mRNA_M-pyrifera_M_contig13876.6092.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13876.6092.1
Unique NamemRNA_M-pyrifera_M_contig13876.6092.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig13876.6092.1 vs. uniprot
Match: D7FKE8_ECTSI (Swi3 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKE8_ECTSI)

HSP 1 Score: 226 bits (576), Expect = 1.540e-63
Identity = 139/207 (67.15%), Postives = 156/207 (75.36%), Query Frame = 1 
Query:    1 MSESEGERRPRPIGAADENDEDXXXXXNDPKPA--GNEAADTAAQQVAPEE-TTKKATSTRRPAFSENDLVKEKGLLQIYERFPEKCKYKGKGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLGGRERTRDLMLDLRNTERDRVIEAKYGSSAVDDAHAKDAAKAAAKE--TAAAE-----KREKVELAKSRY-MDVDEEG 588
            MSESE ERRPRPIG AD +DED      D   A  G+E    +    APEE TT K  S R PAFSEN LVKEKGL QIY+ FP+KC+YKG+GREAEFLRGLMVAYKEWGYQLYPGVAFEDLA RTEKLGGR RTR L+ +LR+TERDRV+EAKYG  AVDD HA++AA+ AAKE  TAAAE     +RE  ELA SRY M+VD +G
Sbjct:    1 MSESEEERRPRPIGVADGSDEDSGMERTDAAGANNGSEPGRDSTGVAAPEEATTAKKVSNRPPAFSENHLVKEKGLWQIYKDFPQKCQYKGRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLACRTEKLGGRARTRSLLRELRDTERDRVLEAKYGREAVDDVHAQEAARLAAKESKTAAAEGDRVEEREDEELAGSRYAMEVDGDG 207
[Close]
BLAST of mRNA_M-pyrifera_M_contig13876.6092.1 vs. uniprot
Match: A0A6H5L0P4_9PHAE (Swi3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0P4_9PHAE)

HSP 1 Score: 219 bits (557), Expect = 3.430e-60
Identity = 135/207 (65.22%), Postives = 153/207 (73.91%), Query Frame = 1 
Query:    1 MSESEGERRPRPIGAADENDEDXXXXXNDPKPAGN--EAADTAAQQVAPEE-TTKKATSTRRPAFSENDLVKEKGLLQIYERFPEKCKYKGKGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLGGRERTRDLMLDLRNTERDRVIEAKYGSSAVDDAHAKDAAKAAAKE--TAAAE-----KREKVELAKSRY-MDVDEEG 588
            MSESE ERRPRPIG AD + ED      D   A N  E    +    APEE TT K  S R PAFSEN LVKEKGL Q+Y+ FP+KC+YKG+GREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKL GR RTR LM +LR+TERDRV+EAK+G  AVDD H+++AA+ AAKE  TAAAE     +RE  E A SRY M+VD +G
Sbjct:    1 MSESEEERRPRPIGVADGSGEDSGMERTDAAGANNGTEPGLDSTGVAAPEEVTTAKKVSNRPPAFSENHLVKEKGLWQVYKDFPQKCRYKGRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLAGRARTRSLMRELRDTERDRVLEAKFGREAVDDVHSQEAARLAAKESKTAAAEGDRAEEREDEEFAGSRYTMEVDGDG 207
[Close]
BLAST of mRNA_M-pyrifera_M_contig13876.6092.1 vs. uniprot
Match: A0A836CM34_9STRA (Swi3 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM34_9STRA)

HSP 1 Score: 110 bits (275), Expect = 9.550e-22
Identity = 62/121 (51.24%), Postives = 80/121 (66.12%), Query Frame = 1 
