mRNA_M-pyrifera_M_contig13787.6073.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13787.6073.1
Unique NamemRNA_M-pyrifera_M_contig13787.6073.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig13787.6073.1 vs. uniprot
Match: D8LEQ8_ECTSI (EGF-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEQ8_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 1.060e-31
Identity = 53/58 (91.38%), Postives = 56/58 (96.55%), Query Frame = 1
Query:    1 GPGKRWKFSIAYDGLSMMVFGGHRLWHGFATDNSERNSWSSFEDYPKGGYLQDLWVYT 174
            GPGKRWKFS+AYDGLSMMVFGGHRLWHGFATDNSE NSWSSF +YP+GGYLQDLWVYT
Sbjct:  283 GPGKRWKFSVAYDGLSMMVFGGHRLWHGFATDNSEANSWSSFAEYPEGGYLQDLWVYT 340          
BLAST of mRNA_M-pyrifera_M_contig13787.6073.1 vs. uniprot
Match: A0A1V9ZJ82_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZJ82_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.030e-21
Identity = 39/58 (67.24%), Postives = 45/58 (77.59%), Query Frame = 1
Query:    1 GPGKRWKFSIAYDGLSMMVFGGHRLWHGFATDNSERNSWSSFEDYPKGGYLQDLWVYT 174
            GPGKRWKFS + DG +M VFGG+RLWHGFA  NS+ N WS +  YPKGGYL DLW +T
Sbjct:  163 GPGKRWKFSSSGDGAAMYVFGGYRLWHGFAPQNSQANLWSDYSAYPKGGYLADLWRFT 220          
BLAST of mRNA_M-pyrifera_M_contig13787.6073.1 vs. uniprot
Match: A0A835Z8A8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8A8_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 3.690e-21
Identity = 39/58 (67.24%), Postives = 45/58 (77.59%), Query Frame = 1
Query:    1 GPGKRWKFSIAYDGLSMMVFGGHRLWHGFATDNSERNSWSSFEDYPKGGYLQDLWVYT 174
            GPGKRWKFS+A DG  M +FGGHRLW GFA+DNS+ N W+S    P GGYL DLW+YT
Sbjct:  246 GPGKRWKFSVASDGARMFIFGGHRLWQGFASDNSQDNDWNSTALLPAGGYLSDLWIYT 303          
BLAST of mRNA_M-pyrifera_M_contig13787.6073.1 vs. uniprot
Match: A0A7S1U6W4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U6W4_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 7.390e-21
Identity = 37/57 (64.91%), Postives = 46/57 (80.70%), Query Frame = 1
Query:    4 PGKRWKFSIAYDGLSMMVFGGHRLWHGFATDNSERNSWSSFEDYPKGGYLQDLWVYT 174
            P KRW+FS+   GLSM++FGGHRLWHGFA DNS  N WSS++  P+GGY+ DLWV+T
Sbjct:  168 PKKRWRFSLLSRGLSMVMFGGHRLWHGFAADNSFDNKWSSYDLLPEGGYMDDLWVFT 224          
BLAST of mRNA_M-pyrifera_M_contig13787.6073.1 vs. uniprot
Match: A0A1V9YJW2_9STRA (EGF-like domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YJW2_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 2.870e-19
Identity = 37/58 (63.79%), Postives = 43/58 (74.14%), Query Frame = 1
Query:    1 GPGKRWKFSIAYDGLSMMVFGGHRLWHGFATDNSERNSWSSFEDYPKGGYLQDLWVYT 174
            GPGKRWKFS +    SM +FGG+RLWHGFA  NSE N WS +  YPKGGYL DLW ++
Sbjct:   38 GPGKRWKFSSSSSATSMYIFGGYRLWHGFAPQNSESNLWSDYSLYPKGGYLSDLWEFS 95          
BLAST of mRNA_M-pyrifera_M_contig13787.6073.1 vs. uniprot
Match: A0A7S2G1Z8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G1Z8_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 4.210e-19
Identity = 33/56 (58.93%), Postives = 42/56 (75.00%), Query Frame = 1
Query:    4 PGKRWKFSIAYDGLSMMVFGGHRLWHGFATDNSERNSWSSFEDYPKGGYLQDLWVY 171
            PGKR+KFS+  +G +M +FGG RLWHG+A+DNS  N W S + YP GGYL D+W Y
Sbjct:   37 PGKRYKFSVVTNGETMWMFGGFRLWHGYASDNSWENDWDSHDVYPSGGYLNDMWTY 92          
BLAST of mRNA_M-pyrifera_M_contig13787.6073.1 vs. uniprot
Match: A0A067CIQ6_SAPPC (EGF-like domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CIQ6_SAPPC)

