mRNA_M-pyrifera_M_contig13837.6080.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13837.6080.1
Unique NamemRNA_M-pyrifera_M_contig13837.6080.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig13837.6080.1 vs. uniprot
Match: D8LTI7_ECTSI (Rhodanese domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTI7_ECTSI)

HSP 1 Score: 391 bits (1005), Expect = 2.630e-120
Identity = 257/414 (62.08%), Postives = 286/414 (69.08%), Query Frame = 1 
Query:    1 KKLLQGYERGEGGLDDALACAFDFLNSDEGQSLAGGIVSHGERGLESLKMASKSKDGPVGKVLEHLADPGLEKRIMRGIEGIDTEELLETAGKAMSDADARTRLLDGIKNSTVDFLLEYLPHIEVPPISGTSSRVGYAITNLDLSGFRLRKEDVEVQLIDLSNGLEDAVKTGGSGDGXXXXXXXXXXXXXXXXXXXXXXXXSGARKDDEELAAVPWASL-----SRGGGEGDIRQQEAERPVPPSEVPPG---PQRTEGQQDTRRRGPDGFYEGGGGFQDGVEDASSMGDLGGGGRQGGDXXXXXXXXXPLPVVVEPREDMKPAEVLRVVARGVTAEFKTLQWACRQETFPYTRGTGTADATVVDGYVSLGFSIKRGIVDREKGVEGPLLLPSTRKVTLNCLLYVDLTVAKSRM 1218
            KKLL+GY++GE GLD+A+ CA DFLNS+EGQSLAGG+VS GERGLESLK  + SKDG VGKVL  LADPGLE+RI+ GIEG+DT+ELLETA KA+SD DART      K+STVDFLLEYLPHIEVPPISGTSSRVGYAITNLDLSGFRLRKEDV+VQL+DLS GLE AVK GGS +         XXXXXXXXXXXXXX           +AAVPW +      SR G    +   E  R    + V  G   P+  E  Q +      G +  G GF DG E  +  G +                    P V  PREDM PAEVLRVVARGV AEFKTLQWACRQETFPYT G GTADATVVDGYVSLGFSIKRGIVDREKG+EGPLL+ STR VTL+ L    LTVA  RM
Sbjct:  630 KKLLRGYQQGETGLDEAMTCALDFLNSEEGQSLAGGLVSQGERGLESLK--TMSKDGAVGKVLGQLADPGLERRILEGIEGLDTDELLETAEKAISDVDARTXXXXXXKDSTVDFLLEYLPHIEVPPISGTSSRVGYAITNLDLSGFRLRKEDVDVQLVDLSGGLEVAVKEGGSSNNGRDAISDGXXXXXXXXXXXXXX-----------MAAVPWGAAVKEASSRPGDGSFVSLPEQRRQAAYAAVLGGAGSPRLPEELQVSW-----GHHGEGKGFDDGAEAFAEDGGV----------------VSASPPVPPPREDMAPAEVLRVVARGVRAEFKTLQWACRQETFPYTYGNGTADATVVDGYVSLGFSIKRGIVDREKGIEGPLLVLSTRTVTLDRL---GLTVANCRM 1006
[Close]
BLAST of mRNA_M-pyrifera_M_contig13837.6080.1 vs. uniprot
Match: A0A835YIM8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIM8_9STRA)

HSP 1 Score: 150 bits (380), Expect = 6.420e-36
Identity = 172/475 (36.21%), Postives = 226/475 (47.58%), Query Frame = 1 
Query:    1 KKLLQGYERGEGGLDDALACAFDFLNSDEGQSLAGGIVSHGERGLESLKMASKSKDGPVGKVLEHLADPGLEKRIMRGIEGIDTEELLETAGKAMSDADARTRLLDGIK-----------------NSTVDFLLEYLPHIEVPPISGTS-SRVGYAITNLDLSGFRLRKEDVEVQLI--DLSNGLEDAVKTGGSGDGXXXXXXXXXXXXXXXXXXXXXXXX----------------------------------------SGARKDDEELAAVPWASLSRGGGEGDIRQQEAERP--------VPPSEVPPGPQRTEGQQDTRRRGPDGFYEGGGGFQDGVEDASSMGDLGGGGRQGGDXXXXXXXXXPLPVVVEPREDMKPA-EVLRVVARGVTAEFKTLQWACRQETFPYTRGTGTADATVVDGYVSLGFSIKRGIVDREKGVEGPLLLPSTRKVTLNCLLYVDLTVAKSRM 1218
