mRNA_M-pyrifera_M_contig13652.6022.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13652.6022.1
Unique NamemRNA_M-pyrifera_M_contig13652.6022.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig13652.6022.1 vs. uniprot
Match: D8LEZ3_ECTSI (Vac14_Fig4_bd domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEZ3_ECTSI)

HSP 1 Score: 173 bits (438), Expect = 1.290e-48
Identity = 87/96 (90.62%), Postives = 92/96 (95.83%), Query Frame = 1 
Query:    1 MAEDSAIGTPAESPLAPAILRGLGDRSYEKRKNAALEIEALIKTLEDNNETDRICSIIVLLGQDFATSTNAHHRKGGLIGLAATAIGLMSVGVIYL 288
            MAEDS++GTPAESPLAPAILRGLGDRSY+KRKNAALEIEALIKTLEDNNETDRICSIIVLLGQDFATSTN +HRKGGLIGLAATAIGLMS   +YL
Sbjct:    1 MAEDSSVGTPAESPLAPAILRGLGDRSYDKRKNAALEIEALIKTLEDNNETDRICSIIVLLGQDFATSTNPNHRKGGLIGLAATAIGLMSATKLYL 96
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BLAST of mRNA_M-pyrifera_M_contig13652.6022.1 vs. uniprot
Match: A0A7S2F296_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F296_9STRA)

HSP 1 Score: 145 bits (366), Expect = 6.200e-43
Identity = 72/93 (77.42%), Postives = 81/93 (87.10%), Query Frame = 1 
Query:   10 DSAIGTPAESPLAPAILRGLGDRSYEKRKNAALEIEALIKTLEDNNETDRICSIIVLLGQDFATSTNAHHRKGGLIGLAATAIGLMSVGVIYL 288
            D  +  PAESPL PAILR LGDRSY+KRKNAALEIEALIK L++NN+TDRICS+I +LGQDFATSTNA+HRKGGLIGLAATAIGLM    +YL
Sbjct:   13 DVVLTAPAESPLPPAILRSLGDRSYDKRKNAALEIEALIKALQENNDTDRICSVIAMLGQDFATSTNANHRKGGLIGLAATAIGLMQDIHLYL 105
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BLAST of mRNA_M-pyrifera_M_contig13652.6022.1 vs. uniprot
Match: F0YGU5_AURAN (Uncharacterized protein n=2 Tax=Ochrophyta TaxID=2696291 RepID=F0YGU5_AURAN)

HSP 1 Score: 145 bits (365), Expect = 4.570e-41
Identity = 71/91 (78.02%), Postives = 82/91 (90.11%), Query Frame = 1 
Query:   16 AIGTPAESPLAPAILRGLGDRSYEKRKNAALEIEALIKTLEDNNETDRICSIIVLLGQDFATSTNAHHRKGGLIGLAATAIGLMSVGVIYL 288
            A+ +P+ESPL PAILR LGDRSY+KRKNAALEIEALIK L++NN+TDRICS+I +LGQDFATSTNA+HRKGGLIGLAATAIGLM    +YL
Sbjct:    8 ALSSPSESPLPPAILRSLGDRSYDKRKNAALEIEALIKALQENNDTDRICSVIAMLGQDFATSTNANHRKGGLIGLAATAIGLMHDIRLYL 98
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BLAST of mRNA_M-pyrifera_M_contig13652.6022.1 vs. uniprot
Match: A0A835YJ67_9STRA (Vacuolar protein 14 C-terminal Fig4p binding-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ67_9STRA)

HSP 1 Score: 146 bits (368), Expect = 5.990e-39
Identity = 73/98 (74.49%), Postives = 88/98 (89.80%), Query Frame = 1 
Query:    1 MAEDSAIG--TPAESPLAPAILRGLGDRSYEKRKNAALEIEALIKTLEDNNETDRICSIIVLLGQDFATSTNAHHRKGGLIGLAATAIGLMSVGVIYL 288
            +A+D ++    PAESPLAPAILRGLGDRSY+KRKNAALEIEA++++L+++ +TDRICSII LLGQDFATSTNA+HRKGGLIGLAATAIGLMS   +YL
Sbjct:    3 LADDVSLAGAAPAESPLAPAILRGLGDRSYDKRKNAALEIEAVVRSLQESRDTDRICSIIALLGQDFATSTNANHRKGGLIGLAATAIGLMSSTKLYL 100
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BLAST of mRNA_M-pyrifera_M_contig13652.6022.1 vs. uniprot
Match: F0YIP2_AURAN (Vac14_Fig4_bd domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YIP2_AURAN)

