mRNA_M-pyrifera_M_contig13752.6059.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13752.6059.1
Unique NamemRNA_M-pyrifera_M_contig13752.6059.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig13752.6059.1 vs. uniprot
Match: D8LS86_ECTSI (PARP catalytic domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LS86_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 3.360e-46
Identity = 75/105 (71.43%), Postives = 86/105 (81.90%), Query Frame = 1
Query:    1 PCGEPTCNVCNICTHGFKLADNTGATARRKNFPLRYGDGLYFSSVSGKANDYAELSEKTNPSGKAVRCMFMADVAVANVFKTFEYRLDPDKHECPPPGYDAVLGE 315
            PCGE TC VCNICTHGF+L DN G TARR NF LRYGDGLYFSSVSGKANDYAELSEKT+ SGK VRCMF++ V V   F T+E +L P+  +CPPPG+D+V+GE
Sbjct:  344 PCGESTCKVCNICTHGFQLRDNVGDTARRTNFDLRYGDGLYFSSVSGKANDYAELSEKTDRSGKKVRCMFLSSVTVGRAFITYEGKLPPE--QCPPPGFDSVVGE 446          
BLAST of mRNA_M-pyrifera_M_contig13752.6059.1 vs. uniprot
Match: D8LS87_ECTSI (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS87_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 9.240e-40
Identity = 67/106 (63.21%), Postives = 81/106 (76.42%), Query Frame = 1
Query:    1 PCGEPTCNVCNICTHGFKLADNTGATARRKNFPLRYGDGLYFSSVSGKANDYAELSEKTNPSGKAVRCMFMADVAVANVFKTFEYRLDPDKHECPPPGYDAVLGEV 318
            PC +  C VC+ICTHGF L  N G TARR NF LRYG+GLYFSSVSGKANDYA+ SEKT+ +G+ +RCMF+A+VA    FKT E  L   ++ECPP GYD+V+GEV
Sbjct:  324 PCSDKGCKVCSICTHGFTLQGNVGGTARRTNFGLRYGEGLYFSSVSGKANDYADFSEKTDSNGRRLRCMFVANVAAGKAFKTHETSLQ--QNECPPAGYDSVVGEV 427          
BLAST of mRNA_M-pyrifera_M_contig13752.6059.1 vs. uniprot
Match: D8LKU8_ECTSI (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKU8_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 2.990e-38
Identity = 64/106 (60.38%), Postives = 74/106 (69.81%), Query Frame = 1
Query:    1 PCGEPTCNVCNICTHGFKLADNTGATARRKNFPLRYGDGLYFSSVSGKANDYAELSEKTNPSGKAVRCMFMADVAVANVFKTFEYRLDPDKHECPPPGYDAVLGEV 318
            PC    CNVCNICTHGF L DN   TARR N+  RYG+GLYFSSVSGK+NDYA+ SEK    GK VRCMF+A+V   N + T +  L  D   CPP GYD+V+GEV
Sbjct:  102 PCSSKACNVCNICTHGFVLRDNVRGTARRANYRRRYGEGLYFSSVSGKSNDYAQQSEKVGSDGKKVRCMFVANVTAGNAYLTQQGSLGQDM--CPPAGYDSVVGEV 205          
BLAST of mRNA_M-pyrifera_M_contig13752.6059.1 vs. uniprot
Match: D7FXR1_ECTSI (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXR1_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 1.330e-33
Identity = 59/106 (55.66%), Postives = 73/106 (68.87%), Query Frame = 1
Query:    1 PCGEPTCNVCNICTHGFKLADNTGATARRKNFPLRYGDGLYFSSVSGKANDYAELSEKTNPSGKAVRCMFMADVAVANVFKTFEYRLDPDKHECPPPGYDAVLGEV 318
            PCG+ +C+VCNIC  GFKL  N   TAR   FPLRYG+G+Y +SVSGKANDYA  S K   +   +RCMF+A+VAV   FKT    L  +  +CPPPGY +V+GEV
Sbjct:   99 PCGKSSCSVCNICKLGFKLGANVAGTARATGFPLRYGEGVYLTSVSGKANDYASRSAKKIGNDSELRCMFVANVAVGRTFKTKSTSLPAN--QCPPPGYQSVVGEV 202          
BLAST of mRNA_M-pyrifera_M_contig13752.6059.1 vs. uniprot
