLLTLENVQLLQPRGRFDLVFRESGVIIAGKAGDAVVAWDNVRHIIRLPRPEGFNWGKVLDPDDPAGSDLIALPLKKPVPFRKSKVXXXXXXXXXXXXXXXXXXXLQPDPKAKHSEVSISVDGTSHQVSGSQGTLVMSALKLLSGVRQVAPDRGLFASRDGKRF 250
BLAST of mRNA_M-pyrifera_M_contig13885.6094.1 vs. uniprot
Match: A0A7S2RM47_9STRA (FACT complex subunit SSRP1 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RM47_9STRA) HSP 1 Score: 119 bits (299), Expect = 3.810e-27 Identity = 93/276 (33.70%), Postives = 139/276 (50.36%), Query Frame = 1
Query: 10 CTLEGVQLLHPRGRFNLEFRKSGVTVTGKAATLKIAWDNVRHIIRLPRPEGFNWGKSLDKSDPAGSDLLALPLQKPVPLRKTEAALLLLQPDPKASHTEVSIVLDGVS-----HKVSGSQGTVIAGLMK----LLCGVKQ-SVPDKGLFVSRGGKSFVKCYYGVNEGSLFPLRQGLFFMKPALFLPKGDIEQVVCGRGGSATTRY---VDLVVGMEVGEDEKESTREFSNIDREDLPSLQNYIQDALVTPRLREAKRAAKAATSS---PTEGEASV 789
C + V L+ PRG+F + +GK+ + + WDN+ HII+ P+P+ + K PA L L++P+ + K++ A L+LQ D KA T + +D + V+G + V++ L+ +LC + S PD+ +F S G FV CY V EG LFPLR+GL F +P LFLP DI + SA+ Y V++ V ME G + EFSNI +++ L Y D +V R R+ R A S PT EA++
Sbjct: 83 CDIGEVSLVQPRGKFACVLTDKALVFSGKSC-ISVLWDNIEHIIKFPKPDPYKPDK------PATVFFFCLTLKEPLTVGKSKLACLVLQTDLKAKKT---VGVDPAAPCLAASSVAGEEPVVVSKLLTSASAVLCDMGNLSEPDRSIFRSSVGAGFVSCYRRVQEGFLFPLREGLLFFRPPLFLPIADISGIC-----SASCEYRRSVEVTVEMEDG-----TKHEFSNIPKDEAAPLLEYA-DFMVKERKRQQVRVTDAGAKSGAAPTSSEAAL 337
BLAST of mRNA_M-pyrifera_M_contig13885.6094.1 vs. uniprot
Match: A0A7R9U489_9STRA (FACT complex subunit SSRP1 n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U489_9STRA) HSP 1 Score: 120 bits (300), Expect = 7.800e-27 Identity = 81/230 (35.22%), Postives = 127/230 (55.22%), Query Frame = 1
Query: 40 PRGRFNLEFRKSGVTVTGKAA--TLKIAWDNVRHIIRLPRPEGFNWGKSLDKSDPAGSDLLAL---PLQKPVPLRKTEAALLLLQPDPKASHTEVSIVLDG--VSHKVSGSQGTVIAGLMKLLCGVKQSVPDKGLFVS-RGGKSFVKCYYGVNEGSLFPLRQGLFFMKPALFLPKGDIEQVVCGRGGSAT-TRYVDLVVGMEVGEDEKESTREFSNIDREDLPSLQNYIQ 702
PRGR+ + K + + K+ TL I ++++R ++++ P + K +D L P KPV K E ++L+ + K E+ L+ + K +G+ VI+ L++ + V V D+ +F S G S+V C++GV +G L+PL +GL F KP LF+ + DI + CGRGGS TRYVDL + +E GE ++E EFSNIDR++LP L Y+Q
Sbjct: 88 PRGRYAIRVGKRSLVLQPKSLPKTLHIPFESIRSLVKVEMPNPY-------KRKDLAADYFVLGLDPAPKPVQGGK-ELPVVLISAERKG-FWEIERTLESSILPAKFTGNPSDVISSLLQTVTSVPMLVEDESVFASVLTGASYVSCFHGVKDGHLWPLSEGLLFAKPPLFVSESDILGISCGRGGSTGGTRYVDLTLTLE-GEGDEEKIVEFSNIDRQELPGLDKYVQ 307
