mRNA_M-pyrifera_M_contig1387.6090.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1387.6090.1
Unique NamemRNA_M-pyrifera_M_contig1387.6090.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1387.6090.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1387contigM-pyrifera_M_contig1387:8034..8606 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size573
Cds size333
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1387.6090.1prot_M-pyrifera_M_contig1387.6090.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1387 8138..8470 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815827.7918503-UTR-M-pyrifera_M_contig1387:8033..81371622815827.7918503-UTR-M-pyrifera_M_contig1387:8033..8137Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1387 8034..8137 +
1692277592.4619648-UTR-M-pyrifera_M_contig1387:8033..81371692277592.4619648-UTR-M-pyrifera_M_contig1387:8033..8137Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1387 8034..8137 +
1622815827.8179567-UTR-M-pyrifera_M_contig1387:8470..86061622815827.8179567-UTR-M-pyrifera_M_contig1387:8470..8606Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1387 8471..8606 +
1692277592.481832-UTR-M-pyrifera_M_contig1387:8470..86061692277592.481832-UTR-M-pyrifera_M_contig1387:8470..8606Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1387 8471..8606 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815827.8056-CDS-M-pyrifera_M_contig1387:8137..84701622815827.8056-CDS-M-pyrifera_M_contig1387:8137..8470Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1387 8138..8470 +
1692277592.473513-CDS-M-pyrifera_M_contig1387:8137..84701692277592.473513-CDS-M-pyrifera_M_contig1387:8137..8470Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1387 8138..8470 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1387.6090.1

>prot_M-pyrifera_M_contig1387.6090.1 ID=prot_M-pyrifera_M_contig1387.6090.1|Name=mRNA_M-pyrifera_M_contig1387.6090.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=111bp
MRAVYIMALTRGTFPLAVLSLPAAALDYTYWHDSTRSKRILKDYVTYLVR
PRQGHTAIYAPKNEHSCATQHETRDSERNSSARSGTYPGTYSCHARMYVP
YPVRALCVVT*
back to top

mRNA from alignment at M-pyrifera_M_contig1387:8034..8606+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1387.6090.1 ID=mRNA_M-pyrifera_M_contig1387.6090.1|Name=mRNA_M-pyrifera_M_contig1387.6090.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=573bp|location=Sequence derived from alignment at M-pyrifera_M_contig1387:8034..8606+ (Macrocystis pyrifera P11B4 male)
CCGGGGACCAGGTCGCTTTCCTCGGGTGCCGCGGGGCAGGCTGGTTGTTA
ATAGGGGCGTCGTCAGAGGAGTCCTTGGGGACCGAGATTTGCCGTGTTAC
ATGCATGCGCGCTGTCTATATTATGGCATTAACACGAGGTACGTTCCCAC
TAGCAGTGCTTTCCTTGCCCGCTGCAGCTCTAGACTATACGTACTGGCAT
GATAGTACACGCAGTAAGCGCATACTTAAAGACTATGTAACCTACCTTGT
TCGGCCACGGCAGGGTCACACCGCTATATACGCACCAAAAAACGAGCACT
CGTGTGCAACACAACATGAAACCAGGGACAGCGAACGAAACAGCAGCGCC
AGGTCCGGCACATACCCAGGTACATACTCGTGTCATGCTCGTATGTATGT
ACCGTACCCGGTACGAGCATTGTGTGTTGTTACGTGAGCGACGCATTGGT
TCACTCGCCGTTTGCGGAGGGGACTACTCGGACGAGGGTGACGTCCCCAG
ACCGCCAGGCCACCGCTTGCGGGTCGACGCCTTTAGAGGCTGGTCCACCA
GCTGTGCGGGCAGGTGCAACAAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig1387:8034..8606+

>mRNA_M-pyrifera_M_contig1387.6090.1 ID=mRNA_M-pyrifera_M_contig1387.6090.1|Name=mRNA_M-pyrifera_M_contig1387.6090.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=666bp|location=Sequence derived from alignment at M-pyrifera_M_contig1387:8034..8606+ (Macrocystis pyrifera P11B4 male)
ATGCGCGCTGTCTATATTATGGCATTAACACGAGGTACGTTCCCACTAGC
AGTGCTTTCCTTGCCCGCTGCAGCTCTAGACTATACGTACTGGCATGATA
GTACACGCAGTAAGCGCATACTTAAAGACTATGTAACCTACCTTGTTCGG
CCACGGCAGGGTCACACCGCTATATACGCACCAAAAAACGAGCACTCGTG
TGCAACACAACATGAAACCAGGGACAGCGAACGAAACAGCAGCGCCAGGT
CCGGCACATACCCAGGTACATACTCGTGTCATGCTCGTATGTATGTACCG
TACCCGGTACGAGCATTGTGTGTTGTTACGTGAATGCGCGCTGTCTATAT
TATGGCATTAACACGAGGTACGTTCCCACTAGCAGTGCTTTCCTTGCCCG
CTGCAGCTCTAGACTATACGTACTGGCATGATAGTACACGCAGTAAGCGC
ATACTTAAAGACTATGTAACCTACCTTGTTCGGCCACGGCAGGGTCACAC
CGCTATATACGCACCAAAAAACGAGCACTCGTGTGCAACACAACATGAAA
CCAGGGACAGCGAACGAAACAGCAGCGCCAGGTCCGGCACATACCCAGGT
ACATACTCGTGTCATGCTCGTATGTATGTACCGTACCCGGTACGAGCATT
GTGTGTTGTTACGTGA
back to top