mRNA_M-pyrifera_M_contig13839.6081.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13839.6081.1
Unique NamemRNA_M-pyrifera_M_contig13839.6081.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig13839.6081.1 vs. uniprot
Match: A0A6H5KHG0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG0_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 9.190e-34
Identity = 58/88 (65.91%), Postives = 70/88 (79.55%), Query Frame = 1 
Query:   19 QVPGMRPDGRLSSLNQLVLKNCTREALQDYFDNTWTLTESLFASLQGEQAFMTLPPYRLRHPLIFYYGHPAVLYVNKLRAAGIIHVRE 282
            +VPG R DG++SSL QLVL++CT++    YFDN+W LTESLFA LQGE+AF+  P + LRHPLIFYYGH A  YVNKLRAAGI+  RE
Sbjct:   74 EVPGRREDGKISSLPQLVLRDCTKQVA--YFDNSWMLTESLFAGLQGEEAFLLRPLHGLRHPLIFYYGHAAAFYVNKLRAAGILQARE 159
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BLAST of mRNA_M-pyrifera_M_contig13839.6081.1 vs. uniprot
Match: D7FTN7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTN7_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 1.470e-32
Identity = 59/84 (70.24%), Postives = 72/84 (85.71%), Query Frame = 1 
Query:   19 QVPGMRPDGRLSSLNQLVLKNCTREALQDYFDNTWTLTESLFASLQGEQAFMTLPPYRLRHPLIFYYGHPAVLYVNKLRAAGII 270
            +VPG R DG++SSL QLVL++CT+++LQ YFDN+W LTESLFA LQGE+AF+  P + LRHPLIFYYGH A LYVNKLRAAGI+
Sbjct:   66 EVPGRREDGKISSLPQLVLRDCTKQSLQAYFDNSWMLTESLFAGLQGEEAFLLRPLHGLRHPLIFYYGHAAALYVNKLRAAGIL 149
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BLAST of mRNA_M-pyrifera_M_contig13839.6081.1 vs. uniprot
Match: UPI0009A4A0BE (5-histidylcysteine sulfoxide synthase n=1 Tax=Zoogloea sp. LCSB751 TaxID=1965277 RepID=UPI0009A4A0BE)

HSP 1 Score: 121 bits (304), Expect = 5.350e-30
Identity = 58/90 (64.44%), Postives = 69/90 (76.67%), Query Frame = 1 
Query:    1 TGKPLQQVPGMRPDGRLSSLNQLVLKNCTREALQDYFDNTWTLTESLFASLQGEQAFMTLPPYRLRHPLIFYYGHPAVLYVNKLRAAGII 270
            TG   +  PGM+PDGRL++L Q  L  CTRE++   FDN WTLTE LFASLQGE+AF   P + LRHP++FYYGHPAVLYVNKLR AG+I
Sbjct:   39 TGLAPENCPGMQPDGRLTALPQPDLATCTRESVLATFDNGWTLTEVLFASLQGEEAFYRPPYHHLRHPMVFYYGHPAVLYVNKLRVAGLI 128
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BLAST of mRNA_M-pyrifera_M_contig13839.6081.1 vs. uniprot
Match: A0A7U7GD36_9GAMM (Uncharacterized protein n=1 Tax=Candidatus Contendobacter odensis Run_B_J11 TaxID=1400861 RepID=A0A7U7GD36_9GAMM)

HSP 1 Score: 120 bits (302), Expect = 9.990e-30
Identity = 56/90 (62.22%), Postives = 68/90 (75.56%), Query Frame = 1 
Query:    1 TGKPLQQVPGMRPDGRLSSLNQLVLKNCTREALQDYFDNTWTLTESLFASLQGEQAFMTLPPYRLRHPLIFYYGHPAVLYVNKLRAAGII 270
            TG+  Q  PG +PDG L+SL    L +CTR+   DYFDN+WTLTE LF+SLQGE+AF   P + LRHP+IFYYGHP VLY+NKLR AG+I
Sbjct:   39 TGRKPQDCPGRQPDGTLTSLPLPHLASCTRQQTLDYFDNSWTLTELLFSSLQGEEAFFRPPYHHLRHPMIFYYGHPPVLYINKLRVAGLI 128
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BLAST of mRNA_M-pyrifera_M_contig13839.6081.1 vs. uniprot
Match: A0A317MW88_9GAMM (5-histidylcysteine sulfoxide synthase/putative 4-mercaptohistidine N1-methyltransferase n=1 Tax=Plasticicumulans acidivorans TaxID=886464 RepID=A0A317MW88_9GAMM)

