mRNA_M-pyrifera_M_contig13646.6021.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13646.6021.1
Unique NamemRNA_M-pyrifera_M_contig13646.6021.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig13646.6021.1 vs. uniprot
Match: A0A6H5JWC3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JWC3_9PHAE)

HSP 1 Score: 343 bits (881), Expect = 1.380e-113
Identity = 179/246 (72.76%), Postives = 206/246 (83.74%), Query Frame = 1
Query:    1 QVGAVPSTVTTADIEQLASQFSSKEQEAVVNATAVMGFLNRFMDASGMTLEMEAIETSLAKLAPSGWTPGVAYDKKADQELMEEDRIEAQKRTERTKKSGFFSYLKMIFGAKWADSKSLGKIPSSDQAIFDRCKKDAGFVPYFIRKMQHSAAKRAFAFGFLLRINQGSDEVPVTLKQLMIYQCAINAGNTILRAHYAFLAMRSGVSLERLVQIADETSTGGGASAAEDAAMAFAQAARYALVRVVA 738
            +VGAVPSTVTTADIE LA+ F+ KEQEAVVNA  +MGFLNRFMDASGMTLEMEAIETSL KLAPSGW P  AYDK AD ELM+EDR EA KR +R K SGFF ++KMIFG K AD++SL KIP+SD A+F +CKKD GFVPY+IR+MQH+ AK+A +FGFLLR+ QGSDEVPV LKQLM YQCA NA N +LRAH+AF+AMRSGV+L RL+Q+ D TSTGGG SAAEDAAMAFAQAA +   R+ A
Sbjct:  173 KVGAVPSTVTTADIEMLATTFTRKEQEAVVNACTIMGFLNRFMDASGMTLEMEAIETSLQKLAPSGWVPNDAYDKDADVELMKEDREEAVKREKRKKSSGFFGFVKMIFGGKMADNRSLKKIPTSDSALFSQCKKDGGFVPYYIRQMQHANAKKALSFGFLLRLCQGSDEVPVQLKQLMAYQCATNAENNVLRAHFAFMAMRSGVTLSRLIQVTDITSTGGGDSAAEDAAMAFAQAASWTPTRMTA 418          
BLAST of mRNA_M-pyrifera_M_contig13646.6021.1 vs. uniprot
Match: D7FMN7_ECTSI (Probable fusion protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMN7_ECTSI)

HSP 1 Score: 242 bits (618), Expect = 6.770e-75
Identity = 130/247 (52.63%), Postives = 168/247 (68.02%), Query Frame = 1
Query:    1 QVGAVPSTVTTADIEQLASQFSSKEQEAVVNATAVMGFLNRFMDASGMTLEMEAIETSLAKLAPSGWTPGVAYDKKADQELMEEDRIEAQKRTERTKKSGFFSYLKMIFGAKWADSKSLGKIPSSDQAIFDRCKKDAGFVPYFIRKMQHSAAKRAFAFGFLLRINQGSDEVPVTLKQLMIYQCAINAGNTILRAHYAFLAMRSGVSLERLVQIADETSTGGGASAAEDAAMAFAQAARYALVRVVAG 741
            ++G VPS VT  DI  +AS ++ KEQE V+N+  VMGFLNRFMD  GMTLEME +E  + +LAP+GW  G +YD +AD ELM EDR+EA KR ER  KS F SY+KMI GAK AD  SL   P+++Q +  +C + AGFVPY++ +M+HS A+ AF + F LR+ QGS+EVP  LKQLM Y CA NAGNTILRAHYAF+A R+G+ +    Q+A  T+T    + A D  +   Q A  AL    +G
Sbjct:   89 KLGPVPSRVTADDIRDMASVYTEKEQEGVINSGVVMGFLNRFMDTIGMTLEMEPLEMGMEQLAPTGWEHGHSYDPEADAELMAEDRVEAVKRAERKSKSNFLSYIKMIIGAKLADRASLKNTPTAEQLVAQKCMELAGFVPYYLVQMKHSQARNAFVWAFTLRLCQGSEEVPAQLKQLMCYICATNAGNTILRAHYAFMAHRNGMPIR---QLATATNTDSSEAVAADDTIDAKQVAAMALAEACSG 332          
BLAST of mRNA_M-pyrifera_M_contig13646.6021.1 vs. uniprot
Match: A0A6H5JXG8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXG8_9PHAE)

HSP 1 Score: 191 bits (484), Expect = 3.980e-55
Identity = 118/261 (45.21%), Postives = 164/261 (62.84%), Query Frame = 1
