mRNA_M-pyrifera_M_contig13719.6041.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13719.6041.1
Unique NamemRNA_M-pyrifera_M_contig13719.6041.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig13719.6041.1 vs. uniprot
Match: A0A6H5KT07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT07_9PHAE)

HSP 1 Score: 229 bits (583), Expect = 3.670e-67
Identity = 112/122 (91.80%), Postives = 117/122 (95.90%), Query Frame = 1 
Query:    4 LSQWVSKHVGENPVLARTGGPLIARGVRGAAVAMLWHSGYATAAQRMASALAATPESARARVDSQVPPYFLLETWRKAAGLKSWAKSRRDRGTPYEATASDLNRHCRFLLSLHPATGDRPVG 369
            LSQWVSKHVGENPVLARTGGPLIARGVRGAAVAMLWHSGYA AAQRMA+ALAA P +AR+RVDSQVPPYFLLETWRKAAGLKSWAKSRRDRGTPYE TA+DL +HCRFLLSLHPATGDRPVG
Sbjct: 2939 LSQWVSKHVGENPVLARTGGPLIARGVRGAAVAMLWHSGYAAAAQRMAAALAAAPPAARSRVDSQVPPYFLLETWRKAAGLKSWAKSRRDRGTPYETTAADLAQHCRFLLSLHPATGDRPVG 3060
[Close]
BLAST of mRNA_M-pyrifera_M_contig13719.6041.1 vs. uniprot
Match: D8LCZ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCZ5_ECTSI)

HSP 1 Score: 223 bits (569), Expect = 2.820e-65
Identity = 110/119 (92.44%), Postives = 115/119 (96.64%), Query Frame = 1 
Query:    4 LSQWVSKHVGENPVLARTGGPLIARGVRGAAVAMLWHSGYATAAQRMASALAATPESARARVDSQVPPYFLLETWRKAAGLKSWAKSRRDRGTPYEATASDLNRHCRFLLSLHPATGDR 360
            LSQWVSKHVGENPVLARTGGPLIARGVRGAAVAMLWHSGYA AAQRMA+ALAA P +AR+RVDSQVPPYFLLETWRKAAGLKSWAKSRRDRGTPYEATA+DL +HCRFLLSLHPATGDR
Sbjct: 2742 LSQWVSKHVGENPVLARTGGPLIARGVRGAAVAMLWHSGYAAAAQRMAAALAAAPPAARSRVDSQVPPYFLLETWRKAAGLKSWAKSRRDRGTPYEATAADLAQHCRFLLSLHPATGDR 2860
[Close]
BLAST of mRNA_M-pyrifera_M_contig13719.6041.1 vs. uniprot
Match: A0A0W8DND8_PHYNI (NFX1-type zinc finger-containing protein 1 n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DND8_PHYNI)

HSP 1 Score: 59.3 bits (142), Expect = 9.760e-8
Identity = 39/117 (33.33%), Postives = 59/117 (50.43%), Query Frame = 1 
Query:    4 LSQWVSKHVGENPVLARTGGPLIARGVRGAAVAMLWHSGYATAAQRMASALAATPESARARVDSQVPPYF-LLETWRKAAGLKSWA-KSRRDRGTPYEATASDLNRHCRFLLSLHPA 348
            L QWVSKHVGE+P++   G P+ A   R    AM+WHSG+    ++          S     +S V P+  L+  WR A  +  WA +++   G+ Y   A  + R  +FLL + P+
Sbjct: 1501 LDQWVSKHVGESPLMRLGGEPMKATR-RTVCAAMIWHSGFLNFIKKQID------NSQSNFTESDVRPHDNLMHIWRAAQRVIEWAIRTKNSMGSSYAVVAGLVIRKAQFLLEIEPS 1610
[Close]
BLAST of mRNA_M-pyrifera_M_contig13719.6041.1 vs. uniprot
Match: W2Q5T5_PHYPN (Uncharacterized protein n=11 Tax=Phytophthora TaxID=4783 RepID=W2Q5T5_PHYPN)

