mRNA_M-pyrifera_M_contig13653.6023.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13653.6023.1
Unique NamemRNA_M-pyrifera_M_contig13653.6023.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13653.6023.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13653contigM-pyrifera_M_contig13653:1940..4452 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size490
Cds size489
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13653.6023.1prot_M-pyrifera_M_contig13653.6023.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13653 1940..4452 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815822.229168-CDS-M-pyrifera_M_contig13653:1939..22581622815822.229168-CDS-M-pyrifera_M_contig13653:1939..2258Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13653 1940..2258 -
1692277588.8497653-CDS-M-pyrifera_M_contig13653:1939..22581692277588.8497653-CDS-M-pyrifera_M_contig13653:1939..2258Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13653 1940..2258 -
1622815822.241925-CDS-M-pyrifera_M_contig13653:3683..37741622815822.241925-CDS-M-pyrifera_M_contig13653:3683..3774Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13653 3684..3774 -
1692277588.8606918-CDS-M-pyrifera_M_contig13653:3683..37741692277588.8606918-CDS-M-pyrifera_M_contig13653:3683..3774Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13653 3684..3774 -
1622815822.255525-CDS-M-pyrifera_M_contig13653:4373..44521622815822.255525-CDS-M-pyrifera_M_contig13653:4373..4452Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13653 4374..4452 -
1692277588.8708303-CDS-M-pyrifera_M_contig13653:4373..44521692277588.8708303-CDS-M-pyrifera_M_contig13653:4373..4452Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13653 4374..4452 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13653.6023.1

>prot_M-pyrifera_M_contig13653.6023.1 ID=prot_M-pyrifera_M_contig13653.6023.1|Name=mRNA_M-pyrifera_M_contig13653.6023.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=163bp
CASRGSRSWRTTSAKVISHASTGKRCAICLSWSQGRGQPDAEGPGQLCPT
LNVILSRQSDRNPSLPNRQANGEVQSWSLAQARRQSTCKNRCCKKLAKRM
MMADRLVSGWLSVRAPYSRESPLQKLLKLVHCYVSFFALDTAQRRRRLTS
MIWDFDVRGGGG*
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mRNA from alignment at M-pyrifera_M_contig13653:1940..4452-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13653.6023.1 ID=mRNA_M-pyrifera_M_contig13653.6023.1|Name=mRNA_M-pyrifera_M_contig13653.6023.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2513bp|location=Sequence derived from alignment at M-pyrifera_M_contig13653:1940..4452- (Macrocystis pyrifera P11B4 male)
TGCGCATCCCGGGGGTCAAGGTCGTGGCGGACAACATCGGCGAAGGTCAT
CTCTCATGCTTCCACGGGAAAGCGATGCGGTGAGTGGTACATGAAAAATC
CCATGCGCCCTGCCCATGTGATGGCCGTCTAGCTACTGCAGTACGTAGGT
CATTTTCTATCGTTGGGCCCTTTTTCGTCCCCAGCGTACAAGTTCGCAGA
TGAGCAGACCGCCCTGGCCACTTAATGAATTTCTACTTTTGAGGGTATGC
TTGGCGAGAAAGTGAGCCAATGAGAAGGCATCCGTTGGGCCGATTTACAA
CGAGAAGTAGTGCAAGCGTGCTGTCTTCGCAAGCACGGCGATCCGTTGGG
TTGTACTAGCATGTCTTCAGGCAAAAACGTTCTCTCCAGCGTGTGGCACA
TCGTACGGAGGATGAGTTTCACTAGATGAAAGAGCCTACTAGAAATAGAG
GTGACAGGATTTCCATGGAGTGCATACCGTGTGCGAGTGCAATCAGGTCG
TGCCTCAGACGCGCTTTTTACTTTGAGACCGAGCCCATAGTTCTATTATT
TGCCTGTATATTGGGATACAGACGATTGGCGACCTTCTACACTCTGGCCA
GTTGTCGGCAAAATCGCCTTGCTGCTTATCGCCTACCCCGTTAATTTTTT
GTACCGTCTCTATTTCCGGCACCCGAAGCGATATGTCTCAGTTGGAGCCA
