mRNA_M-pyrifera_M_contig1372.6043.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig1372.6043.1 vs. uniprot
Match: D7FML5_ECTSI (Putative: similar to cytoplasmic dynein intermediate chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FML5_ECTSI) HSP 1 Score: 471 bits (1211), Expect = 3.450e-160 Identity = 229/274 (83.58%), Postives = 241/274 (87.96%), Query Frame = 1
Query: 25 QVVVWDTRAKSLPVQRTPLSATGHTYPVYNLHIGGTDNAQSLLTASTDGRVSMWNPSQLAQPLQVMRLTHGGKPVTISSMSVAQGDDQKELVVGSESGGIYTTPLHFRNSGVVEEYLGHYGLVTSVDANPSPSKSLRRLVISSSVDWTTRLWRLGKG-NTPIQSMSHGTYDYVCDAKWSPKHPALFVTANISGELGLWNLNHSMEEPFAPPAKVVDRCALTRMAWSPDGRRLCVGDAKGYARVFNMDQETALPRPDEDSRLEASLAVKANGAVP 843
QVVVWDTRAKSLPVQRTPLSATGHTYPVYNLHIGGTDNA SLLTAST+GRVS GKPVTISSM+VAQGD+QK +VVGSESGGIYTTPLHFRNSGVVEEY GHYGLVTSVDANPS SK LR LV+SSSVDWTTRLWRLG+G N +Q+++HGTYDYVCDAKWSPKHPALFVTANISGELGLWNLNHSMEEPF PP KVVDRCALTRMAWSPDGRRLCVGDAKGYARVFNMDQETALPR DED RLEA+LAVKANG +P
Sbjct: 426 QVVVWDTRAKSLPVQRTPLSATGHTYPVYNLHIGGTDNAPSLLTASTEGRVSTXXXXXXXXXXXXXXXXXXGKPVTISSMAVAQGDEQKNIVVGSESGGIYTTPLHFRNSGVVEEYSGHYGLVTSVDANPSASKPLRGLVLSSSVDWTTRLWRLGQGSNACVQTLTHGTYDYVCDAKWSPKHPALFVTANISGELGLWNLNHSMEEPFTPPVKVVDRCALTRMAWSPDGRRLCVGDAKGYARVFNMDQETALPRTDEDLRLEAALAVKANGTIP 699
BLAST of mRNA_M-pyrifera_M_contig1372.6043.1 vs. uniprot
Match: A0A836C896_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C896_9STRA) HSP 1 Score: 270 bits (690), Expect = 1.560e-84 Identity = 130/271 (47.97%), Postives = 184/271 (67.90%), Query Frame = 1
Query: 25 QVVVWDTRAKSLPVQRTPLSATGHTYPVYNLHIGGTDNAQSLLTASTDGRVSMWNPSQLAQPLQVMRLT-------HGGKPVTISSMSVAQGDDQKELVVGSESGGIYTTPLHFRNSGVVEEYLGHYGLVTSVDANPSPSKSLRRLVISSSVDWTTRLWRLGKGNTPIQSMSHGTYDYVCDAKWSPKHPALFVTANISGELGLWNLNHSMEEPFAPPAKVVDRCALTRMAWSPDGRRLCVGDAKGYARVFNMDQETALPRPDEDSRLEASL 816
QVV WD RA SLPVQ+TP+S HT P++ + + GT A +L+TASTDGRV+ WNP QL QP +V++L G +++S ++ G+ +L+VG +SG I +H ++GV E+ GH+G+VT++D NPS +K+L+ LV+SSS+DWTTRLW L + + P+ + SH +YDYVCD +WSP HPALF TAN++G+L LWN+ S++ P PP KV ALT++AWS +G RL GD G V+ + ++ ALPR DE+ RLE L
Sbjct: 203 QVVTWDLRATSLPVQQTPVSDAAHTRPIFGMAMEGTGAAHALVTASTDGRVAWWNPRQLLQPNEVLQLALAQSDNDASGGGLSVSCIACVPGETV-QLLVGMDSGRILAVAVHTHSAGVQREFHGHFGMVTALDTNPSKAKALQELVLSSSMDWTTRLWSLRQSDKPLVTFSHDSYDYVCDVRWSPVHPALFATANVAGDLTLWNVTASLDTPVTPPCKVSGN-ALTKLAWSREGCRLAAGDVTGAVHVYAIAEDMALPRHDEEHRLERLL 471
BLAST of mRNA_M-pyrifera_M_contig1372.6043.1 vs. uniprot