Query:  118 TAAQQVAPEE--TTKKATSTRRPAFSENDLVKEKGLLQIYERFPEKCKYKGKGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLGGRERTRDLMLDLRNTERDRVIEAKYGSSAVD 474
            T A+Q + EE    KK    R P FSE  LV+ KGL++I + FP++ K   KG+E EFL  LM  YKEWGYQLYP +AFEDLA R E LGG+ER R  +  +R+ ERDR + A++G  AV+
Sbjct:   44 TPAEQQSDEEGKPAKKPAKRRAPPFSEVQLVEGKGLMKIRDDFPKRLKPCVKGKEREFLSRLMFLYKEWGYQLYPSLAFEDLAVRIETLGGKERVRGHLAMMRDEERDRCVRARHGKDAVE 164
[Close]
BLAST of mRNA_M-pyrifera_M_contig13876.6092.1 vs. uniprot
Match: W2Q8F0_PHYPN (Swi3 domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=W2Q8F0_PHYPN)

HSP 1 Score: 72.8 bits (177), Expect = 2.140e-11
Identity = 43/120 (35.83%), Postives = 62/120 (51.67%), Query Frame = 1 
Query:   85 DPKPAGNEAADTAAQQVAPEETTKKATSTRRPAFSENDLVKEKGLLQIYERFPEKCKYKGKGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLGGRERTRDLMLDLRNTERDRVI 444
            D  PA  +  D A    AP  T K+    RR    E+ L   +G  +++  FP +      GREA+ L  L+  YK+W + LYPG+ FED   RTE LG   + + LM++LR  ER + +
Sbjct:   24 DAAPATQDGGDDAGNADAPVVTQKR----RRNLLRESHLASAEGFKKVHRTFPYQVSADVSGREAQALASLVKMYKQWAFDLYPGLNFEDFVDRTEALGKGHQVQGLMVELREKERIKAV 139
[Close]
BLAST of mRNA_M-pyrifera_M_contig13876.6092.1 vs. uniprot
Match: A0A484EHM7_BRELC (Swi3 domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EHM7_BRELC)

HSP 1 Score: 73.2 bits (178), Expect = 2.150e-11
Identity = 44/108 (40.74%), Postives = 58/108 (53.70%), Query Frame = 1 
Query:  109 AADTAAQQVAPEETTKKATSTRRPAFSENDLVKEKGLLQIYERFPEKCKYKGKGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLGGRERTRDLMLDLRNTER 432
            A D AA  +AP    KK    RR    E+ LV  +G  +++  FP +      GREA+ L  L+  YK+W Y LYPG+ FED A RTE L    + + LM +LR  ER
Sbjct:   52 AGDGAAISIAPGTKQKK----RRNLLRESHLVSAEGFKKVHRTFPYQVSADVSGREAQALASLIRMYKQWAYDLYPGLNFEDFAERTEMLSKGHQVQGLMTELREKER 155
[Close]
BLAST of mRNA_M-pyrifera_M_contig13876.6092.1 vs. uniprot
Match: A0A7S1TV66_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TV66_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 2.900e-11
Identity = 36/97 (37.11%), Postives = 57/97 (58.76%), Query Frame = 1 
Query:  169 TRRPAFSENDLVKEKGLLQIYERFPEKCKYKGKGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLGGRERTRDLMLDLRNTERDRVIEAKYG 459
            TR P F E+ L    GL +I E FP   K++G+G EAE L  ++  Y+EW +QLYP + +ED+  RT KL  + R +++  + R   +   ++ +YG
Sbjct:   54 TRAPPFGESLLCSAAGLTKILEEFPRDLKFRGEGHEAEDLDRVLRLYREWAFQLYPSLHWEDVTDRTNKLRNKPRVKEIQENARLAAKASFLKQRYG 150
[Close]
BLAST of mRNA_M-pyrifera_M_contig13876.6092.1 vs. uniprot