Query:    1 QVGAVPSTVTTADIEQLASQFSSKEQEAVVNATAVMGFLNRFM------------DAS-----GMTLEMEAIETSLAKLAPSGWTPGVAYDKKADQELMEEDRIEAQKRTERTKKS-GFFSYLKMIFGAKWADSKSLGKIPSSDQAIFDRCKKDAGFVPYFI---RKMQHSAAKRAFAFGFLLRINQGSDEVPVTLKQLMIYQCAINAGNTILRAHYAFLAMRSGVSLERLVQIADETSTGGGASAAED----AAMAFAQA 708
            ++GAVP+ VT+ DI+ +A   +S+EQE V+NA  +MGFLNRFM            D S     GMTLE+E +ET    LA SGWT G+++D + D+ELMEEDR  A++R ER K++ G F++LKM+ GAK ADS SL   P+S++ +   C + AGF PY++    K + + A+ A  + F  R+ QGS+EVP   KQ M Y  A +A NTILRAH+AF+A R+GVS+  L   A  T+ GG     ED    AA++ A+A
Sbjct:   93 KLGAVPNEVTSDDIQSMARALTSEEQECVINAMVLMGFLNRFMLMMTNDCFCSRMDESPRGTFGMTLELEPLETGNKHLAESGWTAGISFDPEGDEELMEEDRAMAERREERKKQACGGFTFLKMLVGAKMADSASLKGTPTSEKNVKQLCTERAGFAPYYLVGEEKSKMANARNALVWAFTRRLCQGSEEVPAATKQTMGYMLATSADNTILRAHFAFMAHRNGVSVSNL---ASATAEGGDTDGGEDLKKAAALSMARA 350          
BLAST of mRNA_M-pyrifera_M_contig13646.6021.1 vs. uniprot
Match: A0A0C2D7D5_9DELT (Uncharacterized protein n=1 Tax=Enhygromyxa salina TaxID=215803 RepID=A0A0C2D7D5_9DELT)

HSP 1 Score: 103 bits (257), Expect = 8.110e-22
Identity = 68/195 (34.87%), Postives = 99/195 (50.77%), Query Frame = 1
Query:   49 LASQFSSKEQEAVVNATAVMGFLNRFMDASGMTLEMEAIETSLAKLAPSGWTPGVAYDKKADQELMEEDRIEAQKRTERTKKSGFFSYLKMIFGAKWADSKSLGKIPSSDQAIFDRCKKDAGFVPYFIRKMQHSAAKRAFAFGFLLRINQGSDEVPVTLKQLMIYQCAINAGNTILRAHYAFLAMRSGVSLERLV 633
            LA+ FS +++E++V A  +MGFLN  MD  G+ LE   +  S A LA S WTP   YD++ D+EL     +EA  +T+     G     + I G       SL  I      I+ + +   GFVP +I  +   AAKR FA   + R++       + LK  M +  A    N +L AH+AF AMRSG ++  L+
Sbjct:  168 LATHFSERDEESIVLAATLMGFLNCAMDTLGVVLEQRLLTQSQAHLAASAWTPNKNYDERYDREL-----VEADAQTDDGDTLGPIELAQTIAGVINYSRTSLSSIEKRADKIYAQVEAALGFVPSYILNVDRIAAKRVFAHVLIERLHTMQGPTAMWLKYAMGFVAARACNNQLLAAHFAFGAMRSGANVGMLL 357          
BLAST of mRNA_M-pyrifera_M_contig13646.6021.1 vs. uniprot
Match: A0A2S9YSM1_9DELT (Uncharacterized protein n=1 Tax=Enhygromyxa salina TaxID=215803 RepID=A0A2S9YSM1_9DELT)

HSP 1 Score: 96.3 bits (238), Expect = 3.180e-19
Identity = 67/209 (32.06%), Postives = 103/209 (49.28%), Query Frame = 1
Query:    4 VGAVPSTVTTADIEQLASQFSSKEQEAVVNATAVMGFLNRFMDASGMTLEMEAIETSLAKLAPSGWTPGVAYDKKADQELMEEDRIEAQKRTERTKKSGFFSYLKMIFGAKWADSKSLGKIPSSDQAIFDRCKKDAGFVPYFIRKMQHSAAKRAFAFGFLLRINQGSDEVPVTLKQLMIYQCAINAGNTILRAHYAFLAMRSGVSLERL 630
            V  +P+ VT      LA  FS +++E+VV A  +MGFLN  +D  G+ LE   +  S A LA S WTP   YD++ D+E+     +EA   T+  +        + I G       SL  I      I+ + +   GFVP ++ ++  + AKR  A   + R++       + LK  M +  A  + N +L AHYA+ AMRSG ++  L