HSP 1 Score: 144 bits (363), Expect = 3.640e-38
Identity = 70/90 (77.78%), Postives = 80/90 (88.89%), Query Frame = 1 
Query:   19 IGTPAESPLAPAILRGLGDRSYEKRKNAALEIEALIKTLEDNNETDRICSIIVLLGQDFATSTNAHHRKGGLIGLAATAIGLMSVGVIYL 288
            +  P+ESPL PAILR LGDRSY+KRKNAALEIEALIK L++NN+TDRICS+I +LGQDFATSTNA+HRKGGLIGLAATAIGLM    +YL
Sbjct:    9 VSAPSESPLPPAILRSLGDRSYDKRKNAALEIEALIKALQENNDTDRICSVIAMLGQDFATSTNANHRKGGLIGLAATAIGLMQDIRLYL 98
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BLAST of mRNA_M-pyrifera_M_contig13652.6022.1 vs. uniprot
Match: A0A8J2SHG9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SHG9_9STRA)

HSP 1 Score: 140 bits (352), Expect = 1.210e-36
Identity = 69/87 (79.31%), Postives = 77/87 (88.51%), Query Frame = 1 
Query:   28 PAESPLAPAILRGLGDRSYEKRKNAALEIEALIKTLEDNNETDRICSIIVLLGQDFATSTNAHHRKGGLIGLAATAIGLMSVGVIYL 288
            PAESPL PAILR LGDRSY+KRKNAALEIEAL+KTL+  ++TDRICS+I LLGQDFATSTN +HRKGGLIGLAATAIGLM    +YL
Sbjct:    6 PAESPLPPAILRSLGDRSYDKRKNAALEIEALVKTLQQKSDTDRICSVIALLGQDFATSTNTNHRKGGLIGLAATAIGLMPDIFLYL 92
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BLAST of mRNA_M-pyrifera_M_contig13652.6022.1 vs. uniprot
Match: A0A7S3NMZ6_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NMZ6_9STRA)

HSP 1 Score: 140 bits (353), Expect = 1.220e-36
Identity = 69/86 (80.23%), Postives = 79/86 (91.86%), Query Frame = 1 
Query:   31 AESPLAPAILRGLGDRSYEKRKNAALEIEALIKTLEDNNETDRICSIIVLLGQDFATSTNAHHRKGGLIGLAATAIGLMSVGVIYL 288
            +ESPL PAILR LGDRSY+KRKNAALEIEALIK+L++N +TDRICS+I +LGQDFATSTNA+HRKGGLIGLAATAIGLMS   +YL
Sbjct:   32 SESPLPPAILRSLGDRSYDKRKNAALEIEALIKSLQENTDTDRICSVIAMLGQDFATSTNANHRKGGLIGLAATAIGLMSDISLYL 117
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BLAST of mRNA_M-pyrifera_M_contig13652.6022.1 vs. uniprot
Match: A0A7S3XZQ6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZQ6_HETAK)

HSP 1 Score: 130 bits (328), Expect = 6.700e-34
Identity = 63/94 (67.02%), Postives = 77/94 (81.91%), Query Frame = 1 
Query:    7 EDSAIGTPAESPLAPAILRGLGDRSYEKRKNAALEIEALIKTLEDNNETDRICSIIVLLGQDFATSTNAHHRKGGLIGLAATAIGLMSVGVIYL 288
            ED +   PAESPL+P ILRGL DRSY+KRKNAA EI  L+K L+++N+TDR+CSI+ +LGQDFATSTN++HRKGGLIGLA  AIGLM    +YL
Sbjct:    4 EDISGSGPAESPLSPGILRGLSDRSYDKRKNAAGEIVELVKHLQEDNDTDRVCSIVAMLGQDFATSTNSNHRKGGLIGLAGCAIGLMGATKLYL 97
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BLAST of mRNA_M-pyrifera_M_contig13652.6022.1 vs. uniprot
Match: W7TIC2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIC2_9STRA)