Match: M4BUG3_HYAAE (Swi3 domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BUG3_HYAAE)

HSP 1 Score: 70.5 bits (171), Expect = 1.240e-10
Identity = 37/101 (36.63%), Postives = 53/101 (52.48%), Query Frame = 1 
Query:  172 RRPAFSENDLVKEKGLLQIYERFPEKCKYKGKGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLGGRERTRDLMLDLRNTERDRVIEAKYGSSAVD 474
            RR    E+ L+  +G  ++Y  FP +      GREA  L  L+  YK+W Y LYPG+ FED   RTE L    + + LM ++R  ER + +E + G    D
Sbjct:   48 RRNLLRESHLLSAEGFKKVYRTFPYQVSSTVSGREAPALASLIKMYKQWAYDLYPGLNFEDFVDRTETLAKGHQVQGLMAEMREKERRKRVERRCGKDEED 148
[Close]
BLAST of mRNA_M-pyrifera_M_contig13876.6092.1 vs. uniprot
Match: A0A6A3STA2_9STRA (Swi3 domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3STA2_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.320e-10
Identity = 35/92 (38.04%), Postives = 52/92 (56.52%), Query Frame = 1 
Query:  172 RRPAFSENDLVKEKGLLQIYERFPEKCKYKGKGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLGGRERTRDLMLDLRNTERDRVIE 447
            RR    E+ LV  +GL +++  FP +      GREA+ L  L+  YK+W + LYPG+ FED   R E LG   + + L+ DLR  E+ + +E
Sbjct:   10 RRNLLRESHLVSAEGLKKVHRTFPYQVSADVSGREAQALASLIKMYKQWAFDLYPGLNFEDFVERAEALGKSHQVQGLVADLREKEKLKALE 101
[Close]
BLAST of mRNA_M-pyrifera_M_contig13876.6092.1 vs. uniprot
Match: A0A6G0QIQ9_9STRA (Swi3 domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0QIQ9_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.330e-10
Identity = 36/95 (37.89%), Postives = 53/95 (55.79%), Query Frame = 1 
Query:  163 TSTRRPAFSENDLVKEKGLLQIYERFPEKCKYKGKGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLGGRERTRDLMLDLRNTERDRVIE 447
            T  RR    E+ LV  +GL +++  FP +      GREA+ L  L+  YK+W + LYPG+ FED   R E LG   + + L+ DLR  E+ + +E
Sbjct:   46 TKRRRNLLRESHLVSAEGLKKVHRTFPYQVSADVSGREAQALASLIKMYKQWAFDLYPGLNFEDFVERAEALGKSHQVQGLVADLREKEKLKALE 140
[Close]
BLAST of mRNA_M-pyrifera_M_contig13876.6092.1 vs. uniprot
Match: A0A482SX14_9ARCH (Swi3 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SX14_9ARCH)

HSP 1 Score: 70.1 bits (170), Expect = 1.890e-10
Identity = 42/115 (36.52%), Postives = 64/115 (55.65%), Query Frame = 1 
Query:   88 PKPAGNEAADTAAQQVAPEETTKKATSTRRPAFSENDLVKEKGLLQIYERFPEKCKYKGKGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLGGRERTRDLMLDLRNTER 432
            P+  G    D   ++    + TKKA + +   F E  LV   GL +IY  FP + +Y+ K +E +FLR L+  YKEW +QL+PG++FED   +   L  + R R  + +LR+ ER
Sbjct:   37 PEGRGTAPGDKLVEEEVQLKVTKKAKNAK--PFDEALLVGPHGLSRIYHEFPLRIRYQ-KNQEVQFLRQLLSLYKEWAFQLHPGLSFEDAILKISTLSHKSRVRSAVTELRDLER 148
