mRNA_M-pyrifera_M_contig13738.6053.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13738.6053.1
Unique NamemRNA_M-pyrifera_M_contig13738.6053.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13738.6053.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13738contigM-pyrifera_M_contig13738:2348..4391 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size396
Cds size393
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815824.9290078-CDS-M-pyrifera_M_contig13738:2349..25141622815824.9290078-CDS-M-pyrifera_M_contig13738:2349..2514Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13738 2350..2514 -
1692277590.5400226-CDS-M-pyrifera_M_contig13738:2349..25141692277590.5400226-CDS-M-pyrifera_M_contig13738:2349..2514Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13738 2350..2514 -
1622815824.9422133-CDS-M-pyrifera_M_contig13738:4163..43911622815824.9422133-CDS-M-pyrifera_M_contig13738:4163..4391Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13738 4164..4391 -
1692277590.549848-CDS-M-pyrifera_M_contig13738:4163..43911692277590.549848-CDS-M-pyrifera_M_contig13738:4163..4391Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13738 4164..4391 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13738.6053.1prot_M-pyrifera_M_contig13738.6053.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13738 2350..4391 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13738.6053.1

>prot_M-pyrifera_M_contig13738.6053.1 ID=prot_M-pyrifera_M_contig13738.6053.1|Name=mRNA_M-pyrifera_M_contig13738.6053.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=131bp
VDYANGALSGSTPAGGCRAPERVGAQPFREQASPRQLAIEATDSGSKVSR
WGAFASNGGGVDSVKKRRGQAEFGQEMKGDPFFVASLPETAAPSTPRRSG
PTTGQGRKRALASTSASISRGGTRYNKSGRR
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mRNA from alignment at M-pyrifera_M_contig13738:2348..4391-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13738.6053.1 ID=mRNA_M-pyrifera_M_contig13738.6053.1|Name=mRNA_M-pyrifera_M_contig13738.6053.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2044bp|location=Sequence derived from alignment at M-pyrifera_M_contig13738:2348..4391- (Macrocystis pyrifera P11B4 male)
GTCGACTATGCCAATGGCGCCCTGTCAGGATCGACGCCTGCCGGGGGTTG
CCGTGCACCTGAGCGTGTTGGTGCTCAACCCTTTCGCGAACAGGCTTCGC
CGCGGCAGTTGGCTATTGAAGCAACCGATTCTGGGAGCAAGGTCAGCCGG
TGGGGGGCGTTTGCCTCCAACGGGGGGGGTGTGGATAGCGTTAAGAAACG
CCGTGGGCAAGCGGAGTTCGGCCAAGAGGTAAACGCGCGCATTGCTTGGT
GTTCGTCTTTCCAGAGGTTTAGTGAAAGACACTAGGTATGTTGCGCAGAG
TTACTACGTACTGTTTCCATTTTAATAGCGTAGTATTAATAGTACACCTC
AAGAGAAACCTCAGCACTATAAAAAGAACGAAGTTTTCTATGAACAATCT
CGCCACAGAAACGAGGTCGCGAAGAGATCGGAGTCCTCATCCTTGACTCT
TAACTCAAGACTATCCGTACAACGTTCTACGGTAGGAGTTATACGGTGGT
TACAGGCGGCGAAACAGGAAGAGGATTAGATTAGCTAAAAGTTTCCATGT