Sbjct:  153 VAQMPTEVTLDHRLALARHFSERDEESVVLAATLMGFLNCAVDTLGVVLEQRLLTQSQAHLAASAWTPSKNYDERYDREV-----VEADAETDDGETLNPLELAQTIAGVIGYSRASLSTIEKRPDKIYAQVEAALGFVPSYLLRISRTPAKRVLAHLLIERLHTMQGPTGMWLKYAMGFVAAKASHNELLAAHYAYGAMRSGANVGML 356          
BLAST of mRNA_M-pyrifera_M_contig13646.6021.1 vs. uniprot
Match: A0A7S1TD96_9RHOD (Hypothetical protein n=2 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TD96_9RHOD)

HSP 1 Score: 79.3 bits (194), Expect = 2.700e-13
Identity = 64/216 (29.63%), Postives = 105/216 (48.61%), Query Frame = 1
Query:    4 VGAVPSTVTTADIEQLASQFSSKEQEAVVNATAVMGFLNRFMDASGMTLEMEAIETSLAKLAPSG-------WTPGVAYDKKADQELMEEDRIEAQKRTE-RTKKSGFFSYLK---MIFGAKWADSKSLGKIPSSDQAIFDRCKKDAGFVPYFIRKMQHSAAKRAFAFGFLLRIN-QGSDEVPVTLKQLMIYQCAINAGNTILRAHYAFLAMRSGV 615
            +G VP+ VT  D  +LA  FS   +E V+  ++VM  + RF D  G+ LE++ +  +   L P         W PG  Y    D + +E +  +A +  +   KK G    LK   M+  +   D K+   IP     +    K++ GF PY++ +++    +RA A   +  +N + S ++PV LK    Y  A    + ILRAH+ +LA+ SG+
Sbjct:  177 LGQVPTKVTLDDRLRLARVFSRAHEETVILMSSVMALMIRFTDTFGVPLELKTLLLAEQYLQPDDEEVDGLRWNPG-KYISPWDSDRLERELAQALEAGDLERKKEGIRERLKVFGMLARSGLGDEKAKTGIPLMKGRLSVVMKRELGFCPYYLERIRFLFPRRAIAATLVHYLNVESSPQLPVELKYATCYLMANKLNSEILRAHFGYLAIASGM 391          
BLAST of mRNA_M-pyrifera_M_contig13646.6021.1 vs. uniprot
Match: D7G5G2_ECTSI (Probable fusion protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5G2_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 1.330e-9
Identity = 39/87 (44.83%), Postives = 53/87 (60.92%), Query Frame = 1
Query:  130 DASGMTLEMEAIETSLAKLAPSGWTPGVAYDKKADQELMEEDRIEAQKRTERTKKS--GFFSYLKMIFGAKWADSKSLGKIPSSDQA 384
            D  GMTLE+E +ET    LA SGWT G+++D + D+ELMEEDR+ A++R ER K++  GF S    I  A +A       +  SD A
Sbjct:   44 DTLGMTLELEPLETGNEHLAESGWTAGISFDPEGDEELMEEDRVMAERREERKKQACGGFTSADNTILRAHFAFMAHRNGVSVSDLA 130          
BLAST of mRNA_M-pyrifera_M_contig13646.6021.1 vs. uniprot
Match: A0A504J111_9FLAO (Uncharacterized protein n=1 Tax=Aquimarina algicola TaxID=2589995 RepID=A0A504J111_9FLAO)

HSP 1 Score: 57.8 bits (138), Expect = 4.700e-6
Identity = 38/181 (20.99%), Postives = 86/181 (47.51%), Query Frame = 1
Query:    4 VGAVPSTVTTADIEQLASQFSSKEQEAVVNATAVMGFLNRFMDASGMTLEMEAIETSLAKLAPSGWTPGVAYDKKADQELMEEDRIEAQKRTERTKKSGFFSYLKMIF---GAKWADSKSLGKIPSSDQAIFDRCKKDAGFVPYFIRKMQHSAAKRAFAFGFLLRINQGSDEVPVTLKQLM 537
            + ++P T+T           S+KE E +V +  +MGFLN+FMDA+G+T+E  +++     L+  GW PG  ++   D   ++   I         ++  F ++L+++    G  + + K    +P S        +K  G+    ++ +++    +A      + +++ + ++ + +K L+
