mRNA_M-pyrifera_M_contig1378.6071.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1378.6071.1
Unique NamemRNA_M-pyrifera_M_contig1378.6071.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1378.6071.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1378contigM-pyrifera_M_contig1378:8749..11125 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size353
Cds size183
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1378.6071.1prot_M-pyrifera_M_contig1378.6071.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1378 8800..9500 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815826.3271086-UTR-M-pyrifera_M_contig1378:8748..87991622815826.3271086-UTR-M-pyrifera_M_contig1378:8748..8799Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1378 8749..8799 -
1692277591.4517596-UTR-M-pyrifera_M_contig1378:8748..87991692277591.4517596-UTR-M-pyrifera_M_contig1378:8748..8799Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1378 8749..8799 -
1622815826.36421-UTR-M-pyrifera_M_contig1378:9500..95371622815826.36421-UTR-M-pyrifera_M_contig1378:9500..9537Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1378 9501..9537 -
1692277591.4866922-UTR-M-pyrifera_M_contig1378:9500..95371692277591.4866922-UTR-M-pyrifera_M_contig1378:9500..9537Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1378 9501..9537 -
1622815826.3751156-UTR-M-pyrifera_M_contig1378:11043..111251622815826.3751156-UTR-M-pyrifera_M_contig1378:11043..11125Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1378 11044..11125 -
1692277591.5009491-UTR-M-pyrifera_M_contig1378:11043..111251692277591.5009491-UTR-M-pyrifera_M_contig1378:11043..11125Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1378 11044..11125 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815826.341832-CDS-M-pyrifera_M_contig1378:8799..89591622815826.341832-CDS-M-pyrifera_M_contig1378:8799..8959Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1378 8800..8959 -
1692277591.4663978-CDS-M-pyrifera_M_contig1378:8799..89591692277591.4663978-CDS-M-pyrifera_M_contig1378:8799..8959Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1378 8800..8959 -
1622815826.3537972-CDS-M-pyrifera_M_contig1378:9477..95001622815826.3537972-CDS-M-pyrifera_M_contig1378:9477..9500Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1378 9478..9500 -
1692277591.4770987-CDS-M-pyrifera_M_contig1378:9477..95001692277591.4770987-CDS-M-pyrifera_M_contig1378:9477..9500Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1378 9478..9500 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1378.6071.1

>prot_M-pyrifera_M_contig1378.6071.1 ID=prot_M-pyrifera_M_contig1378.6071.1|Name=mRNA_M-pyrifera_M_contig1378.6071.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=61bp
MTVMRSASPSVMFCRCRPRSGSSESYGSSYSSRKGTGSTVGGVAPFSLPR
LRHSDEWLFI*
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mRNA from alignment at M-pyrifera_M_contig1378:8749..11125-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1378.6071.1 ID=mRNA_M-pyrifera_M_contig1378.6071.1|Name=mRNA_M-pyrifera_M_contig1378.6071.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2377bp|location=Sequence derived from alignment at M-pyrifera_M_contig1378:8749..11125- (Macrocystis pyrifera P11B4 male)
