mRNA_M-pyrifera_M_contig13640.6020.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13640.6020.1
Unique NamemRNA_M-pyrifera_M_contig13640.6020.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig13640.6020.1 vs. uniprot
Match: D8LLL5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLL5_ECTSI)

HSP 1 Score: 150 bits (380), Expect = 3.400e-42
Identity = 74/103 (71.84%), Postives = 88/103 (85.44%), Query Frame = 2
Query:    5 QKAKAFLRSYSGRSVRTLCALCVTNLESGRKAEGVHESNVYWREIPPGIVDAVVRRGTVMGSAGGFAVEDPDLRLLVDRIEGSFDSVLGLPVDLLCDLMKGAS 313
            ++AKAFLRSYS RSV+TL ALCVTNL++GR AEGVHES V WREI P +VD V+ RG VMGSAGGFA+E+P LR LVD+IEGS DSVLGLPV+LLC L++ A+
Sbjct:  127 EEAKAFLRSYSCRSVKTLSALCVTNLDNGRAAEGVHESTVAWREISPAVVDDVIARGNVMGSAGGFALEEPGLRSLVDKIEGSVDSVLGLPVELLCTLVERAT 229          
BLAST of mRNA_M-pyrifera_M_contig13640.6020.1 vs. uniprot
Match: A0A7S2XZD4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZD4_9STRA)

HSP 1 Score: 105 bits (263), Expect = 5.360e-25
Identity = 52/98 (53.06%), Postives = 70/98 (71.43%), Query Frame = 2
Query:    8 KAKAFLRSYSGRSVRTLCALCVTNLESGRKAEGVHESNVYWREIPPGIVDAVVRRGTVMGSAGGFAVEDPDLRLLVDRIEGSFDSVLGLPVDLLCDLM 301
            +A+A+L SYSG SV T+  + VTN  SG+ AEGV  + V+W  I P +++ VV RG +M SAGGF +ED DL  LV  I+G+ DSVLGLP+ L+CDL+
Sbjct:  105 QARAYLSSYSGNSVSTVSGVMVTNTGSGKSAEGVDVATVHWDTISPEVIERVVARGEIMTSAGGFRIEDVDLSPLVKNIQGTKDSVLGLPLALVCDLI 202          
BLAST of mRNA_M-pyrifera_M_contig13640.6020.1 vs. uniprot
Match: A0A1G2MS12_9BACT (7-methyl-GTP pyrophosphatase n=1 Tax=Candidatus Taylorbacteria bacterium RIFCSPHIGHO2_02_FULL_46_13 TaxID=1802312 RepID=A0A1G2MS12_9BACT)

HSP 1 Score: 78.2 bits (191), Expect = 1.450e-14
Identity = 41/100 (41.00%), Postives = 61/100 (61.00%), Query Frame = 2
Query:    5 QKAKAFLRSYSGRSVRTLCALCVTNLESGRKAEGVHESNVYWREIPPGIVDAVVRRGTVMGSAGGFAVEDPDLRLLVDRIEGSFDSVLGLPVDLLCDLMK 304
            ++A  FL SY      T  A+ VTN  +G+ A GV  + VY++ IP  I+D VV++G +  +AGG  +ED  L   ++RI+G+ DS+ GLP  LL  LM+
Sbjct:   86 KEAGYFLESYCEHPAETHSAVMVTNTANGKHAMGVDVARVYFKNIPKEIIDEVVKKGAIYTTAGGIQMEDALLAPYIERIDGTVDSLKGLPKALLTKLME 185          
BLAST of mRNA_M-pyrifera_M_contig13640.6020.1 vs. uniprot
Match: A0A7S3XYP5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XYP5_HETAK)

HSP 1 Score: 75.9 bits (185), Expect = 1.480e-14
Identity = 35/87 (40.23%), Postives = 56/87 (64.37%), Query Frame = 2
Query:   44 SVRTLCALCVTNLESGRKAEGVHESNVYWREIPPGIVDAVVRRGTVMGSAGGFAVEDPDLRLLVDRIEGSFDSVLGLPVDLLCDLMK 304
            SV+T+C + V +  +GR A G   + ++W EIP  ++  V+ RG +  SAGGF +EDP L   V R+EG+ +S+ GLP+ L+  L++
Sbjct:    2 SVQTICGVAVRHTGTGRVAVGHDVAEIFWEEIPEEVMAGVIGRGEIFSSAGGFRMEDPALAPFVRRVEGTPESIQGLPLHLVEQLVQ 88          
BLAST of mRNA_M-pyrifera_M_contig13640.6020.1 vs. uniprot
Match: A0A7S1F3R5_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1F3R5_NOCSC)