Sbjct:  132 LSSIPVTLTKERYNDFRKHLSAKEIERIVYSIGLMGFLNKFMDATGITIEQNSLQDVGKLLSSDGWQPGKHFEGSFDASEIQSKPI---------RQDSFMTFLRVLKHAPGVVFLEKKWTRGVPGSYARAKVYLQKHTGYTFPILKNIKNRKILKAITTVIKINLDKETTQLGLRVKYLL 303          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13646.6021.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JWC3_9PHAE1.380e-11372.76Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FMN7_ECTSI6.770e-7552.63Probable fusion protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JXG8_9PHAE3.980e-5545.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0C2D7D5_9DELT8.110e-2234.87Uncharacterized protein n=1 Tax=Enhygromyxa salina... [more]
A0A2S9YSM1_9DELT3.180e-1932.06Uncharacterized protein n=1 Tax=Enhygromyxa salina... [more]
A0A7S1TD96_9RHOD2.700e-1329.63Hypothetical protein n=2 Tax=Compsopogon caeruleus... [more]
D7G5G2_ECTSI1.330e-944.83Probable fusion protein n=1 Tax=Ectocarpus silicul... [more]
A0A504J111_9FLAO4.700e-620.99Uncharacterized protein n=1 Tax=Aquimarina algicol... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13646contigM-pyrifera_M_contig13646:1602..8624 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score84.7
Seed ortholog evalue6.5e-14
Seed eggNOG ortholog391625.PPSIR1_29453
Hectar predicted targeting categoryother localisation
EggNOG free text desc.hydroperoxide reductase activity
EggNOG OGsCOG2128@1,COG2128@2
COG Functional cat.S
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons4
Model size744
Cds size744
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13646.6021.1prot_M-pyrifera_M_contig13646.6021.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13646 1602..8624 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815822.118598-CDS-M-pyrifera_M_contig13646:1601..17291622815822.118598-CDS-M-pyrifera_M_contig13646:1601..1729Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13646 1602..1729 +
1692277588.7833858-CDS-M-pyrifera_M_contig13646:1601..17291692277588.7833858-CDS-M-pyrifera_M_contig13646:1601..1729Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13646 1602..1729 +
1622815822.13499-CDS-M-pyrifera_M_contig13646:5133..53151622815822.13499-CDS-M-pyrifera_M_contig13646:5133..5315Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13646 5134..5315 +
1692277588.7990425-CDS-M-pyrifera_M_contig13646:5133..53151692277588.7990425-CDS-M-pyrifera_M_contig13646:5133..5315Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13646 5134..5315 +
1622815822.1482801-CDS-M-pyrifera_M_contig13646:7459..76801622815822.1482801-CDS-M-pyrifera_M_contig13646:7459..7680Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13646 7460..7680 +
1692277588.8100972-CDS-M-pyrifera_M_contig13646:7459..76801692277588.8100972-CDS-M-pyrifera_M_contig13646:7459..7680Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13646 7460..7680 +