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13876.6092.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKE8_ECTSI1.540e-6367.15Swi3 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5L0P4_9PHAE3.430e-6065.22Swi3 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A836CM34_9STRA9.550e-2251.24Swi3 domain-containing protein n=1 Tax=Tribonema m... [more]
W2Q8F0_PHYPN2.140e-1135.83Swi3 domain-containing protein n=11 Tax=Phytophtho... [more]
A0A484EHM7_BRELC2.150e-1140.74Swi3 domain-containing protein n=1 Tax=Bremia lact... [more]
A0A7S1TV66_9STRA2.900e-1137.11Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
M4BUG3_HYAAE1.240e-1036.63Swi3 domain-containing protein n=1 Tax=Hyaloperono... [more]
A0A6A3STA2_9STRA1.320e-1038.04Swi3 domain-containing protein n=1 Tax=Phytophthor... [more]
A0A6G0QIQ9_9STRA1.330e-1037.89Swi3 domain-containing protein n=1 Tax=Phytophthor... [more]
A0A482SX14_9ARCH1.890e-1036.52Swi3 domain-containing protein n=1 Tax=archaeon Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13876contigM-pyrifera_M_contig13876:2573..5958 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score237.3
Seed ortholog evalue1.8e-59
Seed eggNOG ortholog2880.D7FKE8
Preferred nameCSM3
KEGG koko:K10904,ko:K10998
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000070,GO:0000075,GO:0000076,GO:0000077,GO:0000217,GO:0000228,GO:0000278,GO:0000280,GO:0000403,GO:0000785,GO:0000790,GO:0000819,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007093,GO:0007346,GO:0007530,GO:0007531,GO:0007533,GO:0007534,GO:0008150,GO:0008152,GO:0008156,GO:0008284,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010453,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0016043,GO:0019219,GO:0019222,GO:0022402,GO:0022413,GO:0022414,GO:0030154,GO:0031298,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031494,GO:0031570,GO:0031573,GO:0031974,GO:0031981,GO:0032502,GO:0032505,GO:0032991,GO:0033262,GO:0033554,GO:0034085,GO:0034087,GO:0034641,GO:0034645,GO:0035822,GO:0042127,GO:0043111,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043388,GO:0043570,GO:0043596,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044770,GO:0044773,GO:0044774,GO:0045005,GO:0045132,GO:0045165,GO:0045595,GO:0045786,GO:0045930,GO:0045934,GO:0046483,GO:0048285,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051098,GO:0051099,GO:0051101,GO:0051171,GO:0051172,GO:0051276,GO:0051321,GO:0051716,GO:0051726,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0071514,GO:0071515,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090329,GO:0097159,GO:0098813,GO:0140013,GO:0140014,GO:1901360,GO:1901363,GO:1901576,GO:1903046,GO:1903047,GO:2000104,GO:2000112,GO:2000113,GO:2000241