HSP 1 Score: 80.5 bits (197), Expect = 3.060e-14
Identity = 41/113 (36.28%), Postives = 65/113 (57.52%), Query Frame = 2
Query:    5 QKAKAFLRSYS-GRSVRTLCALCVTNLESGRKAEGVHESNVYWREIPPGIVDAVVRRGTVMGSAGGFAVEDPDLRLLVDRIEGSFDSVLGLPVDLLCDLMKGASS*ALVF*LF 340
            Q+A+A+L SY  G     +  L   N  +G++   V  + +YWR  P  +VD ++  G +   AG F VEDP+LR  +DR EGS DS++GLPV  L ++++  ++  +   LF
Sbjct:  116 QQARAYLASYQRGAGASCVNGLVAHNTRTGKRVTEVDIATLYWRPFPDSVVDHLLSNGEIFTCAGAFNVEDPELRPYLDRTEGSIDSIVGLPVKTLREMLRRVAAPPVTHVLF 228          
BLAST of mRNA_M-pyrifera_M_contig13640.6020.1 vs. uniprot
Match: B9PNA8_TOXGV (Maf family protein n=15 Tax=Toxoplasma gondii TaxID=5811 RepID=B9PNA8_TOXGV)

HSP 1 Score: 76.3 bits (186), Expect = 2.820e-13
Identity = 42/105 (40.00%), Postives = 65/105 (61.90%), Query Frame = 2
Query:    2 RQKAKAFLRSYSGRS--VRTLCALCVTNLESGRKAEGVHESNVYWREIPPGIVDAVVRRGTVMGSAGGFAVEDPDLRLLVDRIEGSFDSVLGLPVDLLCDLMKGA 310
            R++A+AFLR YSG S     + A+ + N  S  + E V ++ V++R +P   + A++  G VM SAGG  V+D  +   VDRIEGS D ++GLP+ ++  L+K A
Sbjct:  140 REEAEAFLRDYSGSSEPAHIIVAVVLVNTYSKMRLEYVDKAMVWFRHMPDAAIKAILDDGMVMTSAGGLVVDDDIMSTYVDRIEGSRDCLMGLPMAVVSQLIKEA 244          
BLAST of mRNA_M-pyrifera_M_contig13640.6020.1 vs. uniprot
Match: A0A1F7VCJ6_9BACT (Nucleoside triphosphate pyrophosphatase n=1 Tax=Candidatus Uhrbacteria bacterium RIFCSPLOWO2_02_FULL_48_18 TaxID=1802408 RepID=A0A1F7VCJ6_9BACT)

HSP 1 Score: 74.7 bits (182), Expect = 3.200e-13
Identity = 35/84 (41.67%), Postives = 52/84 (61.90%), Query Frame = 2
Query:   53 TLCALCVTNLESGRKAEGVHESNVYWREIPPGIVDAVVRRGTVMGSAGGFAVEDPDLRLLVDRIEGSFDSVLGLPVDLLCDLMK 304
            T  A+CV N  +G +  GV  + VY+  IP  ++D ++  G V+ S+G F V DP +   VD IEG+ DS+ GLP+DL+  L+K
Sbjct:  102 TATAVCVANTSTGERVCGVDFAKVYFSSIPDDLIDRLIADGRVLISSGSFIVNDPIIDAYVDHIEGTLDSIEGLPLDLVQSLLK 185          
BLAST of mRNA_M-pyrifera_M_contig13640.6020.1 vs. uniprot
Match: A0A837IKZ0_9BACT (Uncharacterized protein n=4 Tax=Parcubacteria group TaxID=1794811 RepID=A0A837IKZ0_9BACT)