            +++L+GY  G  GLDDA++ A ++LNS EG++ A  +V+ G R L  L+    S    V  +L  L DP LE RI   +EGID +  L+   +A++D  AR  LL  IK                 ++TV FLLEYLP +EVPPISG+S S V Y I NLDLSGF+LR EDVE+ L   D+ + L  A +   S   XXXXXXXXXXXXXXXXXXXXXXXX                                        + AR   +    +     +  G  G +                  P +V                       G    +   E A     LG   R+                +     D  PA EV  VVARGV A+F+ +QWA +QETFPY  GTGTADA VV+G V +GFS+KRG +    GVEGPLL+ S+R +T+  L    ++VA +R+
Sbjct:  531 RRVLEGYGSGAMGLDDAVSQAVEYLNSAEGEAAAASLVNSGGRHLAGLRSTGHS--AAVRGLLTRLGDPALEGRIKASVEGIDADRWLDMGERALTDEAARAALLTRIKXXXXXXXXXXXXXXXXXDATVAFLLEYLPTLEVPPISGSSASSVAYTIANLDLSGFQLRAEDVELALPTKDVLDALSAAAEPHPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIGPQPSTFTTSDPATARTAGDPTVPMSAERKTTAGSAGGVXXXXXXXXXXXXXXXAAAPQQVLAAAXXXXXXXXXXXXARXXSIAGAAQAEQPAEAAGRRDSLG---RRR---------------LRRKSADTPPAPEVFAVVARGVQAQFRGIQWAAKQETFPYGSGTGTADAMVVNGSVRIGFSLKRGTLG---GVEGPLLVMSSRTITMEAL---TVSVANTRL 979
[Close]
BLAST of mRNA_M-pyrifera_M_contig13837.6080.1 vs. uniprot
Match: A0A7S2E3J4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2E3J4_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 3.080e-19
Identity = 55/162 (33.95%), Postives = 95/162 (58.64%), Query Frame = 1 
Query:    1 KKLLQGYERGEGGLDDALACAFDFLNSDEGQSLAGGIVSHGERGLESLKMASKSKDGPVGKVLEHLADPGLEKRIMRGIEGIDTEELLETAGKAMSDADARTRLLDGIKNSTVDFLLEYLPHIEVPPISGTSSRVGYAITNLDLSGFRLRKEDVEVQLIDLS 486
            + L+   + G+   + A +  F  LNSD        +V + +  L+ L++     D    + L  L    +E++ M  IE ++ E+LLE A  AMS  +AR +L+D +K++ +DFLL+YLP + + PI G    + Y+++NLD+ GF+++KEDV+++L DLS
Sbjct:  194 RSLVTSVKDGKLDTNTAASQVFSTLNSDSFVDQLHKLVDNSDAVLDQLEVLKT--DSRFQRALSSLTSAEMEQKFMSNIETLNPEKLLEDAELAMSSNEARQKLVDSLKDAGLDFLLQYLPTMNIAPIEGEMDMLEYSVSNLDMGGFKIKKEDVQIELGDLS 353
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BLAST of mRNA_M-pyrifera_M_contig13837.6080.1 vs. uniprot
Match: A0A448Z622_9STRA (PDZ domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z622_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 6.310e-16
Identity = 52/159 (32.70%), Postives = 92/159 (57.86%), Query Frame = 1 
Query:    1 KKLLQGYERGEGGLDDALACAFDFLNSDEGQSLAGGIVSHGERGLESLKMASKSKDGPVGKVLEHLADPGLEK-RIMRGIEGIDTEELLETAGKAMSDADARTRLLDGIKNSTVDFLLEYLPHIEVPPISGTSSRVGYAITNLDLSGFRLRKEDVEVQL 474
            +K++ G       LD+ +    + LN D+  ++   +V HGE+ L++++  + +K   V   +      G+ K  +M GIE ID  ELL+ AG A++D  AR +LL    ++ +DF+L+ LP + VPP+ G    + Y I+NL + GF++RKE++ V++
Sbjct:  659 RKIVSGELTVSAVLDEVV----NVLNDDKVVAVGENLVKHGEKVLDAIEGVNGNK--VVDDAMRIAEKAGITKDTVMEGIEAIDVNELLDNAGNAITDEKARQKLLSDATDTALDFILKVLPSMPVPPVEGVKDGLVYKISNLSMEGFKVRKENIIVEI 811
[Close]
BLAST of mRNA_M-pyrifera_M_contig13837.6080.1 vs. uniprot
Match: B7GDP2_PHATC (Predicted protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GDP2_PHATC)

HSP 1 Score: 90.5 bits (223), Expect = 1.090e-15
Identity = 51/150 (34.00%), Postives = 85/150 (56.67%), Query Frame = 1 
