mRNA_M-pyrifera_M_contig1373.6046.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1373.6046.1
Unique NamemRNA_M-pyrifera_M_contig1373.6046.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1373.6046.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1373contigM-pyrifera_M_contig1373:18566..19209 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size644
Cds size357
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1373.6046.1prot_M-pyrifera_M_contig1373.6046.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1373 18603..18959 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815824.2948806-UTR-M-pyrifera_M_contig1373:18565..186021622815824.2948806-UTR-M-pyrifera_M_contig1373:18565..18602Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1373 18566..18602 +
1692277590.1599-UTR-M-pyrifera_M_contig1373:18565..186021692277590.1599-UTR-M-pyrifera_M_contig1373:18565..18602Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1373 18566..18602 +
1622815824.3166218-UTR-M-pyrifera_M_contig1373:18959..192091622815824.3166218-UTR-M-pyrifera_M_contig1373:18959..19209Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1373 18960..19209 +
1692277590.182351-UTR-M-pyrifera_M_contig1373:18959..192091692277590.182351-UTR-M-pyrifera_M_contig1373:18959..19209Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig1373 18960..19209 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815824.305603-CDS-M-pyrifera_M_contig1373:18602..189591622815824.305603-CDS-M-pyrifera_M_contig1373:18602..18959Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1373 18603..18959 +
1692277590.1736553-CDS-M-pyrifera_M_contig1373:18602..189591692277590.1736553-CDS-M-pyrifera_M_contig1373:18602..18959Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1373 18603..18959 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1373.6046.1

>prot_M-pyrifera_M_contig1373.6046.1 ID=prot_M-pyrifera_M_contig1373.6046.1|Name=mRNA_M-pyrifera_M_contig1373.6046.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=119bp
MTRVFEAPKASGWNQVGPSRRLPPQVSVITRAPCDNVVGRHEDMLPSSPW
PSKHAVSSPRFRAPHLFKWCTIPGISCKISRTVYQREMAILIVIVIVPAV
KGASSPALFPDQSATNSA*
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mRNA from alignment at M-pyrifera_M_contig1373:18566..19209+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1373.6046.1 ID=mRNA_M-pyrifera_M_contig1373.6046.1|Name=mRNA_M-pyrifera_M_contig1373.6046.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=644bp|location=Sequence derived from alignment at M-pyrifera_M_contig1373:18566..19209+ (Macrocystis pyrifera P11B4 male)
GCCAGCCGTAGATTGTTCATACCAGGGTATATGCTTAATGACGCGCGTGT
TCGAAGCTCCTAAAGCCAGTGGCTGGAATCAAGTCGGCCCTTCGCGTCGT
CTTCCGCCTCAAGTGTCTGTTATCACACGAGCTCCTTGCGACAATGTAGT
CGGTCGTCATGAAGATATGCTACCATCTAGTCCGTGGCCATCAAAACATG
CTGTGAGTAGCCCTAGGTTCCGTGCACCTCACCTGTTCAAATGGTGCACT
ATACCGGGCATCAGCTGCAAGATATCGCGTACGGTATACCAGAGAGAAAT
GGCAATACTAATAGTAATAGTAATCGTTCCTGCCGTAAAAGGTGCATCCA
GCCCTGCGCTATTTCCTGACCAATCAGCAACGAATTCTGCGTAAAAAGAG
CTACCCGTAGCCCCAGCCGACCGAAGCCGTACATCAAACATTCAAGCATC
AGCATCGAGGCTATCACCTCTCGTCCCGAAATTAGTGCCACGCATGATGC
ACTATGCATCAAGCGTCATCCGTCAGCGTCAGGCAAGCATCAAGGCCAAC
CGTGGGTCAAGTGTGCTGTCTCGTTCAACCGCGGAACGCCTCTGACAGTG
GTCAAGCCCAACAACAAAAAAGGCCGCGGATGACAACATTATAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1373:18566..19209+

>mRNA_M-pyrifera_M_contig1373.6046.1 ID=mRNA_M-pyrifera_M_contig1373.6046.1|Name=mRNA_M-pyrifera_M_contig1373.6046.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=714bp|location=Sequence derived from alignment at M-pyrifera_M_contig1373:18566..19209+ (Macrocystis pyrifera P11B4 male)
ATGACGCGCGTGTTCGAAGCTCCTAAAGCCAGTGGCTGGAATCAAGTCGG
CCCTTCGCGTCGTCTTCCGCCTCAAGTGTCTGTTATCACACGAGCTCCTT
GCGACAATGTAGTCGGTCGTCATGAAGATATGCTACCATCTAGTCCGTGG
CCATCAAAACATGCTGTGAGTAGCCCTAGGTTCCGTGCACCTCACCTGTT
CAAATGGTGCACTATACCGGGCATCAGCTGCAAGATATCGCGTACGGTAT
ACCAGAGAGAAATGGCAATACTAATAGTAATAGTAATCGTTCCTGCCGTA
AAAGGTGCATCCAGCCCTGCGCTATTTCCTGACCAATCAGCAACGAATTC
TGCGTAAATGACGCGCGTGTTCGAAGCTCCTAAAGCCAGTGGCTGGAATC
AAGTCGGCCCTTCGCGTCGTCTTCCGCCTCAAGTGTCTGTTATCACACGA
GCTCCTTGCGACAATGTAGTCGGTCGTCATGAAGATATGCTACCATCTAG
TCCGTGGCCATCAAAACATGCTGTGAGTAGCCCTAGGTTCCGTGCACCTC
ACCTGTTCAAATGGTGCACTATACCGGGCATCAGCTGCAAGATATCGCGT
ACGGTATACCAGAGAGAAATGGCAATACTAATAGTAATAGTAATCGTTCC
TGCCGTAAAAGGTGCATCCAGCCCTGCGCTATTTCCTGACCAATCAGCAA
CGAATTCTGCGTAA
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