HSP 1 Score: 73.9 bits (180), Expect = 4.440e-13
Identity = 35/100 (35.00%), Postives = 60/100 (60.00%), Query Frame = 2
Query:    5 QKAKAFLRSYSGRSVRTLCALCVTNLESGRKAEGVHESNVYWREIPPGIVDAVVRRGTVMGSAGGFAVEDPDLRLLVDRIEGSFDSVLGLPVDLLCDLMK 304
            ++AK FLR+Y       +  + V N  +G++A  V  S VY++EIP   ++   +   +   AGGFA+ DP L+  ++++EG+ DSV+GLP +L   L++
Sbjct:   72 EEAKEFLRTYYQAPAEVINGIVVVNTGTGKRASAVDSSRVYFKEIPTDALEQFAKLEHIYRRAGGFAIRDPLLQPYIEKVEGTDDSVMGLPKELTKQLIR 171          
BLAST of mRNA_M-pyrifera_M_contig13640.6020.1 vs. uniprot
Match: A0A1F5PKW2_9BACT (Nucleoside triphosphate pyrophosphatase n=1 Tax=Candidatus Doudnabacteria bacterium RIFCSPHIGHO2_12_FULL_48_16 TaxID=1817838 RepID=A0A1F5PKW2_9BACT)

HSP 1 Score: 73.6 bits (179), Expect = 8.210e-13
Identity = 32/99 (32.32%), Postives = 60/99 (60.61%), Query Frame = 2
Query:    8 KAKAFLRSYSGRSVRTLCALCVTNLESGRKAEGVHESNVYWREIPPGIVDAVVRRGTVMGSAGGFAVEDPDLRLLVDRIEGSFDSVLGLPVDLLCDLMK 304
            +A+  L SY  +    +C + VTN ++G+ A+G+  + VY+ +IP  ++D +V+ G V+  AG F ++DP ++  +  I+G   +V+GLP  L   L++
Sbjct:   87 EARRMLESYGAKPAEVICGVVVTNTKTGKTAQGLDSTKVYFHKIPAKLIDEMVKLGRVLDFAGAFHLDDPPIKPYIVHIDGELGTVMGLPRILTKQLIE 185          
BLAST of mRNA_M-pyrifera_M_contig13640.6020.1 vs. uniprot
Match: A0A4Y7K367_PAPSO (Uncharacterized protein n=1 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7K367_PAPSO)

HSP 1 Score: 71.2 bits (173), Expect = 2.330e-12
Identity = 33/95 (34.74%), Postives = 59/95 (62.11%), Query Frame = 2
Query:    2 RQKAKAFLRSYSGRSVRTLCALCVTNLESGRKAEGVHESNVYWREIPPGIVDAVVRRGTVMGSAGGFAVEDPDLRLLVDRIEGSFDSVLGLPVDL 286
            +++A+ F++ YSG    T+ ++ VTNL +G +        +Y+REIP  +++ +V  G V+  AGG  +E P +   ++++EG+ DSV+GLP  L
Sbjct:   40 KEEARQFIKGYSGGRAATVGSVLVTNLTTGTRRGEWDRVEIYFREIPDEVIEKLVDEGVVLYVAGGLIIEHPLILPFIEKVEGTTDSVMGLPKAL 134          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13640.6020.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLL5_ECTSI3.400e-4271.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2XZD4_9STRA5.360e-2553.06Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A1G2MS12_9BACT1.450e-1441.007-methyl-GTP pyrophosphatase n=1 Tax=Candidatus Ta... [more]
A0A7S3XYP5_HETAK1.480e-1440.23Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1F3R5_NOCSC3.060e-1436.28Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
B9PNA8_TOXGV2.820e-1340.00Maf family protein n=15 Tax=Toxoplasma gondii TaxI... [more]
A0A1F7VCJ6_9BACT3.200e-1341.67Nucleoside triphosphate pyrophosphatase n=1 Tax=Ca... [more]
A0A837IKZ0_9BACT4.440e-1335.00Uncharacterized protein n=4 Tax=Parcubacteria grou... [more]
A0A1F5PKW2_9BACT8.210e-1332.32Nucleoside triphosphate pyrophosphatase n=1 Tax=Ca... [more]
A0A4Y7K367_PAPSO2.330e-1234.74Uncharacterized protein n=1 Tax=Papaver somniferum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13640contigM-pyrifera_M_contig13640:7495..8557 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size599
Cds size372
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13640.6020.1prot_M-pyrifera_M_contig13640.6020.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13640 7720..8557 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815822.0556026-UTR-M-pyrifera_M_contig13640:7494..77191622815822.0556026-UTR-M-pyrifera_M_contig13640:7494..7719Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13640 7495..7719 -
1692277588.7535088-UTR-M-pyrifera_M_contig13640:7494..77191692277588.7535088-UTR-M-pyrifera_M_contig13640:7494..7719Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13640 7495..7719 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815822.0684135-CDS-M-pyrifera_M_contig13640:7719..79011622815822.0684135-CDS-M-pyrifera_M_contig13640:7719..7901Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13640 7720..7901 -
1692277588.764128-CDS-M-pyrifera_M_contig13640:7719..79011692277588.764128-CDS-M-pyrifera_M_contig13640:7719..7901Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13640 7720..7901 -
1622815822.0821965-CDS-M-pyrifera_M_contig13640:8367..85571622815822.0821965-CDS-M-pyrifera_M_contig13640:8367..8557Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13640 8368..8557 -
1692277588.7733939-CDS-M-pyrifera_M_contig13640:8367..85571692277588.7733939-CDS-M-pyrifera_M_contig13640:8367..8557Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13640 8368..8557 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13640.6020.1