Match: D8LKU6_ECTSI (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKU6_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 1.370e-33
Identity = 59/106 (55.66%), Postives = 74/106 (69.81%), Query Frame = 1
Query:    1 PCGEPTCNVCNICTHGFKLADNTGATARRKNFPLRYGDGLYFSSVSGKANDYAELSEKTNPSGKAVRCMFMADVAVANVFKTFEYRLDPDKHECPPPGYDAVLGEV 318
            PC    CNVCNICT+GF L  N G TA+R +  LRYG+GLYFSSVSGK+NDYA+ SEK    GK VRCMF+A+V   N + T +  L   ++ CPP G+D+V+GE 
Sbjct:  164 PCSSRGCNVCNICTNGFMLQGNVGGTAKRTSIGLRYGEGLYFSSVSGKSNDYAQGSEKVGSDGKKVRCMFIANVTAGNAYLTQQVSLG--QNMCPPAGHDSVVGEA 267          
BLAST of mRNA_M-pyrifera_M_contig13752.6059.1 vs. uniprot
Match: D8LS88_ECTSI (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS88_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 1.510e-33
Identity = 61/106 (57.55%), Postives = 76/106 (71.70%), Query Frame = 1
Query:    1 PCGEPTCNVCNICTHGFKLADNTGATARRKNFPLRYGDGLYFSSVSGKANDYAELSEKTNPSGKAVRCMFMADVAVANVFKTFEYRLDPDKHECPPPGYDAVLGEV 318
            PCG  +C++CNI   GFKL +N G TA  +NF LRYG G+YFSSVSGKANDYA+L+ KT   G  +RCMF+A+VA    + T E  LD  K  CPPPGY++V+GEV
Sbjct:  318 PCGLRSCSLCNISMRGFKLDENVGRTALARNFNLRYGKGVYFSSVSGKANDYADLTAKTAKDGTKLRCMFVANVAAGKAYSTKEKALDDGK--CPPPGYESVVGEV 421          
BLAST of mRNA_M-pyrifera_M_contig13752.6059.1 vs. uniprot
Match: A0A6H5JBF5_9PHAE (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBF5_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 3.850e-33
Identity = 59/106 (55.66%), Postives = 71/106 (66.98%), Query Frame = 1
Query:    1 PCGEPTCNVCNICTHGFKLADNTGATARRKNFPLRYGDGLYFSSVSGKANDYAELSEKTNPSGKAVRCMFMADVAVANVFKTFEYRLDPDKHECPPPGYDAVLGEV 318
            PCG+ +C+VCNIC  GFKL  N   TAR    PLRYG+G+Y +SVSGKANDYA  S K       +RCMF+A VAV   FKT   RL  +  +CPPPGY +V+GEV
Sbjct:  100 PCGKSSCSVCNICKLGFKLGANVAGTARATGVPLRYGEGIYLTSVSGKANDYASRSAKKIGIASELRCMFVASVAVGRAFKTKSTRLPAN--QCPPPGYQSVVGEV 203          
BLAST of mRNA_M-pyrifera_M_contig13752.6059.1 vs. uniprot
Match: A0A6H5JYU8_9PHAE (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYU8_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 4.010e-32
Identity = 60/104 (57.69%), Postives = 74/104 (71.15%), Query Frame = 1
Query:    1 PCGEPTCNVCNICTHGFKLADNTGATARRKNFPLRYGDGLYFSSVSGKANDYAELSEKTNPSGKAVRCMFMADVAVANVFKTFEYRLDPDKHECPPPGYDAVLG 312
            PCG  +C+VC+IC  GFK+ DN G TARR  F LRYG+G+YFSSVSGKANDYA  S+KT P G+ +RCMF+A VA  N + T E  L  +K  CPP G ++V G
Sbjct:  398 PCGLSSCSVCSICMQGFKIKDNVGTTARRTGFSLRYGEGVYFSSVSGKANDYARFSQKTAPDGRRLRCMFVAYVAKGNPYLTKEASLPRNK--CPPSGLESVEG 499          
BLAST of mRNA_M-pyrifera_M_contig13752.6059.1 vs. uniprot
Match: D7FXR2_ECTSI (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXR2_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 4.600e-31
Identity = 60/106 (56.60%), Postives = 71/106 (66.98%), Query Frame = 1
