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Homology
BLAST of mRNA_M-pyrifera_M_contig1385.6085.1 vs. uniprot
Match: D8LTP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTP1_ECTSI) HSP 1 Score: 237 bits (605), Expect = 1.020e-74 Identity = 110/150 (73.33%), Postives = 125/150 (83.33%), Query Frame = 1
Query: 1 KTHILDLFGPILDPIGYRLDLDTYFDDQDIPYMGKANAMDGPSNMFLNILCYSIVFIIVRVHPSTALKASMVYYGARVVTDYVIVATEPFRSRKFGQMTIIHTPWSAVVHIGLTAMGLYLHRNILHTAGAEGIRPLLFGPGAVGLVEPLV 450
KTH+LDLFGPI+DPIGYRLDL YFD++DIPYMGKANAM GP NM LNILCYS+VF + RVHPS ALK SMVYYG RVVTDYV++ TEP R RK GQMTI+HTPWSAV+H GLT +G Y HR+ L+TA G+ PL GPGAVGLVEP+V
Sbjct: 204 KTHVLDLFGPIIDPIGYRLDLSPYFDEEDIPYMGKANAMGGPRNMALNILCYSVVFAVFRVHPSVALKLSMVYYGGRVVTDYVVLFTEPAR-RKLGQMTIVHTPWSAVIHAGLTILGYYCHRSALYTAEIPGLHPLAVGPGAVGLVEPVV 352
BLAST of mRNA_M-pyrifera_M_contig1385.6085.1 vs. uniprot
Match: A0A6H5JP85_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP85_9PHAE) HSP 1 Score: 239 bits (610), Expect = 2.810e-73 Identity = 110/149 (73.83%), Postives = 126/149 (84.56%), Query Frame = 1
Query: 4 THILDLFGPILDPIGYRLDLDTYFDDQDIPYMGKANAMDGPSNMFLNILCYSIVFIIVRVHPSTALKASMVYYGARVVTDYVIVATEPFRSRKFGQMTIIHTPWSAVVHIGLTAMGLYLHRNILHTAGAEGIRPLLFGPGAVGLVEPLV 450
TH+LDLFGPI+DPIGYRLDL YFD++DIPYMGKANAMDGP NM LNI CYS+VFI+ +VHPS ALK SMVYYGARVVTDYV++ TEP R RK GQMTI+HTPWSAV+H GLT +G HRN+L+TA G+ PL GPGAVGLVEP+V
Sbjct: 412 THVLDLFGPIIDPIGYRLDLSPYFDEEDIPYMGKANAMDGPRNMALNIFCYSVVFIVFQVHPSVALKLSMVYYGARVVTDYVVLVTEPAR-RKLGQMTIVHTPWSAVIHAGLTILGYCCHRNVLYTAEVPGLHPLAVGPGAVGLVEPVV 559
BLAST of mRNA_M-pyrifera_M_contig1385.6085.1 vs. uniprot
Match: A0A6H5JS93_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS93_9PHAE) HSP 1 Score: 217 bits (552), Expect = 1.080e-68 Identity = 93/150 (62.00%), Postives = 120/150 (80.00%), Query Frame = 1
Query: 1 KTHILDLFGPILDPIGYRLDLDTYFDDQDIPYMGKANAMDGPSNMFLNILCYSIVFIIVRVHPSTALKASMVYYGARVVTDYVIVATEPFRSRKFGQMTIIHTPWSAVVHIGLTAMGLYLHRNILHTAGAEGIRPLLFGPGAVGLVEPLV 450
KTH+LDLFGP++DPIGYRLDL TY+D+++IPYMG ANAMDGP N+ +NI CY++VF+++R HP +LK +M+Y+GARVVTDY+++ EP R RK G MT +HTPWS ++ GLT +G HR+ LHTA G PL+ GPGAVGLVEPLV
Sbjct: 76 KTHLLDLFGPMVDPIGYRLDLTTYYDEEEIPYMGNANAMDGPHNLAMNIFCYALVFVVIRAHPPLSLKMAMIYFGARVVTDYLVMVAEPIR-RKLGLMTAVHTPWSGLIQAGLTVLGFSYHRHTLHTASVTGFHPLVVGPGAVGLVEPLV 224
BLAST of mRNA_M-pyrifera_M_contig1385.6085.1 vs. uniprot