BLAST of mRNA_M-pyrifera_M_contig13885.6094.1 vs. uniprot
Match: D7FH99_ECTSI (Rtt106 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH99_ECTSI) HSP 1 Score: 112 bits (279), Expect = 1.160e-26 Identity = 58/82 (70.73%), Postives = 68/82 (82.93%), Query Frame = 1
Query: 514 MKPALFLPKGDIEQVVCGRGGSATTRYVDLVVGMEVGEDEKEST----REFSNIDREDLPSLQNYIQDALVTPRLREAKRAA 747
MKPALFLP+ DI++VVCGRGGSATTRYVDLVVG+E +D+ E +EFSNIDR+ LPSLQ+YIQDALV PR REAK+ A
Sbjct: 1 MKPALFLPRTDIQEVVCGRGGSATTRYVDLVVGLEAEDDDGEPVAKQQQEFSNIDRDALPSLQSYIQDALVAPRQREAKQEA 82
BLAST of mRNA_M-pyrifera_M_contig13885.6094.1 vs. uniprot
Match: A0A7S1U891_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U891_9STRA) HSP 1 Score: 115 bits (287), Expect = 1.550e-25 Identity = 82/247 (33.20%), Postives = 124/247 (50.20%), Query Frame = 1
Query: 4 LLCTLEGVQLLHPRGRFNLEFRKSGVTVTGKAA--TLKIAWDNVRHIIRLPRPEGFNWGKSLDKSDPAGSDLLALPLQKPVPL-RKTEAALLLLQPDPKAS-----HTEVSIVLDGVSHKVSGSQGTVIAGLMKLLC--GVKQSVPDKGLFVSR-GGKSFVKCYYGVNEGSLFPLRQGLFFMKPALFLPKGDIEQVVCGRGGSA-TTRYVDLVVGMEVGEDEKESTR--EFSNIDREDLPSLQNYIQ 702
++ LE VQ PRGR LEF + V KA ++K+ + VR ++ +P+P+ + ++D S+ L L V RK L LQ D K E+ + + GS V+ L+ C G PD +F S G + V CY GV +G L+PL G+ F+KP FL + D+ + CGRGG+ TTRYVDL + ++ D+ + +F+NIDR++LP L+ Y+Q
Sbjct: 65 VVFALEQVQAHTPRGRVTLEFCDGHLHVRCKAEQNSVKVPYGKVRRVLCVPKPDPYR------RTDIPASEYFVLDLAGGVCNGRKAAVRALHLQADRKGEWRAERQAELPSHIAAAGDVLKGSPPDVLTALLSTFCHGGKALLAPDASVFTSSMKGLAHVSCYSGVKDGDLWPLPSGVLFLKPPRFLSESDVVGIACGRGGATGTTRYVDLQITVDDEADDAAAGESCDFTNIDRDELPGLEQYVQ 305
BLAST of mRNA_M-pyrifera_M_contig13885.6094.1 vs. uniprot
Match: A0A7S2DUN0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DUN0_9STRA) HSP 1 Score: 107 bits (268), Expect = 9.300e-23 Identity = 74/236 (31.36%), Postives = 119/236 (50.42%), Query Frame = 1
Query: 7 LCTLEGVQLLHPRGRFNLEFRKSGVTVTGKAATLKIAWDNVRHIIRLPRPEGFNWGKSLDKSDPAGS-DLLALPLQKPVPLRKTEAALLLLQPDPKASHTEVSIVLDGVSHKVSGSQGT---VIAGLMKLLCGVKQSVPDKGLFVSRGGKSFVKCYYGVNEGSLFPLRQGLFFMKPALFLPKGDIEQVVCGRGGSATTRYVDLVVGMEVGEDEKESTREFSNIDREDLPSLQNYIQ 702
+C+++ +Q PRGRF+LE + SG+ + GK+ ++ IA V IIR P+P+ + + D AG+ + L L +PV KT + ++ S T +L + ++ +G V+ L+ L S P + +F+S S + C+ V EG L+PLR+GL F KPAL L I + + R+++L V M G + EFSNI +E+ LQ+Y Q
