mRNA_M-pyrifera_M_contig13712.6038.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13712.6038.1
Unique NamemRNA_M-pyrifera_M_contig13712.6038.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig13712.6038.1 vs. uniprot
Match: D7FYJ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYJ4_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 1.020e-27
Identity = 52/69 (75.36%), Postives = 62/69 (89.86%), Query Frame = 1 
Query:   10 QDVLDKLDDAATELMAGEGDPVMLMLGDSFMKCEEEYATEYCERKQEERQAILDSLMEEEKGILARQGV 216
            +D+LDKLDDA TELM GEGD VMLMLGDSFM+CEEE+AT+YCER+QE+RQ+ LD L++EEK IL RQGV
Sbjct:   35 KDILDKLDDATTELMTGEGDSVMLMLGDSFMECEEEFATDYCERQQEKRQSKLDDLVDEEKTILLRQGV 103
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BLAST of mRNA_M-pyrifera_M_contig13712.6038.1 vs. uniprot
Match: A0A6H5KTT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTT7_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 7.720e-19
Identity = 39/52 (75.00%), Postives = 46/52 (88.46%), Query Frame = 1 
Query:   10 QDVLDKLDDAATELMAGEGDPVMLMLGDSFMKCEEEYATEYCERKQEERQAI 165
            +D+LDKLDDA TELM GEGD VMLMLGDSFM+CEEE+AT+YCER+QE   A+
Sbjct:   31 KDILDKLDDATTELMTGEGDSVMLMLGDSFMECEEEFATDYCERQQENCSAV 82
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BLAST of mRNA_M-pyrifera_M_contig13712.6038.1 vs. uniprot
Match: A0A7S3YAJ8_HETAK (Prefoldin subunit 4 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YAJ8_HETAK)

HSP 1 Score: 82.4 bits (202), Expect = 1.580e-18
Identity = 40/70 (57.14%), Postives = 53/70 (75.71%), Query Frame = 1 
Query:    1 KPRQDVLDKLDDAATELMAGEGDPVMLMLGDSFMKCEEEYATEYCERKQEERQAILDSLMEEEKGILARQ 210
            K  +D  D+LDDA TELM G+GD V + +G+SF++C EEYATEYCE++QE+ Q +LD+  EEE  IL RQ
Sbjct:   39 KALKDKFDRLDDANTELMTGDGDDVKIFMGESFIQCSEEYATEYCEKEQEKLQGMLDTFKEEETAILERQ 108
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BLAST of mRNA_M-pyrifera_M_contig13712.6038.1 vs. uniprot
Match: A0A7S2V806_9STRA (Prefoldin subunit 4 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V806_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.410e-14
Identity = 37/70 (52.86%), Postives = 52/70 (74.29%), Query Frame = 1 
Query:    1 KPRQDVLDKLDDAATELMAGEGDPVMLMLGDSFMKCEEEYATEYCERKQEERQAILDSLMEEEKGILARQ 210
            K  ++ LDKLDDA+TELM  +G  V L+LG+ F++C E+YATEY +++QE+ Q ++D L EEE  IL RQ
Sbjct:   40 KLHKENLDKLDDASTELMTEDGSGVKLLLGEVFIECNEDYATEYLDKEQEKTQVLVDQLSEEEHTILERQ 109
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BLAST of mRNA_M-pyrifera_M_contig13712.6038.1 vs. uniprot
Match: A0A6V0ZXN8_9STRA (Prefoldin subunit 4 n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6V0ZXN8_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 4.400e-14
Identity = 37/64 (57.81%), Postives = 47/64 (73.44%), Query Frame = 1 
Query:   19 LDKLDDAATELMAGEGDPVMLMLGDSFMKCEEEYATEYCERKQEERQAILDSLMEEEKGILARQ 210
            L+K+DDA+TELM G+GD VML LG +  +  E+ ATEYCE + E +Q ILD L EEE GI+ RQ
Sbjct:   51 LEKIDDASTELMMGDGDAVMLSLGGAMFEATEDEATEYCEAEVERQQKILDKLSEEEAGIVERQ 114
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BLAST of mRNA_M-pyrifera_M_contig13712.6038.1 vs. uniprot
Match: W7TPN2_9STRA (Prefoldin subunit 4 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TPN2_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 3.270e-13
Identity = 37/64 (57.81%), Postives = 46/64 (71.88%), Query Frame = 1 
Query:   19 LDKLDDAATELMAGEGDPVMLMLGDSFMKCEEEYATEYCERKQEERQAILDSLMEEEKGILARQ 210