EggNOG free text desc.replication fork protection
EggNOG OGsKOG3004@1,KOG3004@2759
Ec32 ortholog descriptionReplication fork protection component Swi3
Ec32 orthologEc-12_002330.1
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko03400
Exons2
Model size1671
Cds size1671
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815827.9757075-CDS-M-pyrifera_M_contig13876:2572..39671622815827.9757075-CDS-M-pyrifera_M_contig13876:2572..3967Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13876 2573..3967 -
1692277592.5469968-CDS-M-pyrifera_M_contig13876:2572..39671692277592.5469968-CDS-M-pyrifera_M_contig13876:2572..3967Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13876 2573..3967 -
1622815827.9915705-CDS-M-pyrifera_M_contig13876:5682..59581622815827.9915705-CDS-M-pyrifera_M_contig13876:5682..5958Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13876 5683..5958 -
1692277592.5598495-CDS-M-pyrifera_M_contig13876:5682..59581692277592.5598495-CDS-M-pyrifera_M_contig13876:5682..5958Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13876 5683..5958 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13876.6092.1prot_M-pyrifera_M_contig13876.6092.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13876 2573..5958 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13876.6092.1

>prot_M-pyrifera_M_contig13876.6092.1 ID=prot_M-pyrifera_M_contig13876.6092.1|Name=mRNA_M-pyrifera_M_contig13876.6092.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=557bp
MSESEGERRPRPIGAADENDEDSDDDRNDPKPAGNEAADTAAQQVAPEET
TKKATSTRRPAFSENDLVKEKGLLQIYERFPEKCKYKGKGREAEFLRGLM
VAYKEWGYQLYPGVAFEDLASRTEKLGGRERTRDLMLDLRNTERDRVIEA
KYGSSAVDDAHAKDAAKAAAKETAAAEKREKVELAKSRYMDVDEEGAPPA
SRAEGAGGAGQTTGGASSGVGGGGVVSEEVRERMEVNRRRAMERLRLKKE
EAAAAVAVTAAAAVAGGANDENDDDPQMDMMDEDTGWPGGDDFEDDEAAL
AEMEEEQVAKKATSGTTTTTPSLSAAEGETVQQSGESVSPVVDTLLESTK
PADEPMEEAAAGDPLVSAVVLPPSLALDGGDCGAAGGTPPSVAKAEAETA
VDAKQADGTETMLDAGEGSTNGDVTSEKTPPDSGASPARLTEREECPAGV
DQVGSSPPASGADTEADDAVLAGAAQANAWTTATVMTSRGGEGEEAVDRH
VEQTGFSSPRKKLRVTGGVPMSPLGSLFAGTDVPAEGGTAVVVNESLAGL
FSDEGL*
back to top