Sbjct: 114 VCSIKDLQCTQPRGRFSLEVKPSGIILRGKSNSISIALSKVASIIRFPKPDPY-------RQDKAGNAQHIMLSLGEPVQYGKTTSLTSVVM---NVSGTRTLDILANATASITPQKGPEPQVLGDLLGTLSQTPMSSPTRDVFLSSKDVSSIACHRRVQEGFLYPLREGLLFFKPALLLKLSAINSMEI----VSAVRFIELSVEMTDG-----TRHEFSNISKEETNPLQSYAQ 330
BLAST of mRNA_M-pyrifera_M_contig13885.6094.1 vs. uniprot
Match: A0A7S1W059_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1W059_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 5.620e-19 Identity = 81/286 (28.32%), Postives = 132/286 (46.15%), Query Frame = 1
Query: 10 CTLEGVQLLHPRGRFNLEFRKSGVT-VTGKAATLKIAWDNVRHIIRLPRPEGFNWGKSLDKSDPAGSDLL-----ALPLQKPVPLRKTEAALLLLQ------PDPKASHTEVSIVLDGVSHKVSGSQGTVIAGLMKLL-----CGVKQSV------PDKGLFVSR--GGKSFVKCYYGVNEGSLFPLRQGLFFMKPALFLPKGDIEQVVCGRGGSATTRYVDLVVGM-EVGEDEKES-TREFSNIDREDLPSLQNYIQDALVTPRLREAKRAAKAATSSPTEGEAS 786
C++E V PR + L + G++ +T + + + V+ +I P+PE KS G +L ++ PV R + + Q P ++ LD ++ + + + + ++L C S D S GG FVKCY GVN+G+L+PL++GL F KP F+P+ + + CGRG + RYVD+V+ + + E+ KE + EFSNIDR +L L +YI D LV ++ + T+S TE + S
Sbjct: 119 CSIE-VSATQPRIKLELSYHSRGISFLTKRGEHIVVPSGAVQEVIVFPKPEDCRPKKSTGTVTWPGRMVLLCLENSIDESHPVQFRNKSLSQICYQLPSSTLPANQSPDVHEQPWLDALASSLDLTNKGALVQIRRVLPASAQCSASSSTHGYAFRSDHNAAFSHTTGGMPFVKCYQGVNDGALYPLKEGLLFFKPPKFVPRSALHSIACGRGAGGS-RYVDMVLSLKDATEEGKEGDSLEFSNIDRNELRVLNHYIHDVLVKAMEKDLHQGENEKTTSSTESDGS 402
BLAST of mRNA_M-pyrifera_M_contig13885.6094.1 vs. uniprot
Match: A0A7S4S6B6_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4S6B6_9STRA) HSP 1 Score: 97.8 bits (242), Expect = 6.280e-19 Identity = 77/262 (29.39%), Postives = 122/262 (46.56%), Query Frame = 1
Query: 10 CTLEGVQLLHPRGRFNLEFRKSGVT-VTGKAATLKIAWDNVRHIIRLPRPEGFNWGKSLDKSDPAGSDLL-----ALPLQKPVPLRKTEAALLLLQ------PDPKASHTEVSIVLDGVSHKVSGSQGTVIAGLMKLL-----CGVKQSV------PDKGLFVSR--GGKSFVKCYYGVNEGSLFPLRQGLFFMKPALFLPKGDIEQVVCGRGGSATTRYVDLVVGM-EVGEDEKESTR-EFSNIDREDLPSLQNYIQDALV 714
C++E V PR + L + G++ +T + + + V+ +I P+PE KS G +L ++ PV RK + + Q P ++ LD ++ + + + + ++L C S D S GG FVKCY GVN+G+L+PL++GL F KP F+P+ + + CGRG + RYVD+V+ + + E+ KE EFSNIDR +L L +YI D LV
Sbjct: 122 CSIE-VSATQPRIKLELSYHPRGISFLTKRGEHIVVPSGAVQEVIVFPKPEDCRPKKSTGTVTWPGRMVLLCLENSIDESHPVQFRKKSLSQICYQLPSSTLPANQSPDVHEQPWLDALASSLDLTNKGALVQIRRVLPASAQCSASSSTHGYAFRSDHNAAFSHTTGGMPFVKCYQGVNDGALYPLKEGLLFFKPPKFVPRSALHSIACGRGAGGS-RYVDMVLSLKDATEEGKEGDNLEFSNIDRNELRVLNHYIHDVLV 381