HSP 1 Score: 103 bits (258), Expect = 3.250e-26
Identity = 51/87 (58.62%), Postives = 65/87 (74.71%), Query Frame = 1 
Query:   34 ESPLAPAILRGLGDRSYEKRKNAALEIEALIKTLEDNNETDRICSIIVLLGQDFATSTNAHHRKGGLIGLAATAIGLMSVGVIYLTP 294
            E P+ P I+RGLGDRSYEKRKNAAL++E  +K L + N+  R+ + + LLGQ+F TSTN++HRKGGLI LAA AIGLM    + L P
Sbjct:   77 EPPIPPHIIRGLGDRSYEKRKNAALDLEQHVKYLTERNDKTRLQATLHLLGQEFCTSTNSNHRKGGLIALAAAAIGLMGSIEVLLYP 163
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BLAST of mRNA_M-pyrifera_M_contig13652.6022.1 vs. uniprot
Match: A0A7S4HSB2_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HSB2_9STRA)

HSP 1 Score: 110 bits (275), Expect = 4.110e-26
Identity = 54/85 (63.53%), Postives = 69/85 (81.18%), Query Frame = 1 
Query:   34 ESPLAPAILRGLGDRSYEKRKNAALEIEALIKTLEDNNETDRICSIIVLLGQDFATSTNAHHRKGGLIGLAATAIGLMSVGVIYL 288
            ESPL PA+ R LGDR+Y+KRKNAALEIEAL+K+L++ N T  I S++ +L +DF TS NA++RKGGLIG+AATAIGLM    +YL
Sbjct:   91 ESPLPPAVQRCLGDRAYDKRKNAALEIEALVKSLQETNNTAMIHSVLAVLSKDFCTSMNANYRKGGLIGIAATAIGLMGGTRMYL 175
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13652.6022.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEZ3_ECTSI1.290e-4890.63Vac14_Fig4_bd domain-containing protein n=2 Tax=Ec... [more]
A0A7S2F296_9STRA6.200e-4377.42Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
F0YGU5_AURAN4.570e-4178.02Uncharacterized protein n=2 Tax=Ochrophyta TaxID=2... [more]
A0A835YJ67_9STRA5.990e-3974.49Vacuolar protein 14 C-terminal Fig4p binding-domai... [more]
F0YIP2_AURAN3.640e-3877.78Vac14_Fig4_bd domain-containing protein (Fragment)... [more]
A0A8J2SHG9_9STRA1.210e-3679.31Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3NMZ6_9STRA1.220e-3680.23Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S3XZQ6_HETAK6.700e-3467.02Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
W7TIC2_9STRA3.250e-2658.62Uncharacterized protein (Fragment) n=1 Tax=Nannoch... [more]
A0A7S4HSB2_9STRA4.110e-2663.53Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13652contigM-pyrifera_M_contig13652:664..957 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score173.3
Seed ortholog evalue5.5e-41
Seed eggNOG ortholog2880.D8LEZ3
Preferred nameVAC14
KEGG koko:K10875,ko:K15305
KEGG Pathwayko03440,ko05166,ko05203,map03440,map05166,map05203
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0000306,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005770,GO:0005773,GO:0005774,GO:0005794,GO:0005942,GO:0006629,GO:0006644,GO:0006650,GO:0006661,GO:0006793,GO:0006796,GO:0006950,GO:0006970,GO:0007154,GO:0007165,GO:0007267,GO:0008047,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009628,GO:0009893,GO:0009987,GO:0010008,GO:0010562,GO:0012505,GO:0016020,GO:0019207,GO:0019209,GO:0019220,GO:0019222,GO:0019637,GO:0019898,GO:0023052,GO:0030154,GO:0030234,GO:0030674,GO:0031090,GO:0031312,GO:0031323,GO:0031325,GO:0031410,GO:0031901,GO:0031902,GO:0031982,GO:0031984,GO:0032502,GO:0032991,GO:0033674,GO:0035032,GO:0038023,GO:0042325,GO:0042327,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043549,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0045165,GO:0045168,GO:0045937,GO:0046331,GO:0046474,GO:0046486,GO:0046488,GO:0048518,GO:0048522,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051174,GO:0051338,GO:0051347,GO:0051716,GO:0060089,GO:0060090,GO:0061695,GO:0065007,GO:0065009,GO:0070772,GO:0071704,GO:0090407,GO:0097708,GO:0098588,GO:0098772,GO:0098791,GO:0098796,GO:0098805,GO:0098852,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.phosphatidylinositol biosynthetic process
EggNOG OGsKOG0212@1,KOG0212@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Exons1
Model size294
Cds size294
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815822.1937249-CDS-M-pyrifera_M_contig13652:663..9571622815822.1937249-CDS-M-pyrifera_M_contig13652:663..957Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13652 664..957 -
1692277588.828478-CDS-M-pyrifera_M_contig13652:663..9571692277588.828478-CDS-M-pyrifera_M_contig13652:663..957Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13652 664..957 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13652.6022.1prot_M-pyrifera_M_contig13652.6022.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13652 664..957 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13652.6022.1

