mRNA_M-pyrifera_M_contig13730.6049.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13730.6049.1
Unique NamemRNA_M-pyrifera_M_contig13730.6049.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13730.6049.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13730contigM-pyrifera_M_contig13730:4661..5258 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size598
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13730.6049.1prot_M-pyrifera_M_contig13730.6049.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13730 4734..5084 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815824.5053174-UTR-M-pyrifera_M_contig13730:4660..47331622815824.5053174-UTR-M-pyrifera_M_contig13730:4660..4733Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13730 4661..4733 +
1692277590.2749832-UTR-M-pyrifera_M_contig13730:4660..47331692277590.2749832-UTR-M-pyrifera_M_contig13730:4660..4733Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13730 4661..4733 +
1622815824.5310998-UTR-M-pyrifera_M_contig13730:5084..52581622815824.5310998-UTR-M-pyrifera_M_contig13730:5084..5258Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13730 5085..5258 +
1692277590.290855-UTR-M-pyrifera_M_contig13730:5084..52581692277590.290855-UTR-M-pyrifera_M_contig13730:5084..5258Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13730 5085..5258 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815824.5212417-CDS-M-pyrifera_M_contig13730:4733..50841622815824.5212417-CDS-M-pyrifera_M_contig13730:4733..5084Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13730 4734..5084 +
1692277590.2832284-CDS-M-pyrifera_M_contig13730:4733..50841692277590.2832284-CDS-M-pyrifera_M_contig13730:4733..5084Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13730 4734..5084 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13730.6049.1

>prot_M-pyrifera_M_contig13730.6049.1 ID=prot_M-pyrifera_M_contig13730.6049.1|Name=mRNA_M-pyrifera_M_contig13730.6049.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=117bp
MRRFALLERFVLLVRRASAFTTRCSRCCALLACLLMALRTLLVWNIGGGF
RRSCKSRLLSGCSGLGDDAFRVSSFRRCVTTPLNTRCSTARPILDGFASN
QAPRANPSGLLLQTPG*
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mRNA from alignment at M-pyrifera_M_contig13730:4661..5258+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13730.6049.1 ID=mRNA_M-pyrifera_M_contig13730.6049.1|Name=mRNA_M-pyrifera_M_contig13730.6049.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=598bp|location=Sequence derived from alignment at M-pyrifera_M_contig13730:4661..5258+ (Macrocystis pyrifera P11B4 male)
CTGGCATTTGACGTGGTGATGACGATGCCCCCGTAGGCTTGCGCTACGTA
AGGCTGGCGTTTGATGAAGATGGATGAGGCGTTTTGCGCTCTTGGAGCGG
TTCGTACTCCTCGTGAGAAGGGCGAGTGCTTTTACTACCCGCTGCAGCAG
GTGTTGCGCTTTGCTCGCTTGCTTGCTGATGGCTTTGCGCACTTTACTCG
TGTGGAATATAGGCGGAGGATTTCGCCGCTCGTGCAAAAGCAGGTTGCTA
TCTGGTTGTTCAGGGCTGGGCGACGATGCCTTCAGGGTTTCGAGTTTTCG
CCGTTGTGTGACTACCCCGCTGAACACGCGCTGCAGCACGGCGCGGCCGA
TTCTAGACGGCTTTGCTTCGAATCAAGCTCCACGAGCTAATCCGTCCGGT
CTTCTTCTGCAGACGCCAGGTTGATCGAAATCTTGCACTCAACTCCACTG
CACCGCGCCAGACTGCGCTGCACTGCTCCACCGCGCCGTCTCGTTTTTGT
GTATCATTGAACGGTGGTGTAATGGTAGGACTCCCGTGTAGTTATGTGAT
GTTGTGATGTGTCAAGTTGAAGGTGTTTGCTCTCGCAGCTTTTATGCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13730:4661..5258+

>mRNA_M-pyrifera_M_contig13730.6049.1 ID=mRNA_M-pyrifera_M_contig13730.6049.1|Name=mRNA_M-pyrifera_M_contig13730.6049.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=702bp|location=Sequence derived from alignment at M-pyrifera_M_contig13730:4661..5258+ (Macrocystis pyrifera P11B4 male)
ATGAGGCGTTTTGCGCTCTTGGAGCGGTTCGTACTCCTCGTGAGAAGGGC
GAGTGCTTTTACTACCCGCTGCAGCAGGTGTTGCGCTTTGCTCGCTTGCT
TGCTGATGGCTTTGCGCACTTTACTCGTGTGGAATATAGGCGGAGGATTT
CGCCGCTCGTGCAAAAGCAGGTTGCTATCTGGTTGTTCAGGGCTGGGCGA
CGATGCCTTCAGGGTTTCGAGTTTTCGCCGTTGTGTGACTACCCCGCTGA
ACACGCGCTGCAGCACGGCGCGGCCGATTCTAGACGGCTTTGCTTCGAAT
CAAGCTCCACGAGCTAATCCGTCCGGTCTTCTTCTGCAGACGCCAGGTTG
AATGAGGCGTTTTGCGCTCTTGGAGCGGTTCGTACTCCTCGTGAGAAGGG
CGAGTGCTTTTACTACCCGCTGCAGCAGGTGTTGCGCTTTGCTCGCTTGC
TTGCTGATGGCTTTGCGCACTTTACTCGTGTGGAATATAGGCGGAGGATT
TCGCCGCTCGTGCAAAAGCAGGTTGCTATCTGGTTGTTCAGGGCTGGGCG
ACGATGCCTTCAGGGTTTCGAGTTTTCGCCGTTGTGTGACTACCCCGCTG
AACACGCGCTGCAGCACGGCGCGGCCGATTCTAGACGGCTTTGCTTCGAA
TCAAGCTCCACGAGCTAATCCGTCCGGTCTTCTTCTGCAGACGCCAGGTT
GA
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