Match: F4PS77_CAVFA (Cytoplasmic dynein intermediate chain n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PS77_CAVFA) HSP 1 Score: 213 bits (542), Expect = 4.810e-61 Identity = 112/269 (41.64%), Postives = 159/269 (59.11%), Query Frame = 1
Query: 25 QVVVWDTRAKSLPVQRTPLSATGHTYPVYNLHIGGTDNAQSLLTASTDGRVSMWNPSQLAQPLQVMRLT-HGGKPVTISSMS-------VAQGDDQKELVVGSESGGIYTTPLHFRNSGVVEEYLGHYGLVTSVDANPSP-SKSLRRLVISSSVDWTTRLWRLGKGNTPIQSMSHGTYDYVCDAKWSPKHPALFVTANISGELGLWNLNHSMEEPFAPPAKVVDRCALTRMAWSPDGRRLCVGDAKGYARVFNMDQETALPRPDEDSRL 804
Q+VVWDTR+KS PVQRTPLS+ GHT+PVY++ + G+ NA +L++ STDG++ WN L+QP++ + L T+S+ S V Q + VGSE G IY H +G+ + Y GH+G +TS+D +PS S L +SSS DWTTRLW K P+ S DYV DA+WSP HP++FVT + +G++ LW+LN + P + AL R++WS DG+RL VGD+ G +++ A P PD S+
Sbjct: 344 QIVVWDTRSKSTPVQRTPLSSVGHTHPVYSMSVVGSTNANTLISVSTDGKLCSWNLDNLSQPVETLDLNAKNNTSSTVSATSSIAVTSLVFQETEMNAFFVGSEDGSIYQAHRHGSKTGISDRYKGHHGPITSIDFHPSRGSIDFGNLFLSSSTDWTTRLWSTNKTEAPVYSFEDYV-DYVYDARWSPVHPSVFVTGDGNGQMCLWDLNEETDAPIV--RNKISSHALNRLSWSGDGKRLLVGDSTGQLSLYDTSPY-ANPEPDSWSKF 608
BLAST of mRNA_M-pyrifera_M_contig1372.6043.1 vs. uniprot
Match: A0A4W3IJ31_CALMI (Uncharacterized protein n=1 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3IJ31_CALMI) HSP 1 Score: 203 bits (516), Expect = 1.860e-60 Identity = 112/275 (40.73%), Postives = 159/275 (57.82%), Query Frame = 1
Query: 25 QVVVWDTRA-KSLPVQRTPLSATGHTYPVYNLHIGGTDNAQSLLTASTDGRVSMWNPSQLAQPLQVMRLTHG-GKPVTISSMSVAQGDDQKELVVGSESGGIYTTPLHFRNSGVVEEYLGHYGLVTSVDANPSPSK-SLRRLVISSSVDWTTRLWRLGKGNTPIQSMSHGTYDYVCDAKWSPKHPALFVTANISGELGLWNLNHSMEEPFAPPAKVVDRCALTRMAWSPDGRRLCVGDAKGYARVFNMDQETALPRPDEDSRLEASLA-VKANGA 837
Q+V+WD R+ K PVQRTPLSA HT+PVY +++ G+ NA +L++ STDG++ W+ L+QP + L H K V ++ MS GD VVGSE G +YT H +G+ E + GH G +T + + + L I+SS DWT +LW K N P+ S + DYV D WSP HPALF + G L LWNLN+ E P A V AL R+ W+ GR + VGD++G ++++ ++ A+PR DE +R +LA + AN A
Sbjct: 31 QIVLWDNRSNKRTPVQRTPLSAAAHTHPVYCVNVVGSQNAHNLISVSTDGKICSWSLDMLSQPQDSIELMHKQSKAVAVTCMSFPLGD-VNNFVVGSEEGSVYTACRHGSKAGISEIFDGHQGPITGIHYHTAAGPVDFSHLFITSSFDWTVKLWTT-KNNKPLYSFEDNS-DYVYDVMWSPTHPALFACVDGMGRLDLWNLNNDTEVPTAS-VTVNSNPALNRVRWAQSGREIAVGDSEGQILIYDVGEQIAVPRNDEWTRFARTLAEINANRA 301
BLAST of mRNA_M-pyrifera_M_contig1372.6043.1 vs. uniprot
Match: A0A0D2WJ75_CAPO3 (Uncharacterized protein n=2 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WJ75_CAPO3) HSP 1 Score: 211 bits (538), Expect = 2.000e-60 Identity = 109/266 (40.98%), Postives = 156/266 (58.65%), Query Frame = 1