1622815822.1592615-CDS-M-pyrifera_M_contig13646:8411..86241622815822.1592615-CDS-M-pyrifera_M_contig13646:8411..8624Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13646 8412..8624 +
1692277588.8197215-CDS-M-pyrifera_M_contig13646:8411..86241692277588.8197215-CDS-M-pyrifera_M_contig13646:8411..8624Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13646 8412..8624 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13646.6021.1

>prot_M-pyrifera_M_contig13646.6021.1 ID=prot_M-pyrifera_M_contig13646.6021.1|Name=mRNA_M-pyrifera_M_contig13646.6021.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=248bp
QVGAVPSTVTTADIEQLASQFSSKEQEAVVNATAVMGFLNRFMDASGMTL
EMEAIETSLAKLAPSGWTPGVAYDKKADQELMEEDRIEAQKRTERTKKSG
FFSYLKMIFGAKWADSKSLGKIPSSDQAIFDRCKKDAGFVPYFIRKMQHS
AAKRAFAFGFLLRINQGSDEVPVTLKQLMIYQCAINAGNTILRAHYAFLA
MRSGVSLERLVQIADETSTGGGASAAEDAAMAFAQAARYALVRVVAG*
back to top

mRNA from alignment at M-pyrifera_M_contig13646:1602..8624+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13646.6021.1 ID=mRNA_M-pyrifera_M_contig13646.6021.1|Name=mRNA_M-pyrifera_M_contig13646.6021.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=7023bp|location=Sequence derived from alignment at M-pyrifera_M_contig13646:1602..8624+ (Macrocystis pyrifera P11B4 male)
CAGGTCGGAGCGGTGCCTTCGACGGTTACGACCGCGGACATCGAGCAGCT CGCGTCGCAGTTCTCGTCAAAGGAGCAGGAGGCGGTCGTCAACGCGACCG CGGTGATGGGTTTCCTCAACCGATTCATGTGAGAGGCTTTTTTGGCATGC TTTTGTTAGCAGTGGCTCGGACAGATCACCTCCCGTTTTTGTTGGTGATA CAACATACTTGAGAAGGGAGACACATTTCGTTATATTTTATGATCCGTAT GATATCTATGATATGCATGGTGTGTATGATATCTATGATCTGTCTGGTGT GTCTAATATATGTATGATATGTATTTGATAGGTATGATCTGTATTTGATA GGTATGATATGTATGATACGTATGATATGTATGATACGTATGATATGTAT TGATAGGTATGATATGTATGATACGTATGATATGTATGATATGCATGGTG TGTATGATCTGTCTGGTGTGTGTGATATGTATGATCTGTATTTGATAGGT ATGATCTGTATTTGATAGGTATGATCTGTATGATAGGTATGATATGTATG ATAGGTATGATATGTATGATACGTATGATATGTATTTGATAGGTATGATA TGTATTTGATAGGTATGATATTTATTGATAGGTATGATATGTATGATACG TATGATATGTATGATACGTATGATATGTATGATACGTATGATATGTATGA TACGTATGATATGTATGATACGTATGATATGTATGATATGCATGATATGT ATGATGCGTATTATCTAGCTTTTTGTGGTGGGTGGAAAGTCGTGCGCTTT TTTCGCACGATGATACAAGTATAGGGCACGTTTGGTGCGTTGGAGCTGTT GCACTATGCAGACCATGCAGAACATCTCCGTAGCGTCCGGTTAGGCCGGT TAGGCCGGTTAGGCCGGTTAGGCCGTGTAGATTATATATCAGGTGATCTA CACAGGTATATCGTGACCCGCCTGTCCGACTTGCGAAGAAATGGCGCATA GTCGAACACCAAAGCGTTTTGGGTTTGTTGTAAGAGGACGGGAAGGGTGC AGGGAAGATGACGCCTTTGTTTTTGTGAATTAGGTTAGGGAGGTATGGAA AGGTGGGTGGATGGAGGGTGGGGACGTGGAGTGAATGGGAATGGGGGAAG GGGACGGGTGAAGGGGGGGGGGGGGGGGGCGGGGCGCCAGGCAGGGCCCG CGCGCGGGGCACAAAGCCCCCCCCCGCACCCACCCGCGCGGCGGCGNNNN NNNNNNGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGA GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTA CTGGTGTCATGCATGACCGTAGTCGTATGGCTAAAGACCCTCGCATCCGT ACAACGTCGGGACGGAGCACGTTGGGTTTTGACTGACCGCTTGGGGAAAG CGAGAAGAAAGGATGGGAGAGAAGAAAGGAGGAGGCAAGCACGTGTAGTC GTGCTTGTTCCTGTTCGAAAAGACTGAAGGGGGCGAGCGGGGAAAAAAGG GGGGGGTGTTGAGCGAGGTGGGGGCGGGTAGGAAGGGCGAAGACGAGGGG GAAGATGTGAAGGAGGGATGGGTGCGAGAATGGCGATAGGGCAATAAGAG AGGGGGACGGTGAGATAGCGGATGGGCGGGAGGGATGGAGGCAAACTAGA GGGAGAGGGGGGGGGACGGGGGGGGGGGCGAGTGGTGGACGGGAGGGAGG GAGAGGAGGGGGGGAGGGACGGAGGGACGGAGGGGGTCGCGCTTCTCATG ATGTGGTGGGATAGTGATATTGAGCGCAGGATAGGTTTTTGACAAGAGGG CGGGACAGTGAAGTTCACTTGCTTTGTTCTGGTATGCGGTGTTTTCTTGT TTTTATTTTTTCACCGTAAGTTGTGTTGCGTACTTTACGCAGCAATGGGG GGAAAACTCGTACCCGCTTTTACGAGTCTCACCGCGTGGAAGATTGAACG GAGGAGATCTGGGGTTTGCGGAGAGGTGCTTGAAAGGAGCATGCTTGAAA GGAGGGACGGACAAGAGGGCCATAAAGTTGACGCCGGGTGCAGCTGGTTG AACTATCATTAATCATTACGGGGGAGCCATGGTACATAGGACGAAATATT ACTAGCAAAAATAGGTAAATATATCGGGTTTTGTGTGTACCGTGGGTCCT ATTCACTACCAGGTATGATCCCCCGTAATAATAAGAAGACAAGTTGGGAA GGGTTCAGATAGAAAGGAAGAAGACCATCCGCAGTAAGGGGCTTTACTCG TGGGCGTGGGCGAGCAGGGGTCTGGCACTGGGTAGGAGAGGTCGGCGAGT TGGAATTTCAGAGTCATGAGCGAAACAAATTGGAACTTGGAACTACTGCT GTACAGCAGAGGAGGTTGGTATTTTCAATATTGATAGCAGCGGCAGGAAT AAAACAGCGGTAGTTTTTGGCCGCATGATTTTCAAGTCTTGTTTTGGACC TGCGTACCGGTGCTACTGAAATTCGAGTTCATTTTTTTTTTTTTTTTACA GGTCCGTGAACTTTTACAGCAGTTTGATTACCGTGTCAAACGTGGACTGT CTTTCCAACTCAACAGGTGTGATATTAGTTAGGTAACGTGGCGTGCGTGC GTGCGTGTTTTTCTTTTTTTTTTTTTTTTAATTTTTTTCACCTAAGTAAG ATTTGGCAAGGATATAACGCTCCTTTTGCAGTCTACAGTATGTACGCAGG GGTTGGACGGGCATGGCTCAGTGTGTGCAGTGTGTGCATGTCCTGGCTTC CTTGAGGGACATTCTTCATGGCGGACTCTCTTTTTCAGCTTGCCGCAAGA AGTTTCGTTGGCAACAGCCGCAGCGGCAGCAGGCTTTCATATCGGGAGGA GGGGCGGCGGGGCGGGGCGGGGCGTGGGGGCGTGTTCGAAGACCAGGCTA CTGTTTGTTTTTGCGAGCTTTTGTTTTTTCTTCGTTCTACACGTACCCGT GGTGTCTCTTTTTTCGCTCTTCTGCCTTTTTTGGGACTCGATAAAAATTA TGTTGCTCGCGGCCCCGCACTGCTCTGCTCTGTACTGCAGAGGCGTCTGG GCATCGTCTTGACATGATCCGAGAGGGGGGCTGTTGATGTGTTTTTCCGA TTCTTGTATAGTAAGGCTTCGTTTATGTTTCTTGCCTTTCTTTCCCACAT GTTTTTTCCATTTTTCCATATGCTTTCGGTTTTCCCACATGCTTTCCATT TTCCTCTATATTTTTCCATTTTCCCTTGTCTTTTTTTTCCATTTTTCCAT ACGCTGTACAATTTCCGAAATGTGATTTTCGGTTTTCCCACATGTTTTCC AATTTTTGTTCGTTTTGCTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTT TCCATTTTTTCGTTTTTTTTCAAAATTGTTTCCGGTCTGGTTTTCTTGCT GCTCGGCTCACCGCTATCGGCGCACTTTCCCTCCCACTCACTACTGTACC TGTACTGCACTGGACTGCGTATACCACACCAGGGATGCTTCGGGCATGAC GCTCGAGATGGAGGCTATCGAGACGAGCCTGGCTAAGCTGGCACCGAGCG GCTGGACGCCTGGGGTGGCTTACGACAAAAAAGCGGACCAGGAGTTGATG GAGGAGGACCGCATTGAGGCGCAGAAGAGGACGGAGCGGACGAAGAAGTC GGGTTTCTTTTCTTGTGAGAGGCGTTTCTGTCTGTCTGTCTGTCTGTCTG CCTGGGGTTGTGGTTGTTTCTTTTCCCGACTGACAATGTTACCGTAGGTA