Match: D8LTP3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTP3_ECTSI) HSP 1 Score: 217 bits (553), Expect = 3.990e-67 Identity = 95/150 (63.33%), Postives = 117/150 (78.00%), Query Frame = 1
Query: 1 KTHILDLFGPILDPIGYRLDLDTYFDDQDIPYMGKANAMDGPSNMFLNILCYSIVFIIVRVHPSTALKASMVYYGARVVTDYVIVATEPFRSRKFGQMTIIHTPWSAVVHIGLTAMGLYLHRNILHTAGAEGIRPLLFGPGAVGLVEPLV 450
KTH+LDLFGP+LDPIGYRLDL TY+D+ +IPYMG NAMDGP N+ +NI CY++VF ++R HP ALK +MVY+GARVVTDY+++ EP R RK G MT +HTPWS ++ GLT +G Y HR+ LHTA G PL+ GPG VGLVEPLV
Sbjct: 211 KTHLLDLFGPMLDPIGYRLDLTTYYDEAEIPYMGNPNAMDGPHNLAMNIFCYALVFAVIRAHPPLALKTAMVYFGARVVTDYLVMTAEPIR-RKLGLMTAVHTPWSGMIQAGLTVLGFYYHRHTLHTASVTGFHPLVVGPGVVGLVEPLV 359
BLAST of mRNA_M-pyrifera_M_contig1385.6085.1 vs. uniprot
Match: D7FJ41_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ41_ECTSI) HSP 1 Score: 87.0 bits (214), Expect = 3.830e-17 Identity = 47/126 (37.30%), Postives = 70/126 (55.56%), Query Frame = 1
Query: 1 KTHILDLFGPILDPIGYRLDLDTYFDDQDIPYMGKANAMDGPSNMFLNILCY---SIVFIIVRVHPSTALKASMVYYGARVVTDYVIVATEPFRSRKFGQMTIIHTPWSAVVHIGLTAMGLYLHRN 369
K + DL GP++DPIGY+++L+TY AN M GP+N+++ + Y + VF V P AL + V GARVVTDY++ A P R R + + P SAV+++ L ++G H N
Sbjct: 285 KRALFDLLGPVIDPIGYQIELETYV----------ANIMRGPANLYITLAGYVSSASVFFHFFVDPQQALTITFVLLGARVVTDYIVAALNPVRWRFGMSKKLDNMPISAVIYLLLASLGFIFHGN 400
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 462 |
| Cds size | 462 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815827.4204686-CDS-M-pyrifera_M_contig1385:329..422 | 1622815827.4204686-CDS-M-pyrifera_M_contig1385:329..422 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig1385 330..422 + |
| 1692277592.174499-CDS-M-pyrifera_M_contig1385:329..422 | 1692277592.174499-CDS-M-pyrifera_M_contig1385:329..422 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig1385 330..422 + |
| 1622815827.4329011-CDS-M-pyrifera_M_contig1385:1202..1313 | 1622815827.4329011-CDS-M-pyrifera_M_contig1385:1202..1313 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig1385 1203..1313 + |
| 1692277592.1836333-CDS-M-pyrifera_M_contig1385:1202..1313 | 1692277592.1836333-CDS-M-pyrifera_M_contig1385:1202..1313 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig1385 1203..1313 + |
| 1622815827.4431944-CDS-M-pyrifera_M_contig1385:1979..2050 | 1622815827.4431944-CDS-M-pyrifera_M_contig1385:1979..2050 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig1385 1980..2050 + |