BLAST of mRNA_M-pyrifera_M_contig13885.6094.1 vs. uniprot
Match: K0SQN8_THAOC (THO complex subunit 2 n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SQN8_THAOC) HSP 1 Score: 96.7 bits (239), Expect = 2.270e-18 Identity = 69/253 (27.27%), Postives = 122/253 (48.22%), Query Frame = 1
Query: 25 VQLLHPRGRFNLEFRKSGVTVTG-KAATLKIAWDNVRHIIRLPRPEGFNWGKSLDKSD---PAGSDLLALPLQ--KPVPLRKTEAALLLLQPDPKASHTEVSIVLDGVSHKV-SGSQGTVIAGLMKLLCGVKQSVPDKG---LFVSRG----------GKSFVKCYYGVNEGSLFPLRQGLFFMKPALFLPKGDIEQVVCGRGGSATTRYVDLVVGMEVGEDE---KESTREFSNIDREDLPSLQNYIQDALV 714
V ++PRG+F L ++G+ + KA L + +V I +PE + K + S P +L + L+ + RK + + P + S+ + +G + GL+++ + S D G +F + G G V C+ G N+G+L+PLR+GL F KP +F+P+ + + CGRG + R+VD++V ++ E+E K + EF+NI+R++L L +YI L+
Sbjct: 1746 VSCINPRGKFQLSMHQNGIILRNPKAEVLAVPSSSVAQAIVFRKPEDYRKVKQMKASSNEKPLPGHILLIRLEDGSDISFRKKVLNQICITLPPYPVSGDESLPSQSAEEQWWNGLNACLGKGLVRVQATMDMSAYDSGNSYVFAAEGDVNGASSTSAGLPCVTCHQGFNDGALYPLREGLLFFKPPMFIPRSSLASISCGRGPGGS-RFVDMMVQLDDDEEEGSKKSNNLEFTNINRDELSKLNDYIHKTLI 1997 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13885.6094.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig13885.6094.1 >prot_M-pyrifera_M_contig13885.6094.1 ID=prot_M-pyrifera_M_contig13885.6094.1|Name=mRNA_M-pyrifera_M_contig13885.6094.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=319bp PLLCTLEGVQLLHPRGRFNLEFRKSGVTVTGKAATLKIAWDNVRHIIRLPback to top mRNA from alignment at M-pyrifera_M_contig13885:1304..8588+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig13885.6094.1 ID=mRNA_M-pyrifera_M_contig13885.6094.1|Name=mRNA_M-pyrifera_M_contig13885.6094.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=7285bp|location=Sequence derived from alignment at M-pyrifera_M_contig13885:1304..8588+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig13885:1304..8588+ >mRNA_M-pyrifera_M_contig13885.6094.1 ID=mRNA_M-pyrifera_M_contig13885.6094.1|Name=mRNA_M-pyrifera_M_contig13885.6094.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1914bp|location=Sequence derived from alignment at M-pyrifera_M_contig13885:1304..8588+ (Macrocystis pyrifera P11B4 male)back to top |