TTTATATCTCAGTCCTATGTGGTACATCGAATGTCTTCACGTTGGCTTTA TACATTTCATACATGTGTTGTTGGCTAGTTCGGGTGGTGGGGTTTTCGGT TTTGTTTGCTCCGTTTGTTTCGTTGCTTGGTTTGGATGTTTTGTTTGTTT GTCTGGTGTTTTGGTTAGTTTTTTTTTTTTCCTGGTTGTCTTCTTGATCT GGTGTTGCATCTGTTCGTTCCGTTCGGGTTTTGTTCTGTGTTGTGTTCAC TTTTGCTTATTTGTTCGTCTTGCCTGATTTTTTTTGTTCGGTTGCGTTTG CTTTTCTTGTGTATTTGTCTGTTCGTCTGTTCGTCTGTTTGTTTGCTTGC TTGCTATTAATAGGTGCGATCGTCTTTTCGTTCGTCTGGTGTTGTTTGTT CGGTTCGTCTCTGTTTAGTTGCTCGGTGTGTTTTATTTGTTGTTGTTGAT ATTAATAGTTCTGTTTCTTTATTTGTCTGTTTTGGTTGCCCGGGCGGTTT GGGTTGGTTTGTTTATTCGATGTGGGAGCCGCATGCAGGTCACCGCCCCA GTGCCGTACCAGTACTTAGCTAGTAACACTATGTTCGGAAGGGTGCGGTG TTGAGGCGTTGCTTGCGCAACACGACAGACAGCGAGTCGGGAGCGCGATG GTCGAGGCCTGCGGGGGTAGTGCTTCGACAGCAACATCAGCATCAGAAGC AGCGACACCGATAGACAGCACCGCACAGCAGCAGTAGCCGTGAGATTGTA AAACAATTAGGACCACAGGCCGACGCGGACAACGCTATCAAACCAGTACA TTATGAAATGATGACCCATGAAAAGTCTCACACACAACGACATCAACATC GTGAACTTCAACATGGCTTATTTTGATCTCTTACCGTGTGTACCATCCCG CACTTTTTTTTCACCTGTTCGTGACGTCTGGAATATGTTTTTTTTTAGCA CTAATGTGATACTCGTGCTCGTACCTGTGGATATGATATTTGAACGTTCC GTTCTCTTCGAACTCCTTTGTACTTCTGGTTGTGTTGCCGTTCGTTTGTG ACAGCTTAAAAAACAGTTTTCTTGTGGCGGATTAAAAAAAAAGATCACGA TCGAGCCCCCCTGCGGGGGCCGGCGACGTTAGCTCTTTTTTTTCTTTCGT TTGTTCGTTCGTTAATTGTCGTGAATATAGCAGTTCATACATGTGACAGA TGAGATGAGATGAGATCAGATGAGATGAGATGAGATGAGATCAGATCAGA TAAGAGATCAGATCCCCTTTTCAAGTAATCAATTAATTAATTTTATCCAT CCCTACCCCAGTGATGGGCCACGTACGGTACATGATGTGCAAGATCTGGA TATTGCTTGCCGGGTGGGATGCGTTTGTCGTGCCTACGGTATCGATGGTA CCACTCTGACCGAGATTATAAGATACGTTTTTTAGTTATATCAGAGTCCT GATGGTGCTTATATTCCCGGTCAGAGTGATACCTGTTTACTATGGTCCCG TAATATTAATAATAATAAGAGAAGTTCACGCTATTACGGGGGTCCATAGT TAATAGGACCTATGGTGTACATTAAAACCTATATATTTGCCTATTTTTTC TTATATATTTTGGTCTTACTACCTATGGTACCCCCGTAAATAGTTGCACG CAAAATGCTGCGAAAAGGTTACTGCTGCACGTCTGCTTGCTGCATGATGT TGTCCTTTTTGTCTTATTTTAGACTTGGGAAGATGGAAAATGCTGCAGGA TACCAGGTACTATACTGTTGCGGGGGGCCGTAGTTAATAGGACCAAATAT TGTTAGTGAAAATAGGGCAATATGTAGGTTTTGGTGTGTACCGTAGGTCC TATTTACTATGGTCCCCCCCTATATAATGGGGGGCAATTGTGATGAAGAC CCATCATATACCCAAAAAAACAATATATCTCAGTTGTTTTACTATTAATA GGCAGATTTGGCCCTGATGACTCATGTTTCCCCGTATTACTGTATATATA CAGTCTTGTTGCTCTATGTATGCGTGTTTTAACTTTTTATCTTTTTTCCC CTTTTCAGACTTGAAGATGATTTTCGGGGCGAAGTGGGCGGACTCCAAGT CGCTGGGCAAGATTCCCAGCTCCGACCAGGCAATCTTCGACCGCTGCAAG AAGGATGCGGGTTTCGTGCCGTACTTCATCCGCAAGATGCAGCACAGCGC CGCCAAGAGGGCTTTCGCTTTCGGCTTCCTGCTCCGGATAAACCAGGGGT CAGATGAGGTTCCCGTCACGCTCAAGCAGGTGCGCCGCTGCTGTCTCCTT GTTGTTGTTGTTGGTGGTGGTGGTGATGGTGGTGTGTGGTGTTGGTGTTG GTGTTGGTGTTGGTGTTGGTGTTGGTGTTGGTTGTTGGTGTTGGTGGTGG TGATGGTGGTGGTGTTGTTGTTGGTGTTGGTGTTGTTGTTGGTTGTTGGT GTTGGTGTTGGTTGGTTGTGGTGTTGGTTGGTTGTTGTTGTTTTGTGTTG TTGTTGGTGGTGATGGTGGTGTTGTTGGTTGTTGTTTTGTGTTGGTTGTT