Query:   28 GEGGLDDALACAFDFLNSDEGQSLAGGIVSHGERGLESLKMASKSKDGPVGKVLEHLADPGLEKR-IMRGIEGIDTEELLETAGKAMSDADARTRLLDGIKNSTVDFLLEYLPHIEVPPISGTSSRVGYAITNLDLSGFRLRKEDVEVQL 474
            GE  L   +  A   LN +   +    +V H E  L++++  S +K   +   ++     GL K  +M+ +E ++  ELL+TAG A++D +AR +LL    ++ +DF+L  LP + VPP  G    + Y I+NL L GFR+RKED++++L
Sbjct:  591 GELSLSSLMDEAISILNDENVVAAGESLVQHSENILDAIEGVSSNK--AINDAIQIAEKAGLTKEAVMKEVERLNMNELLDTAGSAVADEEARHKLLSTATDTALDFVLRILPSMPVPPFEGVRDGLIYNISNLSLEGFRVRKEDIQIEL 738
[Close]
BLAST of mRNA_M-pyrifera_M_contig13837.6080.1 vs. uniprot
Match: A0A1E7EW48_9STRA (PDZ domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EW48_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 2.500e-15
Identity = 45/137 (32.85%), Postives = 86/137 (62.77%), Query Frame = 1 
Query:   67 DFLNSDEGQSLAGGIVSHGERGLESLKMASKSKDGPVGKVLEHLADPGLEK-RIMRGIEGIDTEELLETAGKAMSDADARTRLLDGIKNSTVDFLLEYLPHIEVPPISGTSSRVGYAITNLDLSGFRLRKEDVEVQL 474
            + LN D+  ++   +V HGE+ L++++  + +K   V   ++     G+ K ++M GI+ ++  ELL++AG A++D  AR +LL    ++ +DF+L+ LP + VPP+ G    + Y I+NL L GF+++KE++ V++
Sbjct:  393 NILNDDKVVAVGENLVKHGEQVLDAIEGVNANK--VVDDAMKFAEKAGITKSKVMEGIDSLNVNELLDSAGNAITDETARIKLLSDATDTALDFILKVLPSMPVPPVEGVKDGLVYHISNLSLEGFKVKKENIIVEI 527
[Close]
BLAST of mRNA_M-pyrifera_M_contig13837.6080.1 vs. uniprot
Match: A0A7S2YNI5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YNI5_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 4.880e-15
Identity = 46/123 (37.40%), Postives = 77/123 (62.60%), Query Frame = 1 
Query:  109 IVSHGERGLESLKMASKSKDGPVGKVLEHLADPGLEK-RIMRGIEGIDTEELLETAGKAMSDADARTRLLDGIKNSTVDFLLEYLPHIEVPPISGTSSRVGYAITNLDLSGFRLRKEDVEVQL 474
             V HGE+ L++++  S +K   V   ++     G+ K  +M+ IE ID ++LL+TAG A++D   R +LL    ++ +DF+L  LP + VPP+ G    + Y I+NL + GF++RKED+++QL
Sbjct:  379 FVQHGEQVLDAIEGVSSNK--VVNDAMKIAEKAGITKDTVMKEIEKIDVDDLLDTAGGAVTDEKKRHQLLSSATDTALDFILRILPSMPVPPLDGVRDGLVYNISNLSMEGFKVRKEDIQIQL 499
[Close]
BLAST of mRNA_M-pyrifera_M_contig13837.6080.1 vs. uniprot
Match: A0A6U4CVW6_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4CVW6_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.160e-14
Identity = 49/144 (34.03%), Postives = 79/144 (54.86%), Query Frame = 1 
Query:   73 LNSDEGQSLAGGIVSHGERGLESLKMASKS--KDGPVGKVLEHLADPG---LEKRIMRGIEGIDTEELLETAGKAMSDADARTRLLDGIKNSTVDFLLEYLPHIEVPPISGTSSRVGYAITNLDLSGFRLRKEDVEVQLIDLSN 489
            L   E   L   + +  +   + +K   KS  K+  +  +L+HL   G   LE+ ++ G EG+D + LLE    A  + D R +L+D  KN+ ++F L+ LP +E+PP+ G S  + +++ NLDL G  L KEDV V +  L+N
Sbjct:  684 LRFSEDDKLNSRLQTFADTATKKIKKLKKSLGKNAQLQALLKHLGGSGGARLEQTLLAGAEGLDVDRLLEDFDGAFRERDKRQKLVDRAKNAALNFFLDLLPGLEIPPVEGESDGIEFSVGNLDLKGLTLDKEDVRVYIRGLTN 827
[Close]
BLAST of mRNA_M-pyrifera_M_contig13837.6080.1 vs. uniprot