HSP 1 Score: 87.4 bits (215), Expect = 1.000e-18
Identity = 36/57 (63.16%), Postives = 42/57 (73.68%), Query Frame = 1
Query:    1 GPGKRWKFSIAYDGLSMMVFGGHRLWHGFATDNSERNSWSSFEDYPKGGYLQDLWVY 171
            GPGKRWKFS + DG +M +FGG+R+WHGFA  NS  N WS    YPKGGYL DLW +
Sbjct:  199 GPGKRWKFSSSGDGTNMYIFGGYRIWHGFAPQNSRANRWSDHTIYPKGGYLADLWQF 255          
BLAST of mRNA_M-pyrifera_M_contig13787.6073.1 vs. uniprot
Match: A0A7S2LC70_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LC70_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 2.890e-18
Identity = 35/59 (59.32%), Postives = 45/59 (76.27%), Query Frame = 1
Query:    1 GPGKRWKFSIAYDGLS-MMVFGGHRLWHGFATDNSERNSWSSFEDYPKGGYLQDLWVYT 174
            GPG+RWKFS+  D  S + +FGGHRLWHGF++DN+  N W + E  PKGGYL DLW+Y+
Sbjct:    6 GPGERWKFSMVADSSSNIYIFGGHRLWHGFSSDNNFENRWENSELLPKGGYLDDLWMYS 64          
BLAST of mRNA_M-pyrifera_M_contig13787.6073.1 vs. uniprot
Match: T0QIK0_SAPDV (EGF-like domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QIK0_SAPDV)

HSP 1 Score: 85.9 bits (211), Expect = 3.490e-18
Identity = 35/57 (61.40%), Postives = 42/57 (73.68%), Query Frame = 1
Query:    1 GPGKRWKFSIAYDGLSMMVFGGHRLWHGFATDNSERNSWSSFEDYPKGGYLQDLWVY 171
            GPGKRWKFS + DG +M +FGG+R+WHGFA  NS  N WS    YP+GGYL DLW +
Sbjct:  214 GPGKRWKFSSSGDGTNMYIFGGYRIWHGFAPQNSRANRWSDHTIYPEGGYLADLWQF 270          
BLAST of mRNA_M-pyrifera_M_contig13787.6073.1 vs. uniprot
Match: A0A813BNU4_9DINO (Tnr protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813BNU4_9DINO)