Query: 28 VVVWDTRAKSLPVQRTPLSATGHTYPVYNLHIGGTDNAQSLLTASTDGRVSMWNPSQLAQPLQVMRLTHGGKPVTISSMSVAQGDDQKELVVGSESGGIYTTPLHFRNSGVVEEYLGHYGLVTSVDANPSPS--KSLRRLVISSSVDWTTRLWRLGKGNTPIQSMSHGTYDYVCDAKWSPKHPALFVTANISGELGLWNLNHSMEEPFAPPAKVVDRCALTRMAWSPDGRRLCVGDAKGYARVFNMDQETALPRPDEDSRLEASLA 819
+V+WDTRAK+ PVQRTPL++ HT+PVY L + GT NA +L++ STDGR+ W+ AQP H P+ ++ D+ +VG E G + H R +GV GH+G VT+V ++P+ + + L+ISSS+DW+ +LW K TPI S + DY+ DA+WSP HPA+F T + + L LWNLN +E P + AL R+ WS DG ++ VGDA G V+N+ ++ A PR DE S L ++LA
Sbjct: 345 IVLWDTRAKTTPVQRTPLTSACHTHPVYCLEMVGTQNAHNLISVSTDGRMCAWSMDMFAQPQTKSEPRHERLPILAATALAFPEDEIAHFIVGGEDGTVGLGSRHGRQAGVHSTLAGHHGPVTAVHSHPTINNYRDFNDLIISSSMDWSVKLWS-SKSRTPIHSFE-ASGDYIYDAQWSPVHPAVFATVDGASRLDLWNLNGDIEVPAVSTTIDANGAALNRLRWSADGSKVAVGDADGTVHVYNIGEKFAQPRADETSILRSTLA 608
BLAST of mRNA_M-pyrifera_M_contig1372.6043.1 vs. uniprot
Match: A0A6P3VIX4_CLUHA (cytoplasmic dynein 1 intermediate chain 1 isoform X6 n=27 Tax=Clupeiformes TaxID=32446 RepID=A0A6P3VIX4_CLUHA) HSP 1 Score: 211 bits (536), Expect = 2.720e-60 Identity = 111/273 (40.66%), Postives = 162/273 (59.34%), Query Frame = 1
Query: 25 QVVVWDTRA-KSLPVQRTPLSATGHTYPVYNLHIGGTDNAQSLLTASTDGRVSMWNPSQLAQPLQVMRLTHG-GKPVTISSMSVAQGDDQKELVVGSESGGIYTTPLHFRNSGVVEEYLGHYGLVTSVDA-NPSPSKSLRRLVISSSVDWTTRLWRLGKGNTPIQSMSHGTYDYVCDAKWSPKHPALFVTANISGELGLWNLNHSMEEPFAPPAKVVDRCALTRMAWSPDGRRLCVGDAKGYARVFNMDQETALPRPDEDSRLEASLA-VKAN 831
Q+V+WD R+ + PVQRTPLS+ HT+PVY +++ GT NA +L+T STDG++ W+ L+QP++ M L + KPV ++ M+ GD VVGSE G +YT H +G+ E + GH G VT + N L I+SS DWT +LW K N P+ S DYV D WSP HPALF + + G L LWNLN+ E P A V CAL R+ W+ GR + VGD++G+ ++++ ++ A+P P++ +R +L ++AN
Sbjct: 336 QIVLWDNRSHRRTPVQRTPLSSAAHTHPVYCVNVVGTQNANNLITVSTDGKMCSWSLDMLSQPMESMELVYNKSKPVAVTGMAFPAGD-VNNFVVGSEEGTVYTASRHGSKAGIGEMFEGHQGPVTGISCHNALGPIDFSHLFITSSFDWTVKLWST-KHNKPLYSFEDNA-DYVYDVMWSPVHPALFASVDGMGRLDLWNLNNDTEVPTAS-VTVEGACALNRVRWASGGREVAVGDSEGHVWIYDVGEQLAVPHPEDWNRFARTLVEIRAN 604
BLAST of mRNA_M-pyrifera_M_contig1372.6043.1 vs. uniprot
Match: A0A6P8IDY1_ACTTE (cytoplasmic dynein 1 intermediate chain 2-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8IDY1_ACTTE) HSP 1 Score: 210 bits (535), Expect = 3.480e-60 Identity = 113/275 (41.09%), Postives = 164/275 (59.64%), Query Frame = 1
Query: 25 QVVVWDTRA-KSLPVQRTPLSATGHTYPVYNLHIGGTDNAQSLLTASTDGRVSMWNPSQLAQPLQVMRLTHG-GKPVTISSMSVAQGDDQKELVVGSESGGIYTTPLHFRNSGVVEEYLGHYGLVTSVDANPSPSK-SLRRLVISSSVDWTTRLWRLGKGNTPIQSMSHGTYDYVCDAKWSPKHPALFVTANISGELGLWNLNHSMEEPFAPPAKVVDRCALTRMAWSPDGRRLCVGDAKGYARVFNMDQETALPRPDEDSRLEASLA-VKANGA 837