GGTCAAAACCGACGGAATCAACAGGTGGTACGACGGTACGGTTGAGGAAG
TCAAGTACGAGGACGGAAAACGCCTATTGAAGGTGAGACCCCTCGCCCTA
CAAAAAAGCTTTGGGCGGAACCCACAGGACAAAACCCCCCCTGGGATCGT
TGCTTGAACCTCTTTTATTCTAAATATGGAGCCACACAGAACGAGAATGG
TGTCTCCGGACAGACCTTCCCCGAGATCATTCCGAAAACGCATCGCTCGG
CCTTTGCGTATCCCCGCTCTGGAGAAAATCAGTGGGGAAAGTCGTTCGGA
GGGGTGTAGTGACTTCTTGATCGATATGGCGCGTTAATAAGCTGCCGCGT
GTCCCGTCCAGCTGGTCCGGGTGTAACGGGGCCCGTCCGTACAGCTTTTA
GGCATTACTGGAATCGTTCAGAGACGCGTGCTACGGTAGGGGTATATAGC
ACCTAAAATTTCCTTTCTGGGGCTCCTCACTTGAGGAGCTCAATGCCTCG
CCCAACAACCCACGTGAAGACACGTGCAAGCTATGCCCAATACGCAATTA
CATGGGATATAGATCCAATGAAACATATTGCATTATACGAATCGGATCGC
AACATATTGGGTGGGTTCTCAGATGACAACGATCCCCGTGAGTGATAAAT
ATTCGGGCCCCAAAATTCAACACCTTCAGTACCGTACCACGGCTCTAGAG
CCTGTTTTGCTGGACTAAATTGTATAACGTGCCACGGCGTCCGTCCCAGA
ATTGAGTATGTAAGAACACACCTTGAGGCTAATGTAGGCGTCATGGAACC
CGCTCATATTTAACGGGGTATTTATAAAAATTGAAAGACACCTCAGCTGT
GAGATAGATAAGTTCGTCGAAACTCATCTTCGCGAGCTGAGCGTGATACT
CCGATCGCGCGTACTAAAGGCTTTACAGGATCTCATGAAATATTTATTTC
AGTGGCTCGCCGGGGGGATACATAGCATCAGGGTCAACAGGGTGATTCTA
CAAAAACCAATACGGTCAACCTGTCTTATGGAATCTGACGCTGCGGGACT
CGTCGATTATGAGAGTCGCAAGACGCCTGCGATCACTGCCATCGACGGGT
CCTTCGTCGTTACGTCTGGTGTACGGCAGCGCTTGTTTTCGCGAGTTTCA
ACACGCGGGCAGTCGTTTGGGAAGCGGCAGATGACGCCCGAAAGGCGCCG
CAATGCGGTGTCGTAACGGGGTTGAGGGGGACGTTCTCGTACTGTAGCTG
TGATTCCGGCTTACCACCATCGTCTCATCGGGCAGAGTGGCGTTTAAGTT
TGCTTTGGCCGTGAGGCGTTGCGCGGGAAAACGGTATGTTGCCGGGCCAA
TGTCGGTGCGAAACGAACACCACGGGAAGGCATATTCTCGGTCCGGCAGT
TGCCGTGGTCGGCTAAATGTCCGAGCTCGATGCCTATCAAGAGTTCATCA
CCGGGAGTTATTTACATATTACTTTGTTGCATTGGGTCTCCTGCCGTGTC
ACCTAATGCCTCTCATTTCTATATCATGCAATATTTACGTCTTTCACGGT
ATACAACTTTGCCACCTGTCAACACGCTACTTTTGCAGGTGTCCTTTGAC
TTCGCGAGCTCCTAGTGGTTGCCAGATGACAGTGATGAGATCTGCAAGGT
GAGTCTGCACCCACATATACAAGCCCTACTACAGAGGGACACTACCGTGA
AACCTCTGGGTGAGCCCAGTCACTCTCACAGAAACAACCAGGGCGCTCGA
GGTATTTGTTAAACTCTCTATTACTACGTACTGGCAATATAACCCCAGAC
TGATTCCAAGTAGGTTGTCCCCCACAACATCGTGCGTTTGGAAAACTGAT
AAAGGCGTTTTTTCGCACGCATAGCGGGCACTCGTGTTTTCGGACGCCAC
ATGAACAATCATTCGGTCATTCGCCGACTCAAAAAGGCATTACATCCAGC
CACGCTGTTACGGCAATGAAACCTCACGAATATTGGGTTCACAACCATTG
TCAAATTGTGTTTGCACCAGTCGACTATTTAGTATTGATTTCCTCTCGTT
TTTCTTGTGCAGATATGAACGAAGAAGCCTGTCGATGTTTCGTCCCTTAT
CCCGCAGCTGCCCGTCCACCGCCACTGCTGCTGCTGTTTGTCGCCTCTCT
TCCTCCTTTTTGACAGCCCGTCTGTTATGTTTTGTCGCTGTCGGCCTCGC
TCGGGCAGTTCCGAATCGTACGGAAGCTCCTACTCCAGTCGTAAAGGGAC
TGGTTCTACGGTCGGGGGGGTAGCCCCATTTTCGCTACCGCGTTTACGTC
ACTCGGATGAGTGGCTCTTTATCTGACTCTGTATTTCACATGAACATTGG
ACGCACACATAGGTTGTTGTCGCAGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1378:8749..11125-

>mRNA_M-pyrifera_M_contig1378.6071.1 ID=mRNA_M-pyrifera_M_contig1378.6071.1|Name=mRNA_M-pyrifera_M_contig1378.6071.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=366bp|location=Sequence derived from alignment at M-pyrifera_M_contig1378:8749..11125- (Macrocystis pyrifera P11B4 male)
ATGACAGTGATGAGATCTGCAAGATGACAGTGATGAGATCTGCAAGCCCG
TCTGTTATGTTTTGTCGCTGTCGGCCTCGCTCGGGCAGTTCCGAATCGTA
CGGAAGCTCCTACTCCAGTCGTAAAGGGACTGGTTCTACGGTCGGGGGGG
TAGCCCCATTTTCGCTACCGCGTTTACGTCACTCGGATGAGTGGCTCTTT
ATCTGACCCGTCTGTTATGTTTTGTCGCTGTCGGCCTCGCTCGGGCAGTT
CCGAATCGTACGGAAGCTCCTACTCCAGTCGTAAAGGGACTGGTTCTACG
GTCGGGGGGGTAGCCCCATTTTCGCTACCGCGTTTACGTCACTCGGATGA
GTGGCTCTTTATCTGA
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