Match: A0A7S2RI76_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RI76_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 2.780e-12
Identity = 47/135 (34.81%), Postives = 75/135 (55.56%), Query Frame = 1 
Query:   73 LNSDEGQSLAGGIVSHGERGLESLKMASKSKDGPVGKVLEHLADPGLEKR-IMRGIEGIDTEELLETAGKAMSDADARTRLLDGIKNSTVDFLLEYLPHIEVPPISGTSSRVGYAITNLDLSGFRLRKEDVEVQL 474
            LN ++  ++   +   GER  ++++ AS +K   V  V+  +   GL K  IM  +  +D   +L+TA  AM+D   R  LL    +S +DFLL  LP + VPP  G    + Y I+NL L GF+++KED+ V++
Sbjct:  269 LNDEKIVAVGENLAVEGERLFDAIENASGNKI--VNDVIVAVEKAGLTKENIMDHVNNLDINTILDTAETAMADETKREELLSSATDSALDFLLRVLPSMPVPPFDGVKDGLLYHISNLSLKGFKVKKEDIHVEI 401
[Close]
BLAST of mRNA_M-pyrifera_M_contig13837.6080.1 vs. uniprot
Match: A0A1Z5KET8_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KET8_FISSO)

HSP 1 Score: 77.4 bits (189), Expect = 1.880e-11
Identity = 45/135 (33.33%), Postives = 76/135 (56.30%), Query Frame = 1 
Query:   73 LNSDEGQSLAGGIVSHGERGLESLKMASKSKDGPVGKVLEHLADPGLEK-RIMRGIEGIDTEELLETAGKAMSDADARTRLLDGIKNSTVDFLLEYLPHIEVPPISGTSSRVGYAITNLDLSGFRLRKEDVEVQL 474
            LN D+  + +  IV H E  L++L+  S +K   V   ++     G+ K  +++    ++ +EL+ TAG A++D  AR +LL    ++ +DF L  LP + VPP  G    + Y I+NL + GFR++KED+ + L
Sbjct:  563 LNDDKVVAASETIVQHSEHVLDALEGVSGNK--AVADAIQIAERAGITKDSVLQEFGKLNVDELIGTAGTAVTDEKARQQLLSSATDAALDFALRVLPSMPVPPFEGVKDGLIYHISNLSMKGFRVKKEDIHIVL 695
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13837.6080.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D8LTI7_ECTSI2.630e-12062.08Rhodanese domain-containing protein n=2 Tax=Ectoca... [more]
A0A835YIM8_9STRA6.420e-3636.21Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2E3J4_9STRA3.080e-1933.95Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A448Z622_9STRA6.310e-1632.70PDZ domain-containing protein n=1 Tax=Pseudo-nitzs... [more]
B7GDP2_PHATC1.090e-1534.00Predicted protein n=3 Tax=Phaeodactylum tricornutu... [more]
A0A1E7EW48_9STRA2.500e-1532.85PDZ domain-containing protein n=1 Tax=Fragilariops... [more]
A0A7S2YNI5_9STRA4.880e-1537.40Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
A0A6U4CVW6_9STRA1.160e-1434.03Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S2RI76_9STRA2.780e-1234.81Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A1Z5KET8_FISSO1.880e-1133.33Uncharacterized protein n=2 Tax=Fistulifera solari... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13837contigM-pyrifera_M_contig13837:142..4116 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score327.4
Seed ortholog evalue8.5e-87
Seed eggNOG ortholog2880.D8LTI7
Hectar predicted targeting categoryother localisation
EggNOG OGs28JPJ@1,2QS2W@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size1253
Cds size1095
