mRNA_M-pyrifera_M_contig1374.6055.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1374.6055.1
Unique NamemRNA_M-pyrifera_M_contig1374.6055.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1374.6055.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1374contigM-pyrifera_M_contig1374:25784..26250 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size467
Cds size333
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815824.9830854-CDS-M-pyrifera_M_contig1374:25783..261161622815824.9830854-CDS-M-pyrifera_M_contig1374:25783..26116Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1374 25784..26116 +
1692277590.5592458-CDS-M-pyrifera_M_contig1374:25783..261161692277590.5592458-CDS-M-pyrifera_M_contig1374:25783..26116Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1374 25784..26116 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815824.9941943-UTR-M-pyrifera_M_contig1374:26116..262501622815824.9941943-UTR-M-pyrifera_M_contig1374:26116..26250Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1374 26117..26250 +
1692277590.568939-UTR-M-pyrifera_M_contig1374:26116..262501692277590.568939-UTR-M-pyrifera_M_contig1374:26116..26250Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1374 26117..26250 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1374.6055.1prot_M-pyrifera_M_contig1374.6055.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1374 25784..26116 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1374.6055.1

>prot_M-pyrifera_M_contig1374.6055.1 ID=prot_M-pyrifera_M_contig1374.6055.1|Name=mRNA_M-pyrifera_M_contig1374.6055.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=111bp
MNNPESLLAWLFILLLLSGSSLPRRRTPREKGELLFFSPVPSYTGGPAGR
HFTPCSLVVHYLHACFFGGSIASVTDPRSYAFSRSNHQPQDGLGRNKILL
TIMRTWHLLR*
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mRNA from alignment at M-pyrifera_M_contig1374:25784..26250+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1374.6055.1 ID=mRNA_M-pyrifera_M_contig1374.6055.1|Name=mRNA_M-pyrifera_M_contig1374.6055.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=467bp|location=Sequence derived from alignment at M-pyrifera_M_contig1374:25784..26250+ (Macrocystis pyrifera P11B4 male)
ATGAATAATCCTGAATCACTCCTTGCTTGGTTGTTCATACTATTGCTTCT
TTCTGGTTCCTCCCTTCCCCGACGACGCACGCCGCGAGAAAAGGGTGAAC
TCCTTTTTTTTTCACCTGTACCATCATACACCGGAGGCCCAGCAGGCCGA
CATTTCACGCCCTGCTCACTAGTCGTACACTACCTACATGCTTGTTTTTT
CGGGGGATCCATCGCATCCGTAACCGACCCTCGTTCTTATGCTTTCTCGC
GCTCGAACCACCAACCCCAGGACGGTCTGGGCAGAAACAAAATCCTTCTT
ACAATAATGCGCACATGGCACCTGCTCAGATAGATCTCAAACTGCCGTTC
TGAAAATCTTTCCGCCGATGTGTGCAGCGCTAACACGATGCTGTTGACGT
GTCACAACCAACACCTTACTATCTGAATTGCTTAGCTATATATTGCACAA
GAAGAAGAGGAGAGAGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1374:25784..26250+

>mRNA_M-pyrifera_M_contig1374.6055.1 ID=mRNA_M-pyrifera_M_contig1374.6055.1|Name=mRNA_M-pyrifera_M_contig1374.6055.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=666bp|location=Sequence derived from alignment at M-pyrifera_M_contig1374:25784..26250+ (Macrocystis pyrifera P11B4 male)
ATGAATAATCCTGAATCACTCCTTGCTTGGTTGTTCATACTATTGCTTCT
TTCTGGTTCCTCCCTTCCCCGACGACGCACGCCGCGAGAAAAGGGTGAAC
TCCTTTTTTTTTCACCTGTACCATCATACACCGGAGGCCCAGCAGGCCGA
CATTTCACGCCCTGCTCACTAGTCGTACACTACCTACATGCTTGTTTTTT
CGGGGGATCCATCGCATCCGTAACCGACCCTCGTTCTTATGCTTTCTCGC
GCTCGAACCACCAACCCCAGGACGGTCTGGGCAGAAACAAAATCCTTCTT
ACAATAATGCGCACATGGCACCTGCTCAGATAGATGAATAATCCTGAATC
ACTCCTTGCTTGGTTGTTCATACTATTGCTTCTTTCTGGTTCCTCCCTTC
CCCGACGACGCACGCCGCGAGAAAAGGGTGAACTCCTTTTTTTTTCACCT
GTACCATCATACACCGGAGGCCCAGCAGGCCGACATTTCACGCCCTGCTC
ACTAGTCGTACACTACCTACATGCTTGTTTTTTCGGGGGATCCATCGCAT
CCGTAACCGACCCTCGTTCTTATGCTTTCTCGCGCTCGAACCACCAACCC
CAGGACGGTCTGGGCAGAAACAAAATCCTTCTTACAATAATGCGCACATG
GCACCTGCTCAGATAG
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