            L+KLDDA TELM G G PV L LG++FM   E+YATE+CERKQE+ QA ++ L  E+  I  RQ
Sbjct:   62 LEKLDDAVTELMVGVGGPVRLSLGEAFMDVSEDYATEHCERKQEQLQAKVEELGREKGKIATRQ 125
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BLAST of mRNA_M-pyrifera_M_contig13712.6038.1 vs. uniprot
Match: B5YND4_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YND4_THAPS)

HSP 1 Score: 67.0 bits (162), Expect = 2.040e-12
Identity = 33/66 (50.00%), Postives = 48/66 (72.73%), Query Frame = 1 
Query:   16 VLDKLDDAATELMAGEGDPVMLMLGDSFMKCEEEYATEYCERKQEERQAILDSLMEEEKGILARQG 213
            +L+K+DDA+TELM G GD VML LG++  +  E+ ATE+CE + E+ QA+LD L +EE  I+ +Q 
Sbjct:   50 LLEKIDDASTELMMGNGDKVMLRLGEAMFEATEDEATEFCEAEMEKHQAVLDDLDKEEADIVEKQA 115
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BLAST of mRNA_M-pyrifera_M_contig13712.6038.1 vs. uniprot
Match: A0A835Z9N6_9STRA (Prefoldin subunit 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9N6_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 9.700e-12
Identity = 41/81 (50.62%), Postives = 47/81 (58.02%), Query Frame = 1 
Query:   19 LDKLDDAATELMAGEGDPVMLMLGDSFMKCEEEYATEYCERKQ----------------EERQAILDSLMEEEKGILARQG 213
            LD LDDA TELM G+G  V L LGD+F+  EEE+ATEYCE+KQ                E  QA LD+L  EE  IL RQ 
Sbjct:   44 LDNLDDATTELMTGDGGKVNLQLGDAFVVVEEEFATEYCEKKQSIAPAESXXXXXXXXXEGVQAKLDALSREEDSILKRQA 124
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13712.6038.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FYJ4_ECTSI1.020e-2775.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KTT7_9PHAE7.720e-1975.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3YAJ8_HETAK1.580e-1857.14Prefoldin subunit 4 n=1 Tax=Heterosigma akashiwo T... [more]
A0A7S2V806_9STRA1.410e-1452.86Prefoldin subunit 4 n=1 Tax=Fibrocapsa japonica Ta... [more]
A0A6V0ZXN8_9STRA4.400e-1457.81Prefoldin subunit 4 n=1 Tax=Skeletonema marinoi Ta... [more]
W7TPN2_9STRA3.270e-1357.81Prefoldin subunit 4 n=2 Tax=Monodopsidaceae TaxID=... [more]
B5YND4_THAPS2.040e-1250.00Predicted protein n=1 Tax=Thalassiosira pseudonana... [more]
A0A835Z9N6_9STRA9.700e-1250.62Prefoldin subunit 4 n=1 Tax=Tribonema minus TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13712contigM-pyrifera_M_contig13712:144..908 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.5
Seed ortholog evalue1.1e-20
Seed eggNOG ortholog2880.D7FYJ4
Preferred namePFDN4
KEGG koko:K09550,ko:K20177
KEGG Pathwayko04138,map04138
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005829,GO:0006355,GO:0006357,GO:0006457,GO:0006508,GO:0006511,GO:0006515,GO:0006807,GO:0006950,GO:0007021,GO:0008092,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010033,GO:0010468,GO:0010498,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0015631,GO:0016043,GO:0016272,GO:0019219,GO:0019222,GO:0019538,GO:0019941,GO:0022607,GO:0030163,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032784,GO:0032786,GO:0032968,GO:0032991,GO:0033554,GO:0034243,GO:0034622,GO:0035966,GO:0035967,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051087,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051603,GO:0051716,GO:0051788,GO:0060255,GO:0065003,GO:0065007,GO:0070887,GO:0071218,GO:0071310,GO:0071629,GO:0071704,GO:0071840,GO:0080090,GO:1901564,GO:1901565,GO:1901575,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
EggNOG free text desc.unfolded protein binding
EggNOG OGsCOG1382@1,KOG1760@2759
Ec32 ortholog descriptionPrefoldin beta-like