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13837.6080.1prot_M-pyrifera_M_contig13837.6080.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13837 289..4105 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815827.095086-UTR-M-pyrifera_M_contig13837:141..2881622815827.095086-UTR-M-pyrifera_M_contig13837:141..288Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13837 142..288 +
1692277591.967595-UTR-M-pyrifera_M_contig13837:141..2881692277591.967595-UTR-M-pyrifera_M_contig13837:141..288Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13837 142..288 +
1622815827.1803095-UTR-M-pyrifera_M_contig13837:4105..41161622815827.1803095-UTR-M-pyrifera_M_contig13837:4105..4116Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13837 4106..4116 +
1692277592.0470889-UTR-M-pyrifera_M_contig13837:4105..41161692277592.0470889-UTR-M-pyrifera_M_contig13837:4105..4116Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13837 4106..4116 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815827.1048872-CDS-M-pyrifera_M_contig13837:288..3991622815827.1048872-CDS-M-pyrifera_M_contig13837:288..399Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13837 289..399 +
1692277591.9777126-CDS-M-pyrifera_M_contig13837:288..3991692277591.9777126-CDS-M-pyrifera_M_contig13837:288..399Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13837 289..399 +
1622815827.1146004-CDS-M-pyrifera_M_contig13837:1096..12101622815827.1146004-CDS-M-pyrifera_M_contig13837:1096..1210Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13837 1097..1210 +
1692277591.9943898-CDS-M-pyrifera_M_contig13837:1096..12101692277591.9943898-CDS-M-pyrifera_M_contig13837:1096..1210Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13837 1097..1210 +
1622815827.1244555-CDS-M-pyrifera_M_contig13837:2341..24951622815827.1244555-CDS-M-pyrifera_M_contig13837:2341..2495Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13837 2342..2495 +
1692277592.0062625-CDS-M-pyrifera_M_contig13837:2341..24951692277592.0062625-CDS-M-pyrifera_M_contig13837:2341..2495Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13837 2342..2495 +
1622815827.1439962-CDS-M-pyrifera_M_contig13837:2579..30701622815827.1439962-CDS-M-pyrifera_M_contig13837:2579..3070Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13837 2580..3070 +
1692277592.015509-CDS-M-pyrifera_M_contig13837:2579..30701692277592.015509-CDS-M-pyrifera_M_contig13837:2579..3070Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13837 2580..3070 +
1622815827.1566422-CDS-M-pyrifera_M_contig13837:3367..34961622815827.1566422-CDS-M-pyrifera_M_contig13837:3367..3496Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13837 3368..3496 +
1692277592.024943-CDS-M-pyrifera_M_contig13837:3367..34961692277592.024943-CDS-M-pyrifera_M_contig13837:3367..3496Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13837 3368..3496 +