| 1692277592.19204-CDS-M-pyrifera_M_contig1385:1979..2050 | 1692277592.19204-CDS-M-pyrifera_M_contig1385:1979..2050 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig1385 1980..2050 + |
| 1622815827.452874-CDS-M-pyrifera_M_contig1385:4588..4775 | 1622815827.452874-CDS-M-pyrifera_M_contig1385:4588..4775 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig1385 4589..4775 + |
| 1692277592.2007856-CDS-M-pyrifera_M_contig1385:4588..4775 | 1692277592.2007856-CDS-M-pyrifera_M_contig1385:4588..4775 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig1385 4589..4775 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig1385.6085.1 >prot_M-pyrifera_M_contig1385.6085.1 ID=prot_M-pyrifera_M_contig1385.6085.1|Name=mRNA_M-pyrifera_M_contig1385.6085.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=154bp
KTHILDLFGPILDPIGYRLDLDTYFDDQDIPYMGKANAMDGPSNMFLNIL CYSIVFIIVRVHPSTALKASMVYYGARVVTDYVIVATEPFRSRKFGQMTI IHTPWSAVVHIGLTAMGLYLHRNILHTAGAEGIRPLLFGPGAVGLVEPLV SRF* back to topmRNA from alignment at M-pyrifera_M_contig1385:330..4775+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_M-pyrifera_M_contig1385.6085.1 ID=mRNA_M-pyrifera_M_contig1385.6085.1|Name=mRNA_M-pyrifera_M_contig1385.6085.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=4446bp|location=Sequence derived from alignment at M-pyrifera_M_contig1385:330..4775+ (Macrocystis pyrifera P11B4 male) AAGACTCACATCCTGGACCTGTTTGGGCCTATCCTCGACCCCATCGGCTA
TAGGCTGGACCTCGACACCTACTTCGACGACCAAGACATCCCTGTGAGCT
TGTCAACGAGCAACGTGCTGTGTACCTAGCACGTTTGCCAATTTACGGTA
CATTGGGTTGGGTGTCTTGTAGTCTGATTCCTTTCTAAAAGAAACCCCAC
CCCACGAAAAGCTATTTGCCGTGGGAAAAGGTGACCAAAAAAACGTTTCA
AACCTGTAAGTATTTCTGGGTGGGGTAACTCTGTGGGTTGGTCAGCATGC
GGAGCAACTTCTTTTTACCTGTGTCACCAATTAACCCCTCAGCTTTGTCG
GTTTTCAAATATGTTTATATAGGACCCAACTGAATTTAACTATCGCAAAC
ACCCTACTGCAGTTCGTAGAATGTTTGTGTAGGTTAGTGATGGTAGTCGT
GGGGGGGTGGTGGTGGTGGTCGTGGTGGTGATGGTTGTGGTGGTGGTGGT
GGTAGTGGTGATGGAGGTGGTTGTGCTGTCTGTTTTTGGTTAGTGGTGCC
GTAATCGGTTTGGTGCGGTTGGTGGCTATGTTCGGGTTGATATCTACGTT
GTCTTGGTATGACTTTGGGTGATGATGGCGGTCAAGACTACGAGGACGAT
CAGCACTATCATGGCGATGACCTTGCCTTGTTTCCTGCTCTTTGCTGTGT
TGTCTTGGTATTTTCTTGTGTTGATATCCATATTTGTTAATAGTATCAAG
ATTTGAGACCGAGGTGTACATAGCGATGAAGGTGACCATTGTCATGACCA
CCCTTTGTCTTTTCGCTCCTGTCGATGTTGGTTGATGATGCTGTGACGGT
GCTGTTGTCGGTGGTGATGGCAGTACATGGGCAAGGCGAACGCGATGGAT
GGGCCTAGCAACATGTTCCTCAACATCCTGTGCTACAGCATCGTCTTCAT
AATAGTCCGCGTCCATCCCTCCACCGCCCTCAAGGTACGGGTAATGGCTG
TATATTCTGTTCTTACAAGTGCACCCCCTCTCCCCCCCAAACCATTGCGA
CGTACGGGCCCACAAACGATTAATGTGTTCAAAGGAAATTATGTCAATAA