Q+V+WD R+ K PVQRTPLSAT HT+PVY +++ GT NA +L++ STDG++ W+ L+QP M L + K V ++ MS GD VVGSE G +YT H +G+ + + GHYG VT +D + + + L ++SS DWT +LW K + P+ S DY+ D +WSP HPALF TA+ SG L LWNLN+ E P +L R+ W+ G ++ GD G +F++ ++ A+PRPDE SRL+ +L ++AN +
Sbjct: 324 QIVLWDNRSSKRTPVQRTPLSATAHTHPVYCVNVVGTQNAHNLISISTDGKMCSWSLDMLSQPQDNMELQYKQSKAVAVTCMSFMAGD-VNNFVVGSEEGTVYTACRHGSKAGISDVFEGHYGPVTGIDTHSASGQIDFSYLFLTSSFDWTLKLWS-HKSHRPVYSFEDNG-DYIYDVQWSPIHPALFATADGSGRLDLWNLNNDTEVPITSTT-TESMTSLNRVKWTHSGHQIAAGDDDGRVHIFDVGEQLAVPRPDEWSRLQHTLMDIQANAS 594
BLAST of mRNA_M-pyrifera_M_contig1372.6043.1 vs. uniprot
Match: UPI0006C9A794 (cytoplasmic dynein 1 intermediate chain n=1 Tax=Copidosoma floridanum TaxID=29053 RepID=UPI0006C9A794) HSP 1 Score: 208 bits (530), Expect = 3.620e-60 Identity = 114/259 (44.02%), Postives = 152/259 (58.69%), Query Frame = 1
Query: 25 QVVVWDTRA-KSLPVQRTPLSATGHTYPVYNLHIGGTDNAQSLLTASTDGRVSMWNPSQLAQPLQVMRLTHG-GKPVTISSMSVAQGDDQKELVVGSESGGIYTTPLHFRNSGVVEEYLGHYGLVTSVDANPSPSK-SLRRLVISSSVDWTTRLWRLGKGNTPIQSMSHGTYDYVCDAKWSPKHPALFVTANISGELGLWNLNHSMEEPFAPPAKVVDRCALTRMAWSPDGRRLCVGDAKGYARVFNMDQETALPRPDE 792
QVV+WD R K P+QRTPLSAT HT+PVY L + GT NA +L++ STDG++ W+ L+QP + + L + K + ++ ++ GD VVGSE G IY+ H +GV E Y GH G +T VD + P L +SSS+DWT +LW L K N P+ S H + DYV D WSP HPA+F + SG L LWNLN E P A A V AL R++W+P G + VGD G V+++ + A PR DE
Sbjct: 230 QVVLWDNRVQKRTPIQRTPLSATAHTHPVYCLKVVGTQNAHNLISISTDGKLCSWSLDMLSQPQETLELQNKQSKQIAVTQLAFPSGD-VNNFVVGSEDGSIYSACRHGTRAGVTETYEGHQGPITGVDTHAVPGGIDFSHLFLSSSLDWTIKLWSL-KENKPLYSFEHNS-DYVYDVAWSPTHPAVFAAVDDSGRLDLWNLNQDTEVPTAS-AMVDGSPALNRVSWAPSGFHITVGDDSGRIWVYDVAEHLAHPRMDE 484
BLAST of mRNA_M-pyrifera_M_contig1372.6043.1 vs. uniprot
Match: D3AZM5_POLPP (Cytoplasmic dynein intermediate chain n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3AZM5_POLPP) HSP 1 Score: 210 bits (534), Expect = 8.160e-60 Identity = 114/265 (43.02%), Postives = 158/265 (59.62%), Query Frame = 1
Query: 25 QVVVWDTRAKSLPVQRTPLSATGHTYPVYNLHIGGTDNAQSLLTASTDGRVSMWNPSQLAQPLQVMRLTHGGKPVTISSMS-------VAQGDDQKELVVGSESGGIYTTPLHFRNSGVVEEYLGHYGLVTSVDANPSP--SKSLRRLVISSSVDWTTRLWRLGKGNTPIQSMSHGTYDYVCDAKWSPKHPALFVTANISGELGLWNLNHSMEEPFAPPAKVVDRCALTRMAWSPDGRRLCVGDAKGYARVFNMDQETALPRPDE 792
Q+VVWDTR+KS PVQRTPLS+ GHT+PVY++ + G+ NA SL++ STDG++ W+ L+QP++ + L T+S+ + V + VG+E G IY H +GV E + HYG VTS+D +P S L +SSS DWT RLW K + PI S T DYV DA+WSP +P++F T + SG+L LW+LN E P AK R +L R++WS DGRRL VGD+ G +++ Q A P+ D+