HSP 1 Score: 118 bits (295), Expect = 8.780e-29
Identity = 56/90 (62.22%), Postives = 67/90 (74.44%), Query Frame = 1 
Query:    1 TGKPLQQVPGMRPDGRLSSLNQLVLKNCTREALQDYFDNTWTLTESLFASLQGEQAFMTLPPYRLRHPLIFYYGHPAVLYVNKLRAAGII 270
            TG P Q  PG++ DG LSSL    L  C+R A++DYFDNTWTLTE LFA+L+ E AF   P + LRHP+IFYYGHP VLYVNKLR AG++
Sbjct:   30 TGLPPQDCPGLQADGTLSSLPLPDLARCSRAAVRDYFDNTWTLTELLFATLRSEDAFFRPPYHGLRHPMIFYYGHPPVLYVNKLRVAGLL 119
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BLAST of mRNA_M-pyrifera_M_contig13839.6081.1 vs. uniprot
Match: UPI0019C6AA6A (5-histidylcysteine sulfoxide synthase n=1 Tax=Candidatus Sericytochromatia bacterium TaxID=2762020 RepID=UPI0019C6AA6A)

HSP 1 Score: 117 bits (293), Expect = 1.640e-28
Identity = 57/91 (62.64%), Postives = 70/91 (76.92%), Query Frame = 1 
Query:    1 TGK-PLQ-QVPGMRPDGRLSSLNQLVLKNCTREALQDYFDNTWTLTESLFASLQGEQAFMTLPPYRLRHPLIFYYGHPAVLYVNKLRAAGI 267
            TGK PL  Q PG+ PDGR++SL Q  +  C+RE L DYFDN+W +TE LFA+LQGE+AF   P + LRHPL+FYYGHPA LY+NKLR AG+
Sbjct:   39 TGKLPLSGQCPGVGPDGRITSLPQPDVSRCSREDLLDYFDNSWAITEILFAALQGEEAFFRPPYHDLRHPLVFYYGHPAALYLNKLRVAGL 129
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BLAST of mRNA_M-pyrifera_M_contig13839.6081.1 vs. uniprot
Match: A0A482SN88_9ARCH (5-histidylcysteine sulfoxide synthase (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SN88_9ARCH)

HSP 1 Score: 115 bits (288), Expect = 5.640e-28
Identity = 56/90 (62.22%), Postives = 65/90 (72.22%), Query Frame = 1 
Query:    1 TGKPLQQVPGMRPDGRLSSLNQLVLKNCTREALQDYFDNTWTLTESLFASLQGEQAFMTLPPYRLRHPLIFYYGHPAVLYVNKLRAAGII 270
            TGK     PG   DG+L SL Q    N TR  LQ YFDNTWTLTE + +SLQGE+AFM  P + LRHP+IFYYGHPAVLY+NKLR AG++
Sbjct:  142 TGKAPSNCPGFA-DGKLYSLPQATFDNLTRHGLQAYFDNTWTLTEVMMSSLQGEEAFMRPPYHDLRHPMIFYYGHPAVLYINKLRVAGLL 230
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BLAST of mRNA_M-pyrifera_M_contig13839.6081.1 vs. uniprot
Match: A0A8B5WS91_9GAMM (5-histidylcysteine sulfoxide synthase n=1 Tax=Candidatus Competibacteraceae bacterium TaxID=2053538 RepID=A0A8B5WS91_9GAMM)

HSP 1 Score: 115 bits (287), Expect = 1.080e-27
Identity = 54/90 (60.00%), Postives = 64/90 (71.11%), Query Frame = 1 
Query:    1 TGKPLQQVPGMRPDGRLSSLNQLVLKNCTREALQDYFDNTWTLTESLFASLQGEQAFMTLPPYRLRHPLIFYYGHPAVLYVNKLRAAGII 270
            TG   Q  PG +PDG L+SL Q  L  CTR+   DYF+N WTLTE+LF+ LQGE+AF   P + LRHP+IFYYGHP  LY NKLR AG+I
Sbjct:  481 TGLAPQDSPGRQPDGTLTSLPQPNLATCTRQQALDYFNNGWTLTETLFSGLQGEEAFFRPPYHHLRHPMIFYYGHPPALYTNKLRVAGLI 570
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BLAST of mRNA_M-pyrifera_M_contig13839.6081.1 vs. uniprot
Match: A0A3D2VQA3_9GAMM (Uncharacterized protein n=1 Tax=Candidatus Competibacteraceae bacterium TaxID=2053538 RepID=A0A3D2VQA3_9GAMM)