GAAATGCGTAATAACAGATACGTTAATAGAAAATGCGTAATTAGAACGTC
AGGATCACCTGTTGGGGGAAGCTAAGAAACTTGCATGAAAAAATCGTGCT
TGCTCAGCGGCGAGCGCTGGACTAAATCTACCAGGTACCGGGTATATATT
TGGGTGCAATCCTGCACGTGCTGATGATATCTACGGTGAATCATGTATGG
CGGCTGTGAGCGGCTGTGAGAGATCTGCACACTGCACAATACAGACCCAA
CGCATCGAACACATCCTAGATCATGCGGGTTATACGGGTCACACCCAGCC
ACGTGAGCTAGATCATACACGAAAGCGACAGATTTCCATGAAAGATCTAG
ATCATGAAGTGGGAATTATCTGCACATTGATCTATCTGTACATGATCTGC
GGTGTGCAAGGTTGGTGTCACATTATTGGCAGTAGCAAGGTTTACTGTTG
GCGGGACTATTGTGTACCCCCTCCTGACCACCCTCATGAATGCCGCTGCA
CGTGCCCTATTTTATCTCTCCGCCCCCACCCCCGGCCTTCTTGTCTTCAG
GCCTCCATGGTTTACTACGGCGCGAGGGTGGTGACTGATTACGTAATCGT
CGCCACTGAACCTTTCCGAAGGTATGATTGGAAGGCCTTAACTTTGACTA
TTGCTCAACTTCAGCAATGGATTACTTTGAACCATTTTGACTCCAGTTCG
ACCATTCCTTTACTTGGGCAATGTAATACCTTCGACCATTGCTTAGCTTC
AAGCTTTCAATCACTGCTTCACTTGAACCATCGCTAGGCTGCAATCTCTA
CTGCATTCATTGCTTAGCTCCGCCCATCGCTTACCTTCAACTACTGCTTT
GCTCAAACCATTACTTGCCTTCAACCATTGCTGAACTTCAACCAGTAACT
AGGGATTGTAATAGTCCTCTCCGCCCCAATGACAGACCGGCCATCGTTTA
GATTTTGGAGTTCGTTCGAACCAAATACGAAACGTATGAGGTGAAGAAAT
AGGGCCTACTGTATTGTAGATACAGCAATCATGCAGTATACAAACGGATT
CGGGAAAACAACTGCGATTACGGGCTTCTACTCCGCAATTATGAAACCTA
TTCATTACCATCAGCAGCGAGGTTGAAATCAATGCACACTTGTTGGTAGG
CACGGAGGCTAGACGTAAGACAATCGCCAATCCATAATCACCTTCGATCC
TTGCTTGTATCAAACCATTGCTTGTCTCCAACTATTGCATATCTTCAAGC
ATAGCCACTGCTTGCCTTCAGCCATATTCTTTTTTTCTTATCTCTGGCAA
TTACTTAGCTCCCAAGCACTGAGTTCTGTGTACCTTCAGCTAATGCTTAC
TTTTAACCGTCTCTTAGCTTCAATCACTGCTATACTTCAACCATTGCTTA
CCTTCAGCAGTTGCGTTCAATTAATCATTGGCTAATTTCCACCACTGATT
AATATCAAGCATCGTATAGCCTTCGTCCATTGGTTAACCTCAAACGAAAA
TATAACAACTGCTGAGCTTTAACACTGGTCAACTTCAGCCATTGCTGATT
TTCAACCACTTCTCATAGCTACAACCATTGGATACCTTGCACCATGGGCT
AGCTTCAATCACTGCTTAACTTTAACCATTGTATGCCTTCATCCGCTACT
TAAGTTCGAGCTAAAAATTCAGCCGCTACTTAACTTCAAGTATTGATTAT
ATTCGATGACTGCTTAAATTCAGCTACTGCTAGTAGCCACAGGCATTGTT
CAGCTTCAGCGATTGCTTAGCTTCAACCGGTGATGAGGTTGAGCTTCAAC
CATTGATTAGCTTCAATCCATGATGAAGTTCAGCCATTGTTTAGATTCAA
TCACTGCTTAGCTTCAATCATGGCTTGGATTCAACCACTGCTTAATTTGG
ATACCTCATTTCCTACAACCATGTGCTTAGCCTCGACCATTGCTTGTTTT
TAACCTACCTTCAACCATTGCGTAAACTCAATAACTTCTTATCCTCTGGT
TGCGTTTCTTATTTTCCCTCAGGCGGACGCGTAAATTTCAACCGTCGCTG
AGGATCCCCTTTAGAACCGCCCCACGGTTTTTGGAGACTGCGTACTTGAA
CTTTGCAGCAAGTTTTTTTGCAGTAGTCGAAGGTTCAGACCATATGCGCT
CACCACACGTCAAAGTAAGATCCTATGAAGACCTGAATGACTTGAGCTAC
AGTGTAATTCGTACTACAGTGTAATTCAAGAAGTTAACTACAGTAGTATT
CACCTGCTAGGTAGACGGTATCGTGTGTCGGCCGTTAACACCCTTGATAC
CTTGACGCATCGCCAGAAACGACGATAACTTTGCTGTTTCCAACCGTCTA