mRNA from alignment at M-pyrifera_M_contig13876:2573..5958-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13876.6092.1 ID=mRNA_M-pyrifera_M_contig13876.6092.1|Name=mRNA_M-pyrifera_M_contig13876.6092.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3386bp|location=Sequence derived from alignment at M-pyrifera_M_contig13876:2573..5958- (Macrocystis pyrifera P11B4 male)
ATGTCAGAATCGGAGGGTGAGCGTCGGCCTCGACCTATCGGTGCGGCAGA
CGAAAACGATGAGGATAGCGACGATGACCGCAATGATCCCAAGCCTGCCG
GCAACGAAGCAGCGGACACGGCAGCGCAACAGGTCGCGCCAGAGGAGACG
ACCAAGAAGGCCACGTCTACGAGGAGGCCCGCTTTCTCGGAGAACGATTT
GGTCAAAGAGAAGGGCTTGCTCCAAATCTACGAACGATTCCCCGAAAAGT
GCAAGTACAAGGGGAAGGGTCGAGAGGTGAGCAAATTCAAATTTCCCGAC
CAAACGCGTTGGTCAAGCCAAACATGCTTAGCCGGCGCAGAAAGAAAGAA
GGCCAGGAACCAGGAGATGGCAGAGACGCCCCCTTCCATCGCTTGGGGGC
TTACTGGCTGCTGTAGTTCGCAACACGTTTATCGTTGGCACACCACATGT
ACCACACGAATATCTCAACCTCAACCTCTGCTTGTCTCGCGTTTTTACAA
CACACAAGAGGTGCCTTGGTGCTATTATTGCTATTCCTACTGGTAGCTCC
AGTATCCTATCCGCCCGCATATGATTTCTATCCATTCACCGTGAACTTGC
TTGGTGAACATGGTTGGTGTATTGCTGACTGTACCAGGTACCTGGTGCCT
GGTATCTGGTACGAGTATAATATGATATCGCATACCCTGGGGCACCTGGT
TACAGGTGTACTGCTAGATATGAAGGTATCAAGATGATCGTGTTGATTTG
TGATAAGCTCCGTGGCTGTTGTGTGTCCGAGCTACTCGTAAAGTTTGTTT
GTACGTATGTACAACATCAGTAGACGACGAAAAACAAGAGGAGAGTGGTC
TTATCATCAGTCTGTTTACTGCTTGAAGTACCGGGTACAGTGGTATGGTG
TGAGCGAGCACCAGTACTCCAGCATCACAGCTCCTTGCAGTGCAGTTCGA
AAACTCGATGTACCCCCCCTTATCCCTTAGACGCAGCCCAGCAGCGGCGG
GTTGCTATTAGGAGTGTCACAGGTGTGTGGCCGATGCTTGTAGTCGGTAT
TCGTGACGTAAATAGGCTGTTTCCAATGCGGTTCGATTTTTGAGCTTCAG
ATTTTGACCCGATCGCATTTTCAGATGTGAACTACGAGTACTGTAGGCAA
ATCGAAACAGTCTTCCTACGAGTATGCGGAAAATTCGGATTTATTGTGCG
TGCATAGATTCGAGCAACGCCGAGACCAACTGCTGTTGTTGTGGTCTGAC
GCCGTGAAGAGACACGCAGGGTGCGCCGCACTGCGCTGAGGACCCAAGCG
TCCGAGCCAACGCTGACTGCCTTTGGTCCGGCGGCGAAGAGACGTGCCGA
GTGCGCTAGAATCAACTTGTCTTGGTATTTTTGTATTTCACAATGTGACT
GACTGCTGCTGCTCTACCGTACGAGTCAACGAGTACGTATCCACGGAGAG
GTGCGCGCCGAGTGCGCTTCTCTTGGTCTCTAGGCCCGAGCCCGCGCCAG
CCGACTGTATGTAGTCTGGCCACGGAGAGACGTGCCACCCGCCGACCGCC
GCCGACCGCGCGTCGGGCACGAAGCAACGTCGCTATACTGCTGTGTTACA
ATCCAACTGATCGATGATTCTGCTGCTGCTGCTTGCTGTCGTGGATAACA
TCTTTAATTAGAGACCATGCCTTTTTTCGATTTGAAAATCTGATGACCCA
AGTCGTCGGAATTTGGGCCAAAATCGGACGACTTGGGTCATCGTATTCTA
AAATGGAAAAAAATCCGGTCGGATTTTGCATACAGGTATTCGGACTGCAT
AAGCAGGGGCTTTCAATTTTGAGATCGAAAAATACAAATCTGAAGATCGC
AATCGAACCGCATAGGAAACAGCCTTATGTTCTGCTTGCTTGCCCTCTCA
ATTCTCGAAACGCGTCATCAATAGCAACACGGGATGGGGCGTTCACCCAC
TCATTGCTCACGGCACGGCACTTGAACCAAACCTCCAACAGGCGGAGTTC
CTGCGAGGCCTGATGGTGGCCTACAAGGAGTGGGGCTACCAGCTTTACCC
CGGCGTCGCTTTCGAGGACCTCGCCAGCCGTACGGAAAAGCTTGGCGGCA
GAGAACGCACTCGCGACCTCATGCTCGACCTCCGCAACACCGAGAGGGAC
CGCGTGATCGAGGCGAAGTACGGCTCCTCTGCCGTCGACGATGCCCACGC