1622815827.1684606-CDS-M-pyrifera_M_contig13837:4009..41051622815827.1684606-CDS-M-pyrifera_M_contig13837:4009..4105Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13837 4010..4105 +
1692277592.0346-CDS-M-pyrifera_M_contig13837:4009..41051692277592.0346-CDS-M-pyrifera_M_contig13837:4009..4105Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13837 4010..4105 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13837.6080.1

>prot_M-pyrifera_M_contig13837.6080.1 ID=prot_M-pyrifera_M_contig13837.6080.1|Name=mRNA_M-pyrifera_M_contig13837.6080.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=365bp
MASKSKDGPVGKVLEHLADPGLEKRIMRGIEGIDTEELLETAGKAMSDAD
ARTRLLDGIKNSTVDFLLEYLPHIEVPPISGTSSRVGYAITNLDLSGFRL
RKEDVEVQLIDLSNGLEDAVKTGGSGDGGDGGGDDGGGGGGGGGGGDSSF
LDSGARKDDEELAAVPWASLSRGGGEGDIRQQEAERPVPPSEVPPGPQRT
EGQQDTRRRGPDGFYEGGGGFQDGVEDASSMGDLGGGGRQGGDGDGGGAA
AAPLPVVVEPREDMKPAEVLRVVARGVTAEFKTLQWACRQETFPYTRGTG
TADATVVDGYVSLGFSIKRGIVDREKGVEGPLLLPSTRKVTLNCLLYVDL
TVAKSRMECGLSTS*
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mRNA from alignment at M-pyrifera_M_contig13837:142..4116+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13837.6080.1 ID=mRNA_M-pyrifera_M_contig13837.6080.1|Name=mRNA_M-pyrifera_M_contig13837.6080.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3975bp|location=Sequence derived from alignment at M-pyrifera_M_contig13837:142..4116+ (Macrocystis pyrifera P11B4 male)
AAGAAGCTTCTCCAGGGGTACGAGCGCGGGGAAGGCGGGCTGGACGACGC
CCTAGCCTGCGCCTTCGACTTCCTCAACTCGGACGAGGGGCAGTCCTTGG
CTGGAGGCATTGTCTCGCACGGGGAGCGGGGACTGGAGTCTCTGAAGATG
GCCTCCAAGTCGAAGGACGGGCCGGTGGGGAAGGTGCTGGAGCACCTCGC
CGATCCGGGCTTGGAGAAGAGGATAATGCGGGGCATTGAGGGGATTGATA
CTGAGGAGGTGAGGAGGTCAGACTGAACTGTTTTTGGGATGAGTTGGGTT
GGGTTGGGTTGGGTTGCGTTGCGTTAAGTTGGATTGCGTTGCGTTGGGCT
GTGTTGGGTTGGGTTGGGATCGGTTGGGTTGGGTTGGGTTGGGTTGGGTT
GGGTTGGATTGGGTTGGGTTGGTTTTGAGTAGGGTTGGTTGGGTTGAGGT
GAGTTGGGTTGGGTTAAGGTGGTATGGGTGTTCGGGTTGGTTGGGGTGGT
TTTCTGGTCGGTTGGGGCTGGCTTGCCTTGGCGTGCCTTAGATGGGTTAG
GTTGGTTTAGGGGTTGGGTTGGCCTGGGCTGGACCGAAGTGGCTGGTGAA
TTGGGATGATATAGGGGGGGAGGGGGGGTGCTACAGAAGACAAATTGATC
GTAGCCATTTTGTTGTTGTTTGGTTGCTCTCTTATGGGGCTTGTTACTTG
CGCTGTCTGTTTTATCCTCTCTTTTAGTTTTTCTCTCTTTTCCTCCCTCC
CGCCCCCCCCCCCCACCTCTCTCCCTTCGTTTCGCTGTTGTTCCCCTATC
TTGTGGTTTTTCCCGTCGTTTCTTGTTTCGCGTTTGGCGTTTTTCCTCTC
CGCACCTTGCTCCGCCTTTGTATACATGTGTTCAATTTATTTGTTATCTT
TCGATGCCCTTATCGATGCCTTCTTTTGTCCATTCGTCTGCGAGAACACT
CACAGCTCCTGGAGACGGCCGGGAAGGCGATGTCGGACGCTGATGCTCGC
ACGCGACTGCTCGACGGCATCAAAAACTCCACTGTCGACTTCTTGCTCGA
GTACCTGCCGCACATCGAGGTGAGAGGAGTGTATATGCGGGGGGGCATGT
AAAGAGGACCAGATATTGTTGGTAAAAACATGGAAATATATGAGTGTTTG
TGTGTACGGTAGGTCCTATTTACTGTGTGGTCCCCCGTAATGGTGCGAGC