AGGACGCGGTCAACCGGATGCGGAAGGCCCTGGCCAGCTGTGTCCGACCT
TGAATGTTATCCTATCAAGGTGAGGCTGGACACAATCTTGCCAGTGGGGG
GGGTGTACTGGATAGGAGAGATGTACTTGATCTCATGCATGGCCGTAGTC
ATATGACCATAGGCCCTCGCATCCCTACAATGCCGGGACGGAGCATTTCG
GGTTTTCACCGACCAGGCAGAGATTACTTGCACCAAGCGCGAAGCGCCGT
GAGGTGTCCGATGAGTCGCATGAAGGGTGAGCTACATCCTACTAAGAACC
GCTTGTGTCGTGGAGTTGCACATAGATGACAGCTTGAATGAGTTAATTAA
ATTTCCGGTGTAGCCACTTCCAGAAACTCTTGCCAGTGGAGGGGGGCTAT
TGGGCTATCAATAGCTAACACGAGGAAACATGGTAGATATGATGGCTCGA
TTATCTCGCAGTTAGCGGTAATGTGTGTGTGCGGCACCACACAAGGCTCG
ACCAAAGCGACTATTAACATATATCTCTCACGACCGTAGTACGCAAGCAT
CACTTAGTGAAAGCATACGTCAATATAGAAACACGAGTTGGATATATCGG
TTTCGTTTCCTGGATATCACCAATGAATTACACCCCCTTAAACTCCCCTC
CGCGCATTTACCATCGTCAAAATGTTTTGTGTGCACGGTTTATTGGGTAT
TTTGTCGTAACGTCTTGTAACCCGTACTGGTATTGTCGAAAGGGGGGGGA
TGCTAGACACAGGTGAGCATTGCAATATACCCAAGTAAGCAGCACCATCG
TCGTATAGGTCGCTTTCGCTCGTACTTCATTCGCAGACGTTCGCTATTCG
CCCCAGCAGGTAGTAAGCTCTGGTTCGAGCGAGTCCTCGTAAGGGTCGTG
GTCGATCCTGATTTTCCCATGAATTTTCTGGGAAAACGCAGGGGCATAGG
CCCAAAGTTGTTCTTAATAGGGTTGTACGCACAATGACCAATAGACGATA
TGCAGGAAGCTACGCCCGGGTGGTTCCACCCTATATTTACAGGGTGGGTT
TCAAGGATAACCCAGATTTGTACCGTGTTTTCATGCATGGCTAGTTACCG
CGCGAAATGTCAGCTAGACTAATACCTGGTATGAGGTTGGATACTGTAAA
ACGTGTACGCTATCGTAAGTTTGAGGTTGCAGGGACGAGCACACTGACGC
AGTAGACTGTGAAGAGGCCGGAGCGCCGAATATAGGAACTGTGGACGGTC
GAGCACCAACTTCACGATAATGTGCTGCGTTCGTTCGTGTCTGTACGACA
GGCACGAACACCATTAATTAACTGGGTATGGATTACTGACGCTACGTCTG
CGCCAGTTTTGCGACTCTCTATAAACTGCATGCTTGCACGTACTCTACCT
CTGTGCCATTTTCTTTTGCGGCGATCGTGTTGAGTTCTGGTATCATCATC
CCTTGCGTCCTCACTGTGATCGGATTCGTTCGCGCCGTTTGCAGGCAGTC
AGACAGGAATCCGTCCCTTCCCAACCGCCAAGCCAACGGAGAAGTCCAGA
GTTGGTCACTTGCCCAGGCGAGGCGGCAGAGCACGTGCAAAAACCGATGT
TGCAAGAAGCTGGCTAAGCGAATGATGATGGCTGACCGGCTAGTTTCGGG
TTGGCTTTCAGTGAGGGCACCCTATTCCCGAGAGTCCCCGCTTCAGAAGC
TGCTCAAGCTAGTCCATTGCTATGTATCTTTTTTCGCGCTGGACACAGCG
CAGAGGCGGAGGAGGCTGACGAGCATGATATGGGATTTTGATGTTAGGGG
GGGAGGAGGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13653:1940..4452-

>mRNA_M-pyrifera_M_contig13653.6023.1 ID=mRNA_M-pyrifera_M_contig13653.6023.1|Name=mRNA_M-pyrifera_M_contig13653.6023.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=978bp|location=Sequence derived from alignment at M-pyrifera_M_contig13653:1940..4452- (Macrocystis pyrifera P11B4 male)
TGCGCATCCCGGGGGTCAAGGTCGTGGCGGACAACATCGGCGAAGGTCAT
CTCTCATGCTTCCACGGGAAAGCGATGCGTGCGCATCCCGGGGGTCAAGG
TCGTGGCGGACAACATCGGCGAAGGTCATCTCTCATGCTTCCACGGGAAA
GCGATGCGCGATATGTCTCAGTTGGAGCCAAGGACGCGGTCAACCGGATG
CGGAAGGCCCTGGCCAGCTGTGTCCGACCTTGAATGTTATCCTATCAAGC
GATATGTCTCAGTTGGAGCCAAGGACGCGGTCAACCGGATGCGGAAGGCC
CTGGCCAGCTGTGTCCGACCTTGAATGTTATCCTATCAAGGCAGTCAGAC
AGGAATCCGTCCCTTCCCAACCGCCAAGCCAACGGAGAAGTCCAGAGTTG
GTCACTTGCCCAGGCGAGGCGGCAGAGCACGTGCAAAAACCGATGTTGCA
AGAAGCTGGCTAAGCGAATGATGATGGCTGACCGGCTAGTTTCGGGTTGG
CTTTCAGTGAGGGCACCCTATTCCCGAGAGTCCCCGCTTCAGAAGCTGCT
CAAGCTAGTCCATTGCTATGTATCTTTTTTCGCGCTGGACACAGCGCAGA
GGCGGAGGAGGCTGACGAGCATGATATGGGATTTTGATGTTAGGGGGGGA
GGAGGGTGAGCAGTCAGACAGGAATCCGTCCCTTCCCAACCGCCAAGCCA
ACGGAGAAGTCCAGAGTTGGTCACTTGCCCAGGCGAGGCGGCAGAGCACG
TGCAAAAACCGATGTTGCAAGAAGCTGGCTAAGCGAATGATGATGGCTGA
CCGGCTAGTTTCGGGTTGGCTTTCAGTGAGGGCACCCTATTCCCGAGAGT
CCCCGCTTCAGAAGCTGCTCAAGCTAGTCCATTGCTATGTATCTTTTTTC
GCGCTGGACACAGCGCAGAGGCGGAGGAGGCTGACGAGCATGATATGGGA
TTTTGATGTTAGGGGGGGAGGAGGGTGA
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