Sbjct: 348 QIVVWDTRSKSTPVQRTPLSSVGHTHPVYSMAVVGSANANSLVSISTDGKLCSWSLDNLSQPIETLDLNSRANTATVSTTTSIAVTSLVFPETEMNTFYVGTEEGVIYQAQAHGAKAGVNERFKAHYGPVTSIDFHPPSRNSSEFSNLFLSSSTDWTCRLWSSSKPDQPIYSFEDYT-DYVFDARWSPVNPSIFATGDGSGQLALWDLNEETEAPIFR-AKTSSR-SLNRLSWSADGRRLLVGDSGGQLSLYDSSQ-FASPQVDD 608
BLAST of mRNA_M-pyrifera_M_contig1372.6043.1 vs. uniprot
Match: T2ME57_HYDVU (Cytoplasmic dynein 1 intermediate chain 2 n=1 Tax=Hydra vulgaris TaxID=6087 RepID=T2ME57_HYDVU) HSP 1 Score: 209 bits (532), Expect = 8.410e-60 Identity = 114/273 (41.76%), Postives = 163/273 (59.71%), Query Frame = 1
Query: 25 QVVVWDTRA-KSLPVQRTPLSATGHTYPVYNLHIGGTDNAQSLLTASTDGRVSMWNPSQLAQPLQVMRLTHGG-KPVTISSMSVAQGDDQKELVVGSESGGIYTTPLHFRNSGVVEEYLGHYGLVTSVDANPSPSK-SLRRLVISSSVDWTTRLWRLGKGNTPIQSMSHGTYDYVCDAKWSPKHPALFVTANISGELGLWNLNHSMEEPFAPPAKVVDRCALTRMAWSPDGRRLCVGDAKGYARVFNMDQETALPRPDEDSRLEASLA-VKAN 831
Q+V+WD R+ K PVQ+TPLSA HT+PVY + + GT NA +L+T STDG++ W+ L+QP +VM L H KPV+++S S GD VVGSE G IY+ H +G+VE++ GH+G VTS+D N P L ++SS DWT RLW +T + DYV D +WSP +PALF + G L LWNLN+ E P + + A+ R+ WS G +L GD +G+ V+++ ++ A+PR DE +R +L ++AN
Sbjct: 311 QIVLWDNRSRKRAPVQKTPLSAAAHTHPVYCVEVVGTLNAHNLITFSTDGKMCSWSLDMLSQPQEVMDLQHTHTKPVSVTSASFQPGD-VNNFVVGSEDGSIYSAQRHGSKAGIVEQFDGHHGPVTSIDYNAVPGPIDFSHLFLTSSFDWTIRLW--SNKSTKVLYSFEDNGDYVLDTQWSPINPALFAAVDGMGRLDLWNLNNDTEVPTSS-ITIASNSAINRVKWSGSGLQLAAGDDEGHIYVYDVGEQLAVPRSDEWARFANTLQDIQAN 579 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1372.6043.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig1372.6043.1 >prot_M-pyrifera_M_contig1372.6043.1 ID=prot_M-pyrifera_M_contig1372.6043.1|Name=mRNA_M-pyrifera_M_contig1372.6043.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=282bp MFAVYTVYQVVVWDTRAKSLPVQRTPLSATGHTYPVYNLHIGGTDNAQSLback to top mRNA from alignment at M-pyrifera_M_contig1372:3754..12075- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig1372.6043.1 ID=mRNA_M-pyrifera_M_contig1372.6043.1|Name=mRNA_M-pyrifera_M_contig1372.6043.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=8322bp|location=Sequence derived from alignment at M-pyrifera_M_contig1372:3754..12075- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig1372:3754..12075- >mRNA_M-pyrifera_M_contig1372.6043.1 ID=mRNA_M-pyrifera_M_contig1372.6043.1|Name=mRNA_M-pyrifera_M_contig1372.6043.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1692bp|location=Sequence derived from alignment at M-pyrifera_M_contig1372:3754..12075- (Macrocystis pyrifera P11B4 male)back to top |