TAAGGACGCCGCTAAAGCAGCCGCCAAGGAGACCGCTGCCGCCGAAAAGC
GTGAGAAAGTGGAGCTGGCGAAAAGCCGCTACATGGACGTCGACGAGGAG
GGCGCTCCTCCAGCTTCGCGGGCCGAAGGAGCTGGAGGAGCGGGCCAGAC
CACCGGGGGAGCTTCTTCTGGTGTTGGTGGGGGCGGTGTAGTTTCGGAGG
AAGTGCGGGAGCGCATGGAGGTTAACCGCCGACGAGCGATGGAGAGGCTG
CGCTTGAAGAAGGAAGAGGCGGCGGCGGCGGTGGCTGTGACAGCGGCAGC
AGCGGTGGCAGGAGGCGCCAACGACGAAAACGACGATGACCCACAGATGG
ACATGATGGATGAGGACACAGGGTGGCCGGGGGGTGACGATTTCGAGGAC
GACGAAGCCGCCCTTGCTGAGATGGAAGAGGAACAGGTGGCGAAGAAAGC
GACGTCGGGCACCACAACCACTACCCCTTCTTTGTCCGCCGCGGAAGGGG
AAACTGTCCAGCAGAGTGGAGAAAGTGTCAGCCCAGTGGTCGATACCTTG
CTGGAGTCCACGAAGCCAGCAGACGAACCCATGGAAGAAGCTGCGGCCGG
AGACCCCCTAGTTTCCGCGGTTGTGTTACCGCCCTCGTTGGCGCTCGATG
GTGGGGATTGTGGGGCCGCGGGGGGAACTCCGCCATCAGTGGCGAAGGCG
GAGGCGGAGACGGCGGTAGATGCGAAGCAAGCCGATGGTACTGAGACGAT
GCTCGATGCCGGGGAGGGGTCCACGAACGGTGATGTCACCAGCGAAAAAA
CACCCCCCGATTCAGGCGCATCGCCAGCCCGTTTAACCGAACGGGAAGAG
TGTCCTGCGGGCGTTGATCAGGTGGGCTCATCGCCACCAGCTTCTGGAGC
TGACACAGAAGCGGATGATGCGGTTTTAGCTGGCGCCGCGCAAGCAAACG
CGTGGACGACAGCGACAGTGATGACATCGAGGGGGGGTGAGGGGGAGGAG
GCTGTTGATCGTCATGTTGAGCAAACCGGTTTTAGCAGTCCTAGGAAAAA
GTTGAGGGTGACGGGTGGCGTGCCGATGTCTCCGCTAGGGAGCCTGTTCG
CGGGTACTGACGTCCCAGCAGAGGGGGGAACGGCTGTCGTAGTTAACGAG
TCGCTGGCAGGGCTGTTTTCCGACGAAGGTTTGTAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig13876:2573..5958-

>mRNA_M-pyrifera_M_contig13876.6092.1 ID=mRNA_M-pyrifera_M_contig13876.6092.1|Name=mRNA_M-pyrifera_M_contig13876.6092.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=3342bp|location=Sequence derived from alignment at M-pyrifera_M_contig13876:2573..5958- (Macrocystis pyrifera P11B4 male)
ATGTCAGAATCGGAGGGTGAGCGTCGGCCTCGACCTATCGGTGCGGCAGA
CGAAAACGATGAGGATAGCGACGATGACCGCAATGATCCCAAGCCTGCCG
GCAACGAAGCAGCGGACACGGCAGCGCAACAGGTCGCGCCAGAGGAGACG
ACCAAGAAGGCCACGTCTACGAGGAGGCCCGCTTTCTCGGAGAACGATTT
GGTCAAAGAGAAGGGCTTGCTCCAAATCTACGAACGATTCCCCGAAAAGT
GCAAGTACAAGGGGAAGGGTCGAGAGATGTCAGAATCGGAGGGTGAGCGT
CGGCCTCGACCTATCGGTGCGGCAGACGAAAACGATGAGGATAGCGACGA
TGACCGCAATGATCCCAAGCCTGCCGGCAACGAAGCAGCGGACACGGCAG
CGCAACAGGTCGCGCCAGAGGAGACGACCAAGAAGGCCACGTCTACGAGG
AGGCCCGCTTTCTCGGAGAACGATTTGGTCAAAGAGAAGGGCTTGCTCCA
AATCTACGAACGATTCCCCGAAAAGTGCAAGTACAAGGGGAAGGGTCGAG
AGGCGGAGTTCCTGCGAGGCCTGATGGTGGCCTACAAGGAGTGGGGCTAC
CAGCTTTACCCCGGCGTCGCTTTCGAGGACCTCGCCAGCCGTACGGAAAA
GCTTGGCGGCAGAGAACGCACTCGCGACCTCATGCTCGACCTCCGCAACA
CCGAGAGGGACCGCGTGATCGAGGCGAAGTACGGCTCCTCTGCCGTCGAC
GATGCCCACGCTAAGGACGCCGCTAAAGCAGCCGCCAAGGAGACCGCTGC
CGCCGAAAAGCGTGAGAAAGTGGAGCTGGCGAAAAGCCGCTACATGGACG
TCGACGAGGAGGGCGCTCCTCCAGCTTCGCGGGCCGAAGGAGCTGGAGGA