AATATTTTATATAGAAACATCTTAATTAGCGCCCAATTGCTGTTGGAGGT
GTCCGTGTTGGAGTAGAAGGTGCTCCGTCCCGAAAGGGATGCGTGGTCAA
TGGATGGTCAAATGCCTAAGGCAAGCAACAAGTGACTACCCCCCCCCCCC
CCTCCCCTCGCCGGAGGGGTTAAAATGGGATATATACTTGGTACCAGGTA
TCTTTTTTCGAGTCCTTCTCTCGAGGTCTTGCCTCTTCAAATTCATGTTA
ATTTTGTTGGTCCATCCTTATTCGCCTATTAAGAAACCGTTTCCAAACCA
GCCCGTTCGTAAATTTCTAGCTGCCTGGATGGACTTGTGACTTGGGGAAA
TTTCTGTCATCTGGTTAAAGTTTCATTGTGGGCGGTTAGTTGAATACCCT
TTAGTTAACGTGGTTGAAGCGTGCTCTTAAGCCTACTGTAATACGTCGGC
GGCTACGAAGTGCCATGTTCGTTCTGTCACTCTGTCCCTAAATTAAGGAA
CGTTTGTGTTGAATATTAGTATAGGAATGCATCCTATATTTCGCGACAAG
AGTGGTATAATATAATGGTGCGATACGAGTACAAGTTCAATAATCAGGGC
TGTGAGTTGGTTGACTACAAGTCGCCGACAAGGTATTAGTTGGCTGTGTA
GGTTTCATGATTACAGTAGAAGGCTGTGAGTCGGCTGACTGGTTGCTATT
TGGCTATAGTAGGTAAGTTCCATGATTCAGTATTTAGTGCTGTGAGTTGA
CTATTAGTCGCCGACTCGTTTTTTGTCGGCTAGGTAGGTCCCACGATTAG
TACGTATTGGTATGACTTGACTGACTTATAATTAGCCCACTAGTTGTCAG
TTGGCATGGTAGGTTCCATGGTTACTACATGGGGCTTTTGTTTGGCTGAC
TATAAGTCGCCGAGTAGTTGTTAGTTGGTTACATGTTCCAGTCATTCATC
TGGCGTGTTTGTGGCTCGGATTGTCCTCTTTAGTAAGGTGGCTTACTTCG
CCACACCTAACAACTAGCCGTCAAGTACAGCATACTCGCAGCCTCAGCAA
TATATCTGATGTACTACTTGTAGTACAGGCAGTAGTTGCTTCGCCACCTC
TGGAGTGCCACCACTTGGATTATCGTTGATGCCCCTTCCACCTCCCTTCG
TGTTGTACGACCCCATTTGAAACCTCTGTCCGGAAATGTAAGGATTTTCC
ATGTGAATACACTAGCGGTCCTTGCAATTCCGGACAGACTGGCACCGGGT
GGCATCTAACAAGCGCTGATCTCGAGTTTCTATTTCCCCGTGTTTGTGAT
ATATACCTGGTACGCGATTGTTCCCAGATGAAAGGAGACCCATTTTTTGT
TGCCAGTCTGCCCGAGACCGCCGCACCATCTACGCCACGGCGAAGCGGTC
CTACTACTGGACAAGGTAGAAAACGCGCTTTGGCGAGCACGTCGGCCTCT
ATTAGTAGGGGAGGGACGCGATATAACAAGTCGGGGCGCCGTCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13738:2348..4391-

>mRNA_M-pyrifera_M_contig13738.6053.1 ID=mRNA_M-pyrifera_M_contig13738.6053.1|Name=mRNA_M-pyrifera_M_contig13738.6053.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=786bp|location=Sequence derived from alignment at M-pyrifera_M_contig13738:2348..4391- (Macrocystis pyrifera P11B4 male)
GTCGACTATGCCAATGGCGCCCTGTCAGGATCGACGCCTGCCGGGGGTTG
CCGTGCACCTGAGCGTGTTGGTGCTCAACCCTTTCGCGAACAGGCTTCGC
CGCGGCAGTTGGCTATTGAAGCAACCGATTCTGGGAGCAAGGTCAGCCGG
TGGGGGGCGTTTGCCTCCAACGGGGGGGGTGTGGATAGCGTTAAGAAACG
CCGTGGGCAAGCGGAGTTCGGCCAAGAGGTCGACTATGCCAATGGCGCCC
TGTCAGGATCGACGCCTGCCGGGGGTTGCCGTGCACCTGAGCGTGTTGGT
GCTCAACCCTTTCGCGAACAGGCTTCGCCGCGGCAGTTGGCTATTGAAGC
AACCGATTCTGGGAGCAAGGTCAGCCGGTGGGGGGCGTTTGCCTCCAACG
GGGGGGGTGTGGATAGCGTTAAGAAACGCCGTGGGCAAGCGGAGTTCGGC
CAAGAGATGAAAGGAGACCCATTTTTTGTTGCCAGTCTGCCCGAGACCGC
CGCACCATCTACGCCACGGCGAAGCGGTCCTACTACTGGACAAGGTAGAA
AACGCGCTTTGGCGAGCACGTCGGCCTCTATTAGTAGGGGAGGGACGCGA
TATAACAAGTCGGGGCGCCGTATGAAAGGAGACCCATTTTTTGTTGCCAG
TCTGCCCGAGACCGCCGCACCATCTACGCCACGGCGAAGCGGTCCTACTA
CTGGACAAGGTAGAAAACGCGCTTTGGCGAGCACGTCGGCCTCTATTAGT
AGGGGAGGGACGCGATATAACAAGTCGGGGCGCCGT
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