Query:    1 PCGEPTCNVCNICTHGFKLADNTGATARRKNFPLRYGDGLYFSSVSGKANDYAELSEKTNPSGKAVRCMFMADVAVANVFKTFEYRLDPDKHECPPPGYDAVLGEV 318
            PCGE +C+VCNIC  GF+L  N   TAR   FPLRYG G+Y +SVSGKANDYA  S K       +RCMF+A VA+ N FKT   RL  D  +CPPPGY +V+GE 
Sbjct:  297 PCGESSCSVCNICKLGFQLGPNVARTARATRFPLRYGAGIYLTSVSGKANDYASRSAK-KVGELELRCMFVASVALGNTFKTTSARLPAD--QCPPPGYHSVVGEA 399          
BLAST of mRNA_M-pyrifera_M_contig13752.6059.1 vs. uniprot
Match: D8LKU5_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKU5_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 1.760e-30
Identity = 60/106 (56.60%), Postives = 70/106 (66.04%), Query Frame = 1
Query:    1 PCGEPTCNVCNICTHGFKLADNTGATARRKNFPLRYGDGLYFSSVSGKANDYAELSEKTNPSGKAVRCMFMADVAVANVFKTFEYRLDPDKHECPPPGYDAVLGEV 318
            PCG  +C+VCNIC  GFKL  N   TAR    PLRYG G+YFSSVSGKANDYA LS KT   G  +RCMF+A+VA    F T +  L   + ECPP G  +V+GEV
Sbjct:  546 PCGLSSCSVCNICMLGFKLGKNVARTARASGIPLRYGTGIYFSSVSGKANDYARLSAKTGSDGAELRCMFVANVAGGKAFSTKKSHLP--QSECPPSGCQSVVGEV 649          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13752.6059.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LS86_ECTSI3.360e-4671.43PARP catalytic domain-containing protein n=2 Tax=E... [more]
D8LS87_ECTSI9.240e-4063.21PARP catalytic domain-containing protein n=1 Tax=E... [more]
D8LKU8_ECTSI2.990e-3860.38PARP catalytic domain-containing protein n=1 Tax=E... [more]
D7FXR1_ECTSI1.330e-3355.66PARP catalytic domain-containing protein n=1 Tax=E... [more]
D8LKU6_ECTSI1.370e-3355.66PARP catalytic domain-containing protein n=1 Tax=E... [more]
D8LS88_ECTSI1.510e-3357.55PARP catalytic domain-containing protein n=1 Tax=E... [more]
A0A6H5JBF5_9PHAE3.850e-3355.66PARP catalytic domain-containing protein n=1 Tax=E... [more]
A0A6H5JYU8_9PHAE4.010e-3257.69PARP catalytic domain-containing protein n=1 Tax=E... [more]
D7FXR2_ECTSI4.600e-3156.60PARP catalytic domain-containing protein n=1 Tax=E... [more]
D8LKU5_ECTSI1.760e-3056.60TPR repeat-containing protein n=1 Tax=Ectocarpus s... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13752contigM-pyrifera_M_contig13752:7442..8119 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score147.9
Seed ortholog evalue2.7e-33
Seed eggNOG ortholog2880.D8LS87
Hectar predicted targeting categoryother localisation
EggNOG OGs28J37@1,2S14A@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size318
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815825.2510662-CDS-M-pyrifera_M_contig13752:7441..75851622815825.2510662-CDS-M-pyrifera_M_contig13752:7441..7585Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13752 7442..7585 -
1692277590.7276967-CDS-M-pyrifera_M_contig13752:7441..75851692277590.7276967-CDS-M-pyrifera_M_contig13752:7441..7585Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13752 7442..7585 -
1622815825.2620478-CDS-M-pyrifera_M_contig13752:7945..81191622815825.2620478-CDS-M-pyrifera_M_contig13752:7945..8119Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13752 7946..8119 -