Ec32 orthologEc-23_002980.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110,ko04131
Exons2
Model size228
Cds size228
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815823.7078094-CDS-M-pyrifera_M_contig13712:143..2931622815823.7078094-CDS-M-pyrifera_M_contig13712:143..293Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13712 144..293 +
1692277589.7673244-CDS-M-pyrifera_M_contig13712:143..2931692277589.7673244-CDS-M-pyrifera_M_contig13712:143..293Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13712 144..293 +
1622815823.7221017-CDS-M-pyrifera_M_contig13712:830..9081622815823.7221017-CDS-M-pyrifera_M_contig13712:830..908Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13712 831..908 +
1692277589.780792-CDS-M-pyrifera_M_contig13712:830..9081692277589.780792-CDS-M-pyrifera_M_contig13712:830..908Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13712 831..908 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13712.6038.1prot_M-pyrifera_M_contig13712.6038.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13712 144..908 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13712.6038.1

>prot_M-pyrifera_M_contig13712.6038.1 ID=prot_M-pyrifera_M_contig13712.6038.1|Name=mRNA_M-pyrifera_M_contig13712.6038.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=76bp
KPRQDVLDKLDDAATELMAGEGDPVMLMLGDSFMKCEEEYATEYCERKQE
ERQAILDSLMEEEKGILARQGVRVV*
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mRNA from alignment at M-pyrifera_M_contig13712:144..908+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13712.6038.1 ID=mRNA_M-pyrifera_M_contig13712.6038.1|Name=mRNA_M-pyrifera_M_contig13712.6038.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=765bp|location=Sequence derived from alignment at M-pyrifera_M_contig13712:144..908+ (Macrocystis pyrifera P11B4 male)
AAACCTCGACAGGATGTTCTAGATAAGCTAGACGACGCGGCTACGGAGCT
CATGGCGGGGGAGGGTGACCCGGTGATGCTCATGCTGGGCGATAGTTTTA
TGAAGTGCGAGGAGGAGTACGCGACGGAGTACTGCGAGCGGAAGCAAGAG
GTTCGGACCCTGGGGGCATTGCGGTTCGGTTACGTTCTGTTCGATTGTTC
GGATGGTTTGGTTCAGTTCGGTTCGCCTCGTTTCCGCTTGGTTCGGCTCC
GCTCGATTCTTCTCCGTTCGGTTCCGTCTGGTTCGGTACGGTTCAGTAAT
GTTTGGTTCGGCTCGGTTGTGCTCCGCTCGATACGGCTCGGTTCGGTTTG
GTCTTTGTTCGGTACGGTCCAGTACGATTTGGTTCGGTTCGATTCGGTAC
GGTTTGGTTCGGTTCGTTTCAGTACGGTTTGGTTTGGTTCGATTCGGTTG
GGTTCGGTTTAGATTCGGTATGGCGCTTGCTACGATCGCGGTGGGTATTT
AGCACTTTTCGTCCAAACGTATTTCTGAGGTTTCAACTATTCTTGCAATG
CTGCTGCAGCTTTAATCTGTTGCGGCTAACTCGGGGTTCGACCCGCCAAT
TTTCAATTTTTCCTGGTACTGTGGATGTAAGTAGCGTTTAACCTACGTAC
TGCTTTGGTTCGTGTTTTGTTTGATGTTTGTTTTCAGGAGAGGCAGGCTA
TCCTGGATTCGCTGATGGAGGAGGAGAAGGGCATCCTCGCGCGGCAGGGG
GTGAGAGTCGTTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13712:144..908+

>mRNA_M-pyrifera_M_contig13712.6038.1 ID=mRNA_M-pyrifera_M_contig13712.6038.1|Name=mRNA_M-pyrifera_M_contig13712.6038.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=456bp|location=Sequence derived from alignment at M-pyrifera_M_contig13712:144..908+ (Macrocystis pyrifera P11B4 male)
AAACCTCGACAGGATGTTCTAGATAAGCTAGACGACGCGGCTACGGAGCT
CATGGCGGGGGAGGGTGACCCGGTGATGCTCATGCTGGGCGATAGTTTTA
TGAAGTGCGAGGAGGAGTACGCGACGGAGTACTGCGAGCGGAAGCAAGAG
AAACCTCGACAGGATGTTCTAGATAAGCTAGACGACGCGGCTACGGAGCT
CATGGCGGGGGAGGGTGACCCGGTGATGCTCATGCTGGGCGATAGTTTTA
TGAAGTGCGAGGAGGAGTACGCGACGGAGTACTGCGAGCGGAAGCAAGAG
GAGAGGCAGGCTATCCTGGATTCGCTGATGGAGGAGGAGAAGGGCATCCT
CGCGCGGCAGGGGGTGAGAGTCGTTTGAGAGAGGCAGGCTATCCTGGATT
CGCTGATGGAGGAGGAGAAGGGCATCCTCGCGCGGCAGGGGGTGAGAGTC
GTTTGA
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