HSP 1 Score: 114 bits (284), Expect = 2.690e-27
Identity = 53/90 (58.89%), Postives = 65/90 (72.22%), Query Frame = 1 
Query:    1 TGKPLQQVPGMRPDGRLSSLNQLVLKNCTREALQDYFDNTWTLTESLFASLQGEQAFMTLPPYRLRHPLIFYYGHPAVLYVNKLRAAGII 270
            TG P Q+ PG + DG L+SL    L  C R+ + DYFDNTWTLTE+LF+ L+ E+AF   P + LRHP+IFYYGHP  LYVNKLR AG+I
Sbjct:   40 TGLPPQECPGAQADGTLTSLPLPDLAACARQQVLDYFDNTWTLTETLFSGLRSEEAFFRPPYHHLRHPMIFYYGHPPALYVNKLRVAGLI 129
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BLAST of mRNA_M-pyrifera_M_contig13839.6081.1 vs. uniprot
Match: A0A814FAY1_9BILA (Hypothetical protein n=1 Tax=Adineta steineri TaxID=433720 RepID=A0A814FAY1_9BILA)

HSP 1 Score: 105 bits (262), Expect = 2.800e-27
Identity = 54/94 (57.45%), Postives = 65/94 (69.15%), Query Frame = 1 
Query:    1 TGKP--LQQVPGMRPDGRLSSLNQLVLKNCTREALQDYFDNTWTLTESLFASLQGEQAFMTLPPYRLRHPLIFYYGHPAVLYVNKLRAAGIIHV 276
            TGKP      PG+  +G + SL Q V  N +R+ L DYFDNTWTLTE LF  L  E+A+   P ++LRHP+IFYYGHPAVLY+NKLR AG I V
Sbjct:   17 TGKPPVYGVCPGVESNGSIKSLPQ-VKTNASRKELLDYFDNTWTLTEVLFDGLVNEEAYYCRPYHKLRHPMIFYYGHPAVLYINKLRVAGFIXV 109
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13839.6081.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KHG0_9PHAE9.190e-3465.91Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FTN7_ECTSI1.470e-3270.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI0009A4A0BE5.350e-3064.445-histidylcysteine sulfoxide synthase n=1 Tax=Zoog... [more]
A0A7U7GD36_9GAMM9.990e-3062.22Uncharacterized protein n=1 Tax=Candidatus Contend... [more]
A0A317MW88_9GAMM8.780e-2962.225-histidylcysteine sulfoxide synthase/putative 4-m... [more]
UPI0019C6AA6A1.640e-2862.645-histidylcysteine sulfoxide synthase n=1 Tax=Cand... [more]
A0A482SN88_9ARCH5.640e-2862.225-histidylcysteine sulfoxide synthase (Fragment) n... [more]
A0A8B5WS91_9GAMM1.080e-2760.005-histidylcysteine sulfoxide synthase n=1 Tax=Cand... [more]
A0A3D2VQA3_9GAMM2.690e-2758.89Uncharacterized protein n=1 Tax=Candidatus Competi... [more]
A0A814FAY1_9BILA2.800e-2757.45Hypothetical protein n=1 Tax=Adineta steineri TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13839contigM-pyrifera_M_contig13839:4399..6728 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score121.3
Seed ortholog evalue2.3e-25
Seed eggNOG ortholog2880.D7FTN7
Hectar predicted targeting categoryother localisation
EggNOG free text desc.dimethylhistidine N-methyltransferase activity
EggNOG OGs2QS9T@2759,COG4301@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size300
Cds size270
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13839.6081.1prot_M-pyrifera_M_contig13839.6081.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13839 4429..6728 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815827.2163382-UTR-M-pyrifera_M_contig13839:4398..44281622815827.2163382-UTR-M-pyrifera_M_contig13839:4398..4428Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13839 4399..4428 +
1692277592.0608208-UTR-M-pyrifera_M_contig13839:4398..44281692277592.0608208-UTR-M-pyrifera_M_contig13839:4398..4428Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13839 4399..4428 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815827.2284598-CDS-M-pyrifera_M_contig13839:4428..44911622815827.2284598-CDS-M-pyrifera_M_contig13839:4428..4491Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13839 4429..4491 +
1692277592.0723686-CDS-M-pyrifera_M_contig13839:4428..44911692277592.0723686-CDS-M-pyrifera_M_contig13839:4428..4491Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13839 4429..4491 +
1622815827.242974-CDS-M-pyrifera_M_contig13839:6521..67281622815827.242974-CDS-M-pyrifera_M_contig13839:6521..6728Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13839 6522..6728 +
1692277592.0848727-CDS-M-pyrifera_M_contig13839:6521..67281692277592.0848727-CDS-M-pyrifera_M_contig13839:6521..6728Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13839 6522..6728 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13839.6081.1