TAGTGCGACTTTCTAAATTTGACCGCGCTTACGAATAGGGGGGCTCCTGC
CGCAATCGCTGTATCCTGTGTTTACGCCCGACTATCTACGCACGACCACG
ACGAATCTCCGAAAAAATCGTAGCGGATCAACACCATACGTCACGACAAC
AGCAACCACTACCTCTACTACCGTCCACCGTGCACCAACGCACAGGTTGA
TGGTAGTTACGAATATCCTGCTGAGCGAGTTCCTTAGCGATAGTTATATG
TTCTTACATGTAGCAAATAGCAGCAGCAGTAGCAGTAGTAGTAGTAGTAG
TAGTAGTAGTAATGGTACTAGTAGTTGTAGTAGTAGTTGCAGCAGTATTA
GTAGTAGTTGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTGGTAGT
AGTAGTAGTAGTAGTAGTAGTAGCGGTAGTAGTAGTAGTAGTAGTAGTAG
TAGTAGTAGCGCAGTATGATGGCAGTAGCAGTAGCAACACGATAACAGTA
GCAAGAATAACAGTAGCAATGGCAGTCGCATACACCCATCCTCGCTACGC
TTGCTTGGTTGTCTGGCAAGGTCACTTGGTTGCCAGCGCCACAGAGCACG
GCCCTCGATGGCGCGGCGGTCCCGCGAGGCCGTCGCAAGGCATCCGTAGC
AAGCCTTCCGCCTGCTGTCTAGGCTGGGGTAGCGGCTTGGGGCGCGCATG
GACGAACGCCTGGAGTACCGCACCGAGCCGCATGTCGTAGTTGAGTTTTC
TTGTTTCATAATAACGATCTGGAAACAATGAGTTGATCGTCACAGTACGT
TCGATCTCTGGAAACACCTGGGAGGGGTCGTAGAACGGAAGCCACTTCGC
CGGCATCTTGTGAAGATGAATATGTACCCCCCACGCCCGTCCCGAAAAGG
ATGCGTGGTCAATGGTCAAATGACTAAGGCAAGCAGTAAATGGGTCCGCC
CCCCCCCACATCCCCCCGCCCCCCCGCCTCCCTCCGCTTCCGGAACAAAG
GTTCCCCCTATATCGGGCACGAGCTCTCGGGTCGGGTACGCCATCACGAA
CCTCGATCTGTCCGGCTTCCGGCTTCGGAAGGAGGACGTCGAGGTGCAGC
TGATAGACCTTTCAAATGGTCTGGAAGACGCTGTCAAGACGGGCGGTAGT
GGTGGTAATGGCGGTAGTGGCTATGGTGGTGCAGGTGCTGCTGGTGCTAC
TGGTAGCAGTGATTTCCCTCAAGGTAGCGAAGGGCAAGACGGCGGCGACG
GCGGCGGCGACGATGGCGGCGGTGGCGGCGGCGGCGGCGGCGGCGGCGAC
AGCAGTTTCTTGGATAGCGGTGCGAGGAAGGACGACGAGGAGTTGGCGGC
CGTCCCATGGGCGTCTTTGTCCCGGGGGGGGGGGGAGGGCGACATCAGAC
AACAGGAGGCGGAACGCCCGGTGCCACCGTCGGAAGTCCCGCCGGGGCCC
CAGCGCACCGAAGGACAACAAGACACCCGGAGGCGTGGGCCGGACGGCTT
TTATGAAGGCGGAGGGGGTTTCCAAGACGGCGTTGAGGATGCTTCTTCGA
TGGGGGATTTGGGGGGCGGGGGTCGGCAGGGCGGTGACGGCGATGGCGGC
GGCGCAGCCGCCGCCCCCCTTCCCGTCGTTGTGGAGCCGCGGGAAGACAT
GAAACCTGCCGAAGTGCTGAGAGTGGTGGCGCGGGGGGTTACGGCGGAGT
TCAAGACTTTGCAGTGGGCGTGTCGACAAGTGGGGATCATCGTGTCTTGG
TTTCCGCTGAGAGTGTGTTTTGGTTGCTGTTCGCTTGGTTGCTTGCTGCG
CGTAGGCTCTCGCCGTTGGCGAAGAGCGGAAGGGGAACAGAGGGCCCTCC
TGAGACAAAAAAAAACACTCATCATGGCATTTGTCGTGTCGTTGTCGATA
TCGTTATAGATATCGTTTATCGTTTTAGTTATCGTTTATCGTTATCGGTA
TCATTGTGTTCATCGTTAACGATATCATCATCGTTGCCGCTATCGCTGTC
GTTCTCGCTCCCCTCGTCCTTATCAGGAAACGTTCCCCTACACCCGCGGC
ACGGGCACCGCCGACGCTACCGTGGTTGACGGTTACGTTTCCCTAGGGTT
TTCCATCAAGAGAGGCATTGTCGACCGGGAAAAGGGGGTTGAGGGTCCCC
TACTTGTGAGTACTCAGGAGGACAGGGAGGGTTAGGGTCACATTGGTTCG
CTCTGCAATATAGTTTGGTTTGGGCAGCAAGCGGCATCATGTTGTGCGCA
CCTCGCGCTGCTGTTAGAAAAACTAGAAGAAATTCCACGTTTTTGTTGTT
GGTTTTTTTGTTCCGTTATTTATCGCACAAGGGGAATGATCGTATCACAT
TCCTGGCAGTGGGTAGATCGCAAGGCATCCACAAAGCAGATACATAGTAT
GCGCATTGCTATCTCTAGAAATGGCCATATCAGAAAACAACCACCGCCGC
CCCACAAACGGTGCTTGATAGGATGCAGCTCACCCTTCATGCAACTCGCC
CAACACCTCACGGTGCTTTGCGCCTGGTGCAGAGAGTGTCTGCCTGGTCG
ATGAAAAACCGAACGTGCTCCGTCCCAGCATTGTAGAGATGCGAAGGTCT
ATGGTAATACATACGACTACGGCCATGACACGAGTACACCCCCCCCTCTC
CCTACAACTGCCTGCCAGTTGCCGTCAACCCGCAAGGTGACCCTGAACTG