HSP 1 Score: 85.5 bits (210), Expect = 4.770e-18
Identity = 32/57 (56.14%), Postives = 41/57 (71.93%), Query Frame = 1
Query:    1 GPGKRWKFSIAYDGLSMMVFGGHRLWHGFATDNSERNSWSSFEDYPKGGYLQDLWVY 171
            GPG+RW+ ++  DG  M +FGGHR+WHGF  DN+  NSW   + +P GGYL DLWVY
Sbjct:  219 GPGRRWRATVVGDGTHMFLFGGHRMWHGFGKDNTRSNSWQFLDQFPLGGYLDDLWVY 275          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13787.6073.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEQ8_ECTSI1.060e-3191.38EGF-like domain-containing protein n=1 Tax=Ectocar... [more]
A0A1V9ZJ82_9STRA1.030e-2167.24Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A835Z8A8_9STRA3.690e-2167.24Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1U6W4_9STRA7.390e-2164.91Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A1V9YJW2_9STRA2.870e-1963.79EGF-like domain-containing protein n=1 Tax=Thraust... [more]
A0A7S2G1Z8_9STRA4.210e-1958.93Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A067CIQ6_SAPPC1.000e-1863.16EGF-like domain-containing protein n=1 Tax=Saprole... [more]
A0A7S2LC70_9STRA2.890e-1859.32Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
T0QIK0_SAPDV3.490e-1861.40EGF-like domain-containing protein n=1 Tax=Saprole... [more]
A0A813BNU4_9DINO4.770e-1856.14Tnr protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13787contigM-pyrifera_M_contig13787:8250..8423 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.1
Seed ortholog evalue2.7e-27
Seed eggNOG ortholog2880.D8LEQ8
KEGG koko:K16474
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.regulation of canonical Wnt signaling pathway involved in osteoblast differentiation
EggNOG OGsKOG1225@1,KOG1225@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons1
Model size174
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815826.4860904-CDS-M-pyrifera_M_contig13787:8249..84231622815826.4860904-CDS-M-pyrifera_M_contig13787:8249..8423Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13787 8250..8423 +
1692277591.5430834-CDS-M-pyrifera_M_contig13787:8249..84231692277591.5430834-CDS-M-pyrifera_M_contig13787:8249..8423Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13787 8250..8423 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13787.6073.1prot_M-pyrifera_M_contig13787.6073.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13787 8250..8423 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13787.6073.1

>prot_M-pyrifera_M_contig13787.6073.1 ID=prot_M-pyrifera_M_contig13787.6073.1|Name=mRNA_M-pyrifera_M_contig13787.6073.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=58bp
GPGKRWKFSIAYDGLSMMVFGGHRLWHGFATDNSERNSWSSFEDYPKGGY
LQDLWVYT
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mRNA from alignment at M-pyrifera_M_contig13787:8250..8423+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13787.6073.1 ID=mRNA_M-pyrifera_M_contig13787.6073.1|Name=mRNA_M-pyrifera_M_contig13787.6073.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=174bp|location=Sequence derived from alignment at M-pyrifera_M_contig13787:8250..8423+ (Macrocystis pyrifera P11B4 male)
GGCCCGGGGAAGCGCTGGAAGTTTTCCATAGCGTACGATGGCCTTTCGAT GATGGTCTTCGGGGGACACCGCCTGTGGCACGGCTTCGCGACGGACAACT CAGAGAGAAACTCTTGGTCGAGCTTCGAGGATTACCCCAAGGGCGGATAC CTTCAAGACCTGTGGGTGTACACC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13787:8250..8423+

>mRNA_M-pyrifera_M_contig13787.6073.1 ID=mRNA_M-pyrifera_M_contig13787.6073.1|Name=mRNA_M-pyrifera_M_contig13787.6073.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=348bp|location=Sequence derived from alignment at M-pyrifera_M_contig13787:8250..8423+ (Macrocystis pyrifera P11B4 male)
GGCCCGGGGAAGCGCTGGAAGTTTTCCATAGCGTACGATGGCCTTTCGAT
GATGGTCTTCGGGGGACACCGCCTGTGGCACGGCTTCGCGACGGACAACT
CAGAGAGAAACTCTTGGTCGAGCTTCGAGGATTACCCCAAGGGCGGATAC
CTTCAAGACCTGTGGGTGTACACCGGCCCGGGGAAGCGCTGGAAGTTTTC
CATAGCGTACGATGGCCTTTCGATGATGGTCTTCGGGGGACACCGCCTGT
GGCACGGCTTCGCGACGGACAACTCAGAGAGAAACTCTTGGTCGAGCTTC
GAGGATTACCCCAAGGGCGGATACCTTCAAGACCTGTGGGTGTACACC
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