GGTGTTGGTTGTTGTTGTTGTTGGTTGTTGGTGTTGGTGATGGTGGTGTT GTTGTTTTGTGTTGTTGGTGTTGGTCTGGTGTTTGTTGTTGTTTTGGTCT GGTGTTGGTTGTTGTTGGTGTTGTTTTGGTCTGGTGTTGTTGGTGTTGTT GTTGTTGTTGGTGGTGGTGGTGTTGTTGGTGTTGTTGTTGTTGTTGATGG TGACGTTGGTGTACACCCGCGAACACCTCAGGCGCTTCTCCGCGCTTGGA GAAAAGCAGCATCTTGCCTGGTCGGTGAAAACCCGACACGCTCCATCCCG GCATCGTGGTAGGCGAAAACCCGACACGCTCTCCCCGGCATTGTTAGCAA TGCGAGGCAGGGTCTACACGGTTGTACGACTACGGCCATGCATGACATGA GTACCCCCCCCCCCACCCGTACACTGCCCACCGGACGTCTCGTTTGTTAC CTCCTTCCAGCTTATGATCTACCAGTGCGCCATTAACGCCGGCAACACCA TCCTGCGCGCCCACTACGCCTTCCTGGCAATGCGCAGCGGGGTTAGCCTA GAACGACTCGTGCAGATCGCGGACGAGACTTCCACGGGGGGAGGCGCGAG CGCAGCGGAGGATGCTGCTATGGCCTTCGCGCAGGCTGCCAGGTATGCAC TAGTGCGCGTGGTGGCGGGGTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig13646:1602..8624+

>mRNA_M-pyrifera_M_contig13646.6021.1 ID=mRNA_M-pyrifera_M_contig13646.6021.1|Name=mRNA_M-pyrifera_M_contig13646.6021.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1488bp|location=Sequence derived from alignment at M-pyrifera_M_contig13646:1602..8624+ (Macrocystis pyrifera P11B4 male)
CAGGTCGGAGCGGTGCCTTCGACGGTTACGACCGCGGACATCGAGCAGCT
CGCGTCGCAGTTCTCGTCAAAGGAGCAGGAGGCGGTCGTCAACGCGACCG
CGGTGATGGGTTTCCTCAACCGATTCATCAGGTCGGAGCGGTGCCTTCGA
CGGTTACGACCGCGGACATCGAGCAGCTCGCGTCGCAGTTCTCGTCAAAG
GAGCAGGAGGCGGTCGTCAACGCGACCGCGGTGATGGGTTTCCTCAACCG
ATTCATGGATGCTTCGGGCATGACGCTCGAGATGGAGGCTATCGAGACGA
GCCTGGCTAAGCTGGCACCGAGCGGCTGGACGCCTGGGGTGGCTTACGAC
AAAAAAGCGGACCAGGAGTTGATGGAGGAGGACCGCATTGAGGCGCAGAA
GAGGACGGAGCGGACGAAGAAGTCGGGTTTCTTTTCTTGGATGCTTCGGG
CATGACGCTCGAGATGGAGGCTATCGAGACGAGCCTGGCTAAGCTGGCAC
CGAGCGGCTGGACGCCTGGGGTGGCTTACGACAAAAAAGCGGACCAGGAG
TTGATGGAGGAGGACCGCATTGAGGCGCAGAAGAGGACGGAGCGGACGAA
GAAGTCGGGTTTCTTTTCTTACTTGAAGATGATTTTCGGGGCGAAGTGGG
CGGACTCCAAGTCGCTGGGCAAGATTCCCAGCTCCGACCAGGCAATCTTC
GACCGCTGCAAGAAGGATGCGGGTTTCGTGCCGTACTTCATCCGCAAGAT
GCAGCACAGCGCCGCCAAGAGGGCTTTCGCTTTCGGCTTCCTGCTCCGGA
TAAACCAGGGGTCAGATGAGGTTCCCGTCACGCTCAAGCAGACTTGAAGA
TGATTTTCGGGGCGAAGTGGGCGGACTCCAAGTCGCTGGGCAAGATTCCC
AGCTCCGACCAGGCAATCTTCGACCGCTGCAAGAAGGATGCGGGTTTCGT
GCCGTACTTCATCCGCAAGATGCAGCACAGCGCCGCCAAGAGGGCTTTCG
CTTTCGGCTTCCTGCTCCGGATAAACCAGGGGTCAGATGAGGTTCCCGTC
ACGCTCAAGCAGCTTATGATCTACCAGTGCGCCATTAACGCCGGCAACAC
CATCCTGCGCGCCCACTACGCCTTCCTGGCAATGCGCAGCGGGGTTAGCC
TAGAACGACTCGTGCAGATCGCGGACGAGACTTCCACGGGGGGAGGCGCG
AGCGCAGCGGAGGATGCTGCTATGGCCTTCGCGCAGGCTGCCAGGTATGC
ACTAGTGCGCGTGGTGGCGGGGTGACTTATGATCTACCAGTGCGCCATTA
ACGCCGGCAACACCATCCTGCGCGCCCACTACGCCTTCCTGGCAATGCGC
AGCGGGGTTAGCCTAGAACGACTCGTGCAGATCGCGGACGAGACTTCCAC
GGGGGGAGGCGCGAGCGCAGCGGAGGATGCTGCTATGGCCTTCGCGCAGG
CTGCCAGGTATGCACTAGTGCGCGTGGTGGCGGGGTGA
back to top