>prot_M-pyrifera_M_contig13839.6081.1 ID=prot_M-pyrifera_M_contig13839.6081.1|Name=mRNA_M-pyrifera_M_contig13839.6081.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=90bp
MRPDGRLSSLNQLVLKNCTREALQDYFDNTWTLTESLFASLQGEQAFMTL
PPYRLRHPLIFYYGHPAVLYVNKLRAAGIIHVREALTVA*
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mRNA from alignment at M-pyrifera_M_contig13839:4399..6728+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13839.6081.1 ID=mRNA_M-pyrifera_M_contig13839.6081.1|Name=mRNA_M-pyrifera_M_contig13839.6081.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2330bp|location=Sequence derived from alignment at M-pyrifera_M_contig13839:4399..6728+ (Macrocystis pyrifera P11B4 male)
ACTGGAAAACCGCTTCAACAGGTACCAGGCATGCGGCCGGACGGACGACT
TTCATCGTTGAACCAACTAGTGCTCAAGAATTGCACCAGAGAGGTGAGGA
GATGGTATGCATGCGCGATTCTCGGAATTGTGTGCAGACGTCAGCGATAC
ATGACCCACAGGATACACCATTAATAGTGTCCCGCTATATACTGCGTGGT
CCAACGACAAACTAATCTACCGTTAGCAAGGCATCCACTGTAATTGGACT
CTAAATTGTGGTTCAAGCTCGGGTGAGCTTGGGTATTCTTGCTTTATTCG
GTTCCTCTTATCCGCCGAACGCGTGTTTGGGATGTGTTTTTTTTTGTATG
AACGTCTTCTTTTTGCTGACGTTGGCGGTTGTTCGTAGAGCCCCCCCAGG
TACCGCTGCGACGAGTACCCAAAGGCACGTACGTACTGTATGTAGTACAA
TGACATGTCTTGTATTATAGCACCTGTTTGTCTGTTTTGTACGTGGAGTT
GACGATCGCCCTGGGCCCCCGACCATGCTCCGTGTAGTTTGTTGGGGGGT
CGGACAATCGGAGTACATACCGGTATCATCATCAGTGCGAGTTTGCCATC
CTGAAACAAGGTGTATACAGCAGTGTAGCATAGGCTTCAACGTTGAAACT
CATAAACAATCCCAAAAACATAGGACTGTGGGTTGGTTGGACTTCCCGAC
TAGTCACTAGTTGGCTAGCGAAGCCGACCGACTAACTGACTGTAGTTGAC
TAGTCGGCTGGCGCTATTTTGCCTATTATTAGTCTACCTGCCGACCTCTT
GCGCCTTTTCGTGACCGCGGCGCGTGTTATCTGCGACAGCGACAACAGTT
GTGCTTGGGGGGGCAGTCCCGCCTACTTCCTTCTAACCGCGTCGGAGCAT
AGTGAACCTATTGCTGTCTCTGGAAGTGGCGACACTAGAAAATATATCAA
TTCATTGACGCTGTCATTCCTATGCTCTAAGAAAATCCGCCTCAAAAGCG
GTTCTTAGTAGGATGCAGCTCACCCTTTATGCGACTCGCTCAACACCTCA
CGGCGCCTCGCGCTTGGTGCAAGCAATGTCTGCCTGGTCGGTAAAAACCC
GACGTGCTGCGTCCCGACATTGTACGGATGCGAGGGTCTATGATCTTACG
AGTACGACCATGCATGATAATGAGTGCACCCCCCGCCCCACCCCAACGCG
TCGGAGCAGTCGTGTGGCTCACTGGAGACATCACTACCTCCGTTTGCTTC
ACCGCCAAGCGGCTATGCGTTCTGGGCCCCCTTTTTCGCCTGACGCGTGG
TTTCGCCGGTTAATTCCGGCGCACTTGCTGCTTGCCCTTCGCCGCTAATC
CCTTGACGGGGATCGACGGTTCTACCCCCCCCCGTGTGTGTGTCGAAAGG
CATACGTGGTCAATGGTCAAATGACTAAGGCCATCAACAAGTGAGTACGC
CGCCCCCTCCCCACCCCTCTGCCCGTAAGATCGATTATACGGCCCCGCCT
GCGCAAACACACGAGTCGCGGGCGCCATCCACATATGCGAATCCTCCCCA
ACGTCAACGCCATATATCCTCTTGAAGTTTTTCTCCCCGCTCTTGATCCC
AGGCTTGGATTCCCTCCCTTCCACCTAAAGAGGAAGGGTGCCCTTCGAAG
GCACGGGGACACGTCAACGGGTCATGTCACGAGCGGTTTACGATGTGTCC
GACCCTTGGTCAACATTCTCATTGCATCGTGAGGGTGGATTCGCGGGGGG
ACCCATGCAAAGGAAACCCTGGTGAATTCGTCAACAGATTTGGATGTTCG
CTTCTGCTTACAGTGCCCTGGCCTGTAAAACAGTTGTAGCTTGAGCGGAG
CTTTCCGTAAAACGTCTCACCCGGAGATTTATTGCTCGGATTCGCTGTGG
TTGCACTCATAATATGATGCATACTCGTAACTGGACAGCACGAGGACACG
TCAACACTATACTACTGACAGTGCCTGATACCTCGTTGTTGACGTTTTCC
TCATGAAGAATTTCAAAGCATGAAAGAAAAGTTTCCAACTCGGATCCCGG
CCCATGCTTAGCTTGAGAACCTCGCGTTTTTTTGGGACTTGACTTCCAAC
CAACCCTCCTCCGTTCTTGGCAGGCGTTGCAGGACTACTTCGACAACACG
TGGACCTTGACAGAGAGTTTGTTCGCCAGCCTGCAAGGAGAGCAGGCGTT
TATGACGCTCCCGCCGTATAGACTACGCCACCCCCTCATCTTTTACTACG
GCCATCCGGCGGTCTTGTACGTGAACAAGCTGCGCGCTGCTGGGATCATC
CATGTGCGTGAAGCGCTAACCGTGGCGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13839:4399..6728+