>prot_M-pyrifera_M_contig13652.6022.1 ID=prot_M-pyrifera_M_contig13652.6022.1|Name=mRNA_M-pyrifera_M_contig13652.6022.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=98bp
MAEDSAIGTPAESPLAPAILRGLGDRSYEKRKNAALEIEALIKTLEDNNE
TDRICSIIVLLGQDFATSTNAHHRKGGLIGLAATAIGLMSVGVIYLTP
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mRNA from alignment at M-pyrifera_M_contig13652:664..957-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13652.6022.1 ID=mRNA_M-pyrifera_M_contig13652.6022.1|Name=mRNA_M-pyrifera_M_contig13652.6022.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=294bp|location=Sequence derived from alignment at M-pyrifera_M_contig13652:664..957- (Macrocystis pyrifera P11B4 male)
ATGGCCGAAGACTCGGCCATAGGGACTCCAGCAGAGTCACCGTTGGCACC
GGCAATCCTGCGTGGGCTTGGCGACCGGTCTTACGAGAAAAGGAAGAATG
CCGCGCTCGAGATAGAGGCCTTGATCAAGACGTTGGAGGACAACAACGAG
ACAGACCGTATTTGCTCCATCATCGTCCTACTCGGGCAGGACTTTGCCAC
CTCTACGAATGCTCACCACCGCAAGGGTGGGCTCATTGGTCTTGCGGCAA
CTGCTATCGGGCTAATGTCGGTGGGTGTGATATATTTAACGCCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13652:664..957-

>mRNA_M-pyrifera_M_contig13652.6022.1 ID=mRNA_M-pyrifera_M_contig13652.6022.1|Name=mRNA_M-pyrifera_M_contig13652.6022.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=588bp|location=Sequence derived from alignment at M-pyrifera_M_contig13652:664..957- (Macrocystis pyrifera P11B4 male)
ATGGCCGAAGACTCGGCCATAGGGACTCCAGCAGAGTCACCGTTGGCACC
GGCAATCCTGCGTGGGCTTGGCGACCGGTCTTACGAGAAAAGGAAGAATG
CCGCGCTCGAGATAGAGGCCTTGATCAAGACGTTGGAGGACAACAACGAG
ACAGACCGTATTTGCTCCATCATCGTCCTACTCGGGCAGGACTTTGCCAC
CTCTACGAATGCTCACCACCGCAAGGGTGGGCTCATTGGTCTTGCGGCAA
CTGCTATCGGGCTAATGTCGGTGGGTGTGATATATTTAACGCCTATGGCC
GAAGACTCGGCCATAGGGACTCCAGCAGAGTCACCGTTGGCACCGGCAAT
CCTGCGTGGGCTTGGCGACCGGTCTTACGAGAAAAGGAAGAATGCCGCGC
TCGAGATAGAGGCCTTGATCAAGACGTTGGAGGACAACAACGAGACAGAC
CGTATTTGCTCCATCATCGTCCTACTCGGGCAGGACTTTGCCACCTCTAC
GAATGCTCACCACCGCAAGGGTGGGCTCATTGGTCTTGCGGCAACTGCTA
TCGGGCTAATGTCGGTGGGTGTGATATATTTAACGCCT
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