GGAGCGAGTGCGCGCCCAACAGCACCAGAAGGATCATGTTGCGCCCGTGC
CGCACGACTCCTTAGATTGTACTGGCAACTCAGACACCGATCGGTGTCAT
TCCGCAATCACGCACTGGCCGGTGCCGTAATCGTCACCTTTTACCATCAT
TTTTGCGTTAATAGGGAGTTCATGTATTGATAACTACTTACGCCCTTGGC
GAAGTCTTATGTATGTGTAAACCCGCAACACGAACTGTACACCGGTATGT
ACGAAGTAGTATACGCAGCTTGCATGGATTTCGATGATAAGCCTCGATAT
CACGGCCAAGGCGCTAACTTACAAAAAAAAAAGCTTGGTCGTCTATCGGA
CACCATCTCTTCAACTACGGCCTGGCCTTTTTTCGAGGGGTTCAATTTTG
CGCTACAATGACAAGAACCACAACAACAACGATAATAACAACCACGACAA
CCATGACAACAGCAATATCAACAATAACCACAGCTTCTTTTGGCGGGCCA
ATTTCCCTCTACCAGAAGAACAACAGCAACAGTAATGAACAACAACAGCA
GGGGTCCATTGTTTTCCTGCCTCGAGCAACGACCCCGCTTCTCTAACCCC
GACTGAAATTGTAACACGAACGTGGGGTAGCTGCTGCAAAACAGAGGGGG
GGGGGTAAATTCTTACCGAAACTGCTGTGCAAACCGGAAGGGGAGTAGGT
AAATTCTTTATGAAACTACTACTGCTGTAATTAAACTTCGCTTCGCGAAA
ACAACTGGCGCACTGTACGACTGTATGTATATTTTAACTAAAAGGCGAAA
CTCCCAAAGCAGGAAATTCGGGCAGATGACCATCATCCACACTCCCTGGT
CTGCCGTGGTCCACATTGGCTTGACGGCGATGGGTCTCTACCTCCATCGC
AACATTCTTCATACGGCGGGGGCGGAAGGAATCCGTCCCCTCCTTTTCGG
GCCTGGTGCAGTGGGGCTAGTGGAGCCTCTGGTGAGTCGATTTTGA back to topCoding sequence (CDS) from alignment at M-pyrifera_M_contig1385:330..4775+ >mRNA_M-pyrifera_M_contig1385.6085.1 ID=mRNA_M-pyrifera_M_contig1385.6085.1|Name=mRNA_M-pyrifera_M_contig1385.6085.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=924bp|location=Sequence derived from alignment at M-pyrifera_M_contig1385:330..4775+ (Macrocystis pyrifera P11B4 male) AAGACTCACATCCTGGACCTGTTTGGGCCTATCCTCGACCCCATCGGCTA TAGGCTGGACCTCGACACCTACTTCGACGACCAAGACATCCCTAAGACTC ACATCCTGGACCTGTTTGGGCCTATCCTCGACCCCATCGGCTATAGGCTG GACCTCGACACCTACTTCGACGACCAAGACATCCCTTACATGGGCAAGGC GAACGCGATGGATGGGCCTAGCAACATGTTCCTCAACATCCTGTGCTACA GCATCGTCTTCATAATAGTCCGCGTCCATCCCTCCACCGCCCTCAAGTAC ATGGGCAAGGCGAACGCGATGGATGGGCCTAGCAACATGTTCCTCAACAT CCTGTGCTACAGCATCGTCTTCATAATAGTCCGCGTCCATCCCTCCACCG CCCTCAAGGCCTCCATGGTTTACTACGGCGCGAGGGTGGTGACTGATTAC GTAATCGTCGCCACTGAACCTTTCCGAAGGCCTCCATGGTTTACTACGGC GCGAGGGTGGTGACTGATTACGTAATCGTCGCCACTGAACCTTTCCGAAG CAGGAAATTCGGGCAGATGACCATCATCCACACTCCCTGGTCTGCCGTGG TCCACATTGGCTTGACGGCGATGGGTCTCTACCTCCATCGCAACATTCTT CATACGGCGGGGGCGGAAGGAATCCGTCCCCTCCTTTTCGGGCCTGGTGC AGTGGGGCTAGTGGAGCCTCTGGTGAGTCGATTTTGACAGGAAATTCGGG CAGATGACCATCATCCACACTCCCTGGTCTGCCGTGGTCCACATTGGCTT GACGGCGATGGGTCTCTACCTCCATCGCAACATTCTTCATACGGCGGGGG CGGAAGGAATCCGTCCCCTCCTTTTCGGGCCTGGTGCAGTGGGGCTAGTG GAGCCTCTGGTGAGTCGATTTTGA back to top
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