1692277590.7396464-CDS-M-pyrifera_M_contig13752:7945..81191692277590.7396464-CDS-M-pyrifera_M_contig13752:7945..8119Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13752 7946..8119 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13752.6059.1prot_M-pyrifera_M_contig13752.6059.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13752 7442..8119 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13752.6059.1

>prot_M-pyrifera_M_contig13752.6059.1 ID=prot_M-pyrifera_M_contig13752.6059.1|Name=mRNA_M-pyrifera_M_contig13752.6059.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=106bp
PCGEPTCNVCNICTHGFKLADNTGATARRKNFPLRYGDGLYFSSVSGKAN
DYAELSEKTNPSGKAVRCMFMADVAVANVFKTFEYRLDPDKHECPPPGYD
AVLGEV
back to top

mRNA from alignment at M-pyrifera_M_contig13752:7442..8119-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13752.6059.1 ID=mRNA_M-pyrifera_M_contig13752.6059.1|Name=mRNA_M-pyrifera_M_contig13752.6059.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=678bp|location=Sequence derived from alignment at M-pyrifera_M_contig13752:7442..8119- (Macrocystis pyrifera P11B4 male)
CCTTGCGGAGAGCCGACCTGCAACGTGTGCAACATATGCACGCATGGTTT CAAGTTGGCTGACAATACGGGCGCGACGGCGAGGAGAAAGAATTTTCCCT TGCGCTACGGTGACGGCCTGTACTTCAGCAGCGTCTCGGGAAAGGCCAAC GACTACGCTGAGCTGTCCGAGAAGGTGCTGCTCCCTTTTGTTTTTCTTGG CACCCGCTTTTTAGGCCATGCGGCAAAAAAAGCGGTTGGCCCATGGGAGA CAAAGACGGCACGTTGATGAGGCGGCGTTCCCCCGTATAGTCGATTACTA TGGCAAGACCCTCTGCAAAAAGTACTCTCAACATAGTCGCCTGCCACGGC AAGACGTGCTGAAAAGAATTATACCTGGTAGCAGCACTTAAGTCTGCGGT TTTTGTTGCTTGCCACTTTGGTTGAAGCCAAAGTGGGCCTCCCCCCGCCA CGCCGATCTAACCCGTCCCGTTTTTTCGCCCGCATCGTCGCTGCGCGTAC TGCCCACGGTGGGCGTGGTAATATTTTTCCGCAGACGAACCCCTCAGGAA AGGCGGTGAGGTGTATGTTCATGGCCGACGTTGCGGTGGCCAATGTGTTC AAGACGTTCGAATACCGGCTCGATCCGGACAAACACGAATGCCCCCCGCC AGGTTATGATGCCGTCCTGGGAGAGGTG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig13752:7442..8119-

>mRNA_M-pyrifera_M_contig13752.6059.1 ID=mRNA_M-pyrifera_M_contig13752.6059.1|Name=mRNA_M-pyrifera_M_contig13752.6059.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig13752:7442..8119- (Macrocystis pyrifera P11B4 male)
CCTTGCGGAGAGCCGACCTGCAACGTGTGCAACATATGCACGCATGGTTT
CAAGTTGGCTGACAATACGGGCGCGACGGCGAGGAGAAAGAATTTTCCCT
TGCGCTACGGTGACGGCCTGTACTTCAGCAGCGTCTCGGGAAAGGCCAAC
GACTACGCTGAGCTGTCCGAGAAGCCTTGCGGAGAGCCGACCTGCAACGT
GTGCAACATATGCACGCATGGTTTCAAGTTGGCTGACAATACGGGCGCGA
CGGCGAGGAGAAAGAATTTTCCCTTGCGCTACGGTGACGGCCTGTACTTC
AGCAGCGTCTCGGGAAAGGCCAACGACTACGCTGAGCTGTCCGAGAAGAC
GAACCCCTCAGGAAAGGCGGTGAGGTGTATGTTCATGGCCGACGTTGCGG
TGGCCAATGTGTTCAAGACGTTCGAATACCGGCTCGATCCGGACAAACAC
GAATGCCCCCCGCCAGGTTATGATGCCGTCCTGGGAGAGGTGACGAACCC
CTCAGGAAAGGCGGTGAGGTGTATGTTCATGGCCGACGTTGCGGTGGCCA
ATGTGTTCAAGACGTTCGAATACCGGCTCGATCCGGACAAACACGAATGC
CCCCCGCCAGGTTATGATGCCGTCCTGGGAGAGGTG
back to top