GCGGGCCAGACCACCGGGGGAGCTTCTTCTGGTGTTGGTGGGGGCGGTGT
AGTTTCGGAGGAAGTGCGGGAGCGCATGGAGGTTAACCGCCGACGAGCGA
TGGAGAGGCTGCGCTTGAAGAAGGAAGAGGCGGCGGCGGCGGTGGCTGTG
ACAGCGGCAGCAGCGGTGGCAGGAGGCGCCAACGACGAAAACGACGATGA
CCCACAGATGGACATGATGGATGAGGACACAGGGTGGCCGGGGGGTGACG
ATTTCGAGGACGACGAAGCCGCCCTTGCTGAGATGGAAGAGGAACAGGTG
GCGAAGAAAGCGACGTCGGGCACCACAACCACTACCCCTTCTTTGTCCGC
CGCGGAAGGGGAAACTGTCCAGCAGAGTGGAGAAAGTGTCAGCCCAGTGG
TCGATACCTTGCTGGAGTCCACGAAGCCAGCAGACGAACCCATGGAAGAA
GCTGCGGCCGGAGACCCCCTAGTTTCCGCGGTTGTGTTACCGCCCTCGTT
GGCGCTCGATGGTGGGGATTGTGGGGCCGCGGGGGGAACTCCGCCATCAG
TGGCGAAGGCGGAGGCGGAGACGGCGGTAGATGCGAAGCAAGCCGATGGT
ACTGAGACGATGCTCGATGCCGGGGAGGGGTCCACGAACGGTGATGTCAC
CAGCGAAAAAACACCCCCCGATTCAGGCGCATCGCCAGCCCGTTTAACCG
AACGGGAAGAGTGTCCTGCGGGCGTTGATCAGGTGGGCTCATCGCCACCA
GCTTCTGGAGCTGACACAGAAGCGGATGATGCGGTTTTAGCTGGCGCCGC
GCAAGCAAACGCGTGGACGACAGCGACAGTGATGACATCGAGGGGGGGTG
AGGGGGAGGAGGCTGTTGATCGTCATGTTGAGCAAACCGGTTTTAGCAGT
CCTAGGAAAAAGTTGAGGGTGACGGGTGGCGTGCCGATGTCTCCGCTAGG
GAGCCTGTTCGCGGGTACTGACGTCCCAGCAGAGGGGGGAACGGCTGTCG
TAGTTAACGAGTCGCTGGCAGGGCTGTTTTCCGACGAAGGTTTGTAGGCG
GAGTTCCTGCGAGGCCTGATGGTGGCCTACAAGGAGTGGGGCTACCAGCT
TTACCCCGGCGTCGCTTTCGAGGACCTCGCCAGCCGTACGGAAAAGCTTG
GCGGCAGAGAACGCACTCGCGACCTCATGCTCGACCTCCGCAACACCGAG
AGGGACCGCGTGATCGAGGCGAAGTACGGCTCCTCTGCCGTCGACGATGC
CCACGCTAAGGACGCCGCTAAAGCAGCCGCCAAGGAGACCGCTGCCGCCG
AAAAGCGTGAGAAAGTGGAGCTGGCGAAAAGCCGCTACATGGACGTCGAC
GAGGAGGGCGCTCCTCCAGCTTCGCGGGCCGAAGGAGCTGGAGGAGCGGG
CCAGACCACCGGGGGAGCTTCTTCTGGTGTTGGTGGGGGCGGTGTAGTTT
CGGAGGAAGTGCGGGAGCGCATGGAGGTTAACCGCCGACGAGCGATGGAG
AGGCTGCGCTTGAAGAAGGAAGAGGCGGCGGCGGCGGTGGCTGTGACAGC
GGCAGCAGCGGTGGCAGGAGGCGCCAACGACGAAAACGACGATGACCCAC
AGATGGACATGATGGATGAGGACACAGGGTGGCCGGGGGGTGACGATTTC
GAGGACGACGAAGCCGCCCTTGCTGAGATGGAAGAGGAACAGGTGGCGAA
GAAAGCGACGTCGGGCACCACAACCACTACCCCTTCTTTGTCCGCCGCGG
AAGGGGAAACTGTCCAGCAGAGTGGAGAAAGTGTCAGCCCAGTGGTCGAT
ACCTTGCTGGAGTCCACGAAGCCAGCAGACGAACCCATGGAAGAAGCTGC
GGCCGGAGACCCCCTAGTTTCCGCGGTTGTGTTACCGCCCTCGTTGGCGC
TCGATGGTGGGGATTGTGGGGCCGCGGGGGGAACTCCGCCATCAGTGGCG
AAGGCGGAGGCGGAGACGGCGGTAGATGCGAAGCAAGCCGATGGTACTGA
GACGATGCTCGATGCCGGGGAGGGGTCCACGAACGGTGATGTCACCAGCG
AAAAAACACCCCCCGATTCAGGCGCATCGCCAGCCCGTTTAACCGAACGG
GAAGAGTGTCCTGCGGGCGTTGATCAGGTGGGCTCATCGCCACCAGCTTC
TGGAGCTGACACAGAAGCGGATGATGCGGTTTTAGCTGGCGCCGCGCAAG
CAAACGCGTGGACGACAGCGACAGTGATGACATCGAGGGGGGGTGAGGGG
GAGGAGGCTGTTGATCGTCATGTTGAGCAAACCGGTTTTAGCAGTCCTAG
GAAAAAGTTGAGGGTGACGGGTGGCGTGCCGATGTCTCCGCTAGGGAGCC
TGTTCGCGGGTACTGACGTCCCAGCAGAGGGGGGAACGGCTGTCGTAGTT
AACGAGTCGCTGGCAGGGCTGTTTTCCGACGAAGGTTTGTAG
back to top