TCTACTGTATGTAGACCTTACCGTCGCCAAATCCCGTATGGAGTGTGGCT
TGTCAACCTCCTGACCAACCTGTAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13837:142..4116+

>mRNA_M-pyrifera_M_contig13837.6080.1 ID=mRNA_M-pyrifera_M_contig13837.6080.1|Name=mRNA_M-pyrifera_M_contig13837.6080.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2190bp|location=Sequence derived from alignment at M-pyrifera_M_contig13837:142..4116+ (Macrocystis pyrifera P11B4 male)
ATGGCCTCCAAGTCGAAGGACGGGCCGGTGGGGAAGGTGCTGGAGCACCT
CGCCGATCCGGGCTTGGAGAAGAGGATAATGCGGGGCATTGAGGGGATTG
ATACTGAGGAGATGGCCTCCAAGTCGAAGGACGGGCCGGTGGGGAAGGTG
CTGGAGCACCTCGCCGATCCGGGCTTGGAGAAGAGGATAATGCGGGGCAT
TGAGGGGATTGATACTGAGGAGCTCCTGGAGACGGCCGGGAAGGCGATGT
CGGACGCTGATGCTCGCACGCGACTGCTCGACGGCATCAAAAACTCCACT
GTCGACTTCTTGCTCGAGTACCTGCCGCACATCGAGCTCCTGGAGACGGC
CGGGAAGGCGATGTCGGACGCTGATGCTCGCACGCGACTGCTCGACGGCA
TCAAAAACTCCACTGTCGACTTCTTGCTCGAGTACCTGCCGCACATCGAG
GTTCCCCCTATATCGGGCACGAGCTCTCGGGTCGGGTACGCCATCACGAA
CCTCGATCTGTCCGGCTTCCGGCTTCGGAAGGAGGACGTCGAGGTGCAGC
TGATAGACCTTTCAAATGGTCTGGAAGACGCTGTCAAGACGGGCGGTAGT
GGTGGTTCCCCCTATATCGGGCACGAGCTCTCGGGTCGGGTACGCCATCA
CGAACCTCGATCTGTCCGGCTTCCGGCTTCGGAAGGAGGACGTCGAGGTG
CAGCTGATAGACCTTTCAAATGGTCTGGAAGACGCTGTCAAGACGGGCGG
TAGTGGTGACGGCGGCGACGGCGGCGGCGACGATGGCGGCGGTGGCGGCG
GCGGCGGCGGCGGCGGCGACAGCAGTTTCTTGGATAGCGGTGCGAGGAAG
GACGACGAGGAGTTGGCGGCCGTCCCATGGGCGTCTTTGTCCCGGGGGGG
GGGGGAGGGCGACATCAGACAACAGGAGGCGGAACGCCCGGTGCCACCGT
CGGAAGTCCCGCCGGGGCCCCAGCGCACCGAAGGACAACAAGACACCCGG
AGGCGTGGGCCGGACGGCTTTTATGAAGGCGGAGGGGGTTTCCAAGACGG
CGTTGAGGATGCTTCTTCGATGGGGGATTTGGGGGGCGGGGGTCGGCAGG
GCGGTGACGGCGATGGCGGCGGCGCAGCCGCCGCCCCCCTTCCCGTCGTT
GTGGAGCCGCGGGAAGACATGAAACCTGCCGAAGTGCTGAGAGTGGTGGC
GCGGGGGGTTACGGCGGAGTTCAAGACTTTGCAGTGGGCGTGTCGACAAA
CGGCGGCGACGGCGGCGGCGACGATGGCGGCGGTGGCGGCGGCGGCGGCG
GCGGCGGCGACAGCAGTTTCTTGGATAGCGGTGCGAGGAAGGACGACGAG
GAGTTGGCGGCCGTCCCATGGGCGTCTTTGTCCCGGGGGGGGGGGGAGGG
CGACATCAGACAACAGGAGGCGGAACGCCCGGTGCCACCGTCGGAAGTCC
CGCCGGGGCCCCAGCGCACCGAAGGACAACAAGACACCCGGAGGCGTGGG
CCGGACGGCTTTTATGAAGGCGGAGGGGGTTTCCAAGACGGCGTTGAGGA
TGCTTCTTCGATGGGGGATTTGGGGGGCGGGGGTCGGCAGGGCGGTGACG
GCGATGGCGGCGGCGCAGCCGCCGCCCCCCTTCCCGTCGTTGTGGAGCCG
CGGGAAGACATGAAACCTGCCGAAGTGCTGAGAGTGGTGGCGCGGGGGGT
TACGGCGGAGTTCAAGACTTTGCAGTGGGCGTGTCGACAAGAAACGTTCC
CCTACACCCGCGGCACGGGCACCGCCGACGCTACCGTGGTTGACGGTTAC
GTTTCCCTAGGGTTTTCCATCAAGAGAGGCATTGTCGACCGGGAAAAGGG
GGTTGAGGGTCCCCTACTTGAAACGTTCCCCTACACCCGCGGCACGGGCA
CCGCCGACGCTACCGTGGTTGACGGTTACGTTTCCCTAGGGTTTTCCATC
AAGAGAGGCATTGTCGACCGGGAAAAGGGGGTTGAGGGTCCCCTACTTTT
GCCGTCAACCCGCAAGGTGACCCTGAACTGTCTACTGTATGTAGACCTTA
CCGTCGCCAAATCCCGTATGGAGTGTGGCTTGTCAACCTCCTGATTGCCG
TCAACCCGCAAGGTGACCCTGAACTGTCTACTGTATGTAGACCTTACCGT
CGCCAAATCCCGTATGGAGTGTGGCTTGTCAACCTCCTGA
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