HSP 1 Score: 59.3 bits (142), Expect = 9.880e-8
Identity = 39/117 (33.33%), Postives = 59/117 (50.43%), Query Frame = 1 
Query:    4 LSQWVSKHVGENPVLARTGGPLIARGVRGAAVAMLWHSGYATAAQRMASALAATPESARARVDSQVPPYF-LLETWRKAAGLKSWA-KSRRDRGTPYEATASDLNRHCRFLLSLHPA 348
            L QWVSKHVGE+P++   G P+ A   R    AM+WHSG+    ++          S     +S V P+  L+  WR A  +  WA +++   G+ Y   A  + R  +FLL + P+
Sbjct: 1540 LDQWVSKHVGESPLMRLGGEPMKATR-RTVCAAMIWHSGFLNFIKKQID------NSQSNFTESDVRPHDNLMHIWRAAQRVIEWAIRTKNSMGSSYAVVAGLVIRKAQFLLEIEPS 1649
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13719.6041.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KT07_9PHAE3.670e-6791.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCZ5_ECTSI2.820e-6592.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A0W8DND8_PHYNI9.760e-833.33NFX1-type zinc finger-containing protein 1 n=1 Tax... [more]
W2Q5T5_PHYPN9.880e-833.33Uncharacterized protein n=11 Tax=Phytophthora TaxI... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13719contigM-pyrifera_M_contig13719:663..1031 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score224.2
Seed ortholog evalue3.4e-56
Seed eggNOG ortholog2880.D8LCZ5
KEGG koko:K10614
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5184@1,KOG1426@2759
EC2.3.2.26
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Exons1
Model size369
Cds size369
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815823.8949268-CDS-M-pyrifera_M_contig13719:662..10311622815823.8949268-CDS-M-pyrifera_M_contig13719:662..1031Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13719 663..1031 -
1692277589.8840466-CDS-M-pyrifera_M_contig13719:662..10311692277589.8840466-CDS-M-pyrifera_M_contig13719:662..1031Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13719 663..1031 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13719.6041.1prot_M-pyrifera_M_contig13719.6041.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13719 663..1031 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13719.6041.1

>prot_M-pyrifera_M_contig13719.6041.1 ID=prot_M-pyrifera_M_contig13719.6041.1|Name=mRNA_M-pyrifera_M_contig13719.6041.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=123bp
TLSQWVSKHVGENPVLARTGGPLIARGVRGAAVAMLWHSGYATAAQRMAS
ALAATPESARARVDSQVPPYFLLETWRKAAGLKSWAKSRRDRGTPYEATA
SDLNRHCRFLLSLHPATGDRPVG
back to top

mRNA from alignment at M-pyrifera_M_contig13719:663..1031-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13719.6041.1 ID=mRNA_M-pyrifera_M_contig13719.6041.1|Name=mRNA_M-pyrifera_M_contig13719.6041.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=369bp|location=Sequence derived from alignment at M-pyrifera_M_contig13719:663..1031- (Macrocystis pyrifera P11B4 male)
ACTCTGTCGCAGTGGGTCTCGAAGCACGTGGGAGAGAATCCGGTGTTGGC
GAGGACTGGCGGGCCGCTGATTGCGCGAGGAGTTAGGGGCGCGGCGGTAG
CAATGCTCTGGCACTCGGGGTACGCGACGGCGGCGCAGCGGATGGCGTCA
GCGCTCGCGGCGACCCCGGAGTCGGCCCGGGCGCGGGTGGACTCTCAGGT
GCCCCCGTACTTCCTCCTGGAGACGTGGAGGAAGGCGGCGGGGCTAAAGT
CGTGGGCGAAAAGCAGGAGAGACCGAGGCACGCCCTATGAAGCCACCGCG
TCTGACCTGAACCGCCACTGCCGCTTCTTGCTCTCGCTCCATCCTGCCAC
GGGCGACAGGCCCGTGGGC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig13719:663..1031-

>mRNA_M-pyrifera_M_contig13719.6041.1 ID=mRNA_M-pyrifera_M_contig13719.6041.1|Name=mRNA_M-pyrifera_M_contig13719.6041.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=738bp|location=Sequence derived from alignment at M-pyrifera_M_contig13719:663..1031- (Macrocystis pyrifera P11B4 male)
ACTCTGTCGCAGTGGGTCTCGAAGCACGTGGGAGAGAATCCGGTGTTGGC
GAGGACTGGCGGGCCGCTGATTGCGCGAGGAGTTAGGGGCGCGGCGGTAG
CAATGCTCTGGCACTCGGGGTACGCGACGGCGGCGCAGCGGATGGCGTCA
GCGCTCGCGGCGACCCCGGAGTCGGCCCGGGCGCGGGTGGACTCTCAGGT
GCCCCCGTACTTCCTCCTGGAGACGTGGAGGAAGGCGGCGGGGCTAAAGT
CGTGGGCGAAAAGCAGGAGAGACCGAGGCACGCCCTATGAAGCCACCGCG
TCTGACCTGAACCGCCACTGCCGCTTCTTGCTCTCGCTCCATCCTGCCAC
GGGCGACAGGCCCGTGGGCACTCTGTCGCAGTGGGTCTCGAAGCACGTGG
GAGAGAATCCGGTGTTGGCGAGGACTGGCGGGCCGCTGATTGCGCGAGGA
GTTAGGGGCGCGGCGGTAGCAATGCTCTGGCACTCGGGGTACGCGACGGC
GGCGCAGCGGATGGCGTCAGCGCTCGCGGCGACCCCGGAGTCGGCCCGGG
CGCGGGTGGACTCTCAGGTGCCCCCGTACTTCCTCCTGGAGACGTGGAGG
AAGGCGGCGGGGCTAAAGTCGTGGGCGAAAAGCAGGAGAGACCGAGGCAC
GCCCTATGAAGCCACCGCGTCTGACCTGAACCGCCACTGCCGCTTCTTGC
TCTCGCTCCATCCTGCCACGGGCGACAGGCCCGTGGGC
back to top