>mRNA_M-pyrifera_M_contig13839.6081.1 ID=mRNA_M-pyrifera_M_contig13839.6081.1|Name=mRNA_M-pyrifera_M_contig13839.6081.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=540bp|location=Sequence derived from alignment at M-pyrifera_M_contig13839:4399..6728+ (Macrocystis pyrifera P11B4 male)
ATGCGGCCGGACGGACGACTTTCATCGTTGAACCAACTAGTGCTCAAGAA
TTGCACCAGAGAGATGCGGCCGGACGGACGACTTTCATCGTTGAACCAAC
TAGTGCTCAAGAATTGCACCAGAGAGGCGTTGCAGGACTACTTCGACAAC
ACGTGGACCTTGACAGAGAGTTTGTTCGCCAGCCTGCAAGGAGAGCAGGC
GTTTATGACGCTCCCGCCGTATAGACTACGCCACCCCCTCATCTTTTACT
ACGGCCATCCGGCGGTCTTGTACGTGAACAAGCTGCGCGCTGCTGGGATC
ATCCATGTGCGTGAAGCGCTAACCGTGGCGTAGGCGTTGCAGGACTACTT
CGACAACACGTGGACCTTGACAGAGAGTTTGTTCGCCAGCCTGCAAGGAG
AGCAGGCGTTTATGACGCTCCCGCCGTATAGACTACGCCACCCCCTCATC
TTTTACTACGGCCATCCGGCGGTCTTGTACGTGAACAAGCTGCGCGCTGC
TGGGATCATCCATGTGCGTGAAGCGCTAACCGTGGCGTAG
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