>prot_M-pyrifera_M_contig13640.6020.1 ID=prot_M-pyrifera_M_contig13640.6020.1|Name=mRNA_M-pyrifera_M_contig13640.6020.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=124bp
APKGEGVPQELLRPVGANTVRPLRDEPRERAEGRGSARVKRLLAGDTARN
RRRCRAERHGHGVGGRVRRGRSRSAVAGGQDRRIVRQRSRLASGSPVRPN
ERGELLSPCLLVILVVGVVESWL*
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mRNA from alignment at M-pyrifera_M_contig13640:7495..8557-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13640.6020.1 ID=mRNA_M-pyrifera_M_contig13640.6020.1|Name=mRNA_M-pyrifera_M_contig13640.6020.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1063bp|location=Sequence derived from alignment at M-pyrifera_M_contig13640:7495..8557- (Macrocystis pyrifera P11B4 male)
GCGCCAAAAGGCGAAGGCGTTCCTCAGGAGCTACTCCGGCCGGTCGGTGC GAACACTGTGCGCCCTCTGCGTGACGAACCTCGAGAGCGGGCGGAAGGCC GAGGGAGTGCACGAGTCAAACGTTTATTGGCGGGAGATACCGCCCGGAAT CGTCGACGCTGTCGTGCGGAGAGGCACGGTCATGGGGTCGGTAAGATTGG CGTCTTGCTCGCGTGTAGCGTCGTCTGGGGTAAATAAGCACTGTAGACGC GCGGCGTAAAGTTTTTCTATCACACCTCCACGATTCTCTCTGCTCGCTTA AGCGCATGTGAGACACATACAGAGACAGAGCTATCATGTTTGCGGCTCGT TGTGTAGTACCGTGCGCTATGCCCGGTCTTGGCGGAAGTGGTGGTACCTG GATCGTAAGTTTATCATTGTTCAGCCATGGCTCCGAAAGTGCATGGCCCT TGCTTTAGCCTGGTTTGGCCGAGGCTCCCGAGGCGCCCCCTCCCCCCCCC CCCGCGCGCCCCGCCCTGCACACAGAGTGATGTCGGTCGCTTACCCCTGC TTGGGGAACCCTTCATGCGCATGCGCTCGATCTCGAGTTTACCGTGTTGC GAAAACCTCAATCTTTTTCGGGAACCATTCGTGCGCTACATGTGTTCGTA TATCAGGCGGGAGGGTTCGCCGTGGAAGATCCAGATCTGCGGTTGCTGGT GGACAGGATAGAAGGATCGTTCGACAGCGTTCTCGGCTTGCCAGTGGATC TCCTGTGCGACCTAATGAAAGGGGCGAGCTCTTGAGCCCTTGTCTTTTAG TTATTTTGGTGGTTGGGGTGGTAGAGTCGTGGCTGTAGCTGTGTTCGTAA CCCCGCCAGAGAACAGCATTTCGGCAAGTCTTTTTGTGGAGAGTAAGTAG GCCCACGGTTTCCTCTCAAGAACAATTCTGAGCGAAACTCGCAAGATTTC GGTAGAGCGGCTCGATAATTTTCATTCGTTCTACGATGGCGAAGCGGGCT TTTGTGTCATGGAGGTCTTCTTGGTGTGCTATTCATACAAAAAAACACTT AGAAATACCACGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13640:7495..8557-

>mRNA_M-pyrifera_M_contig13640.6020.1 ID=mRNA_M-pyrifera_M_contig13640.6020.1|Name=mRNA_M-pyrifera_M_contig13640.6020.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=744bp|location=Sequence derived from alignment at M-pyrifera_M_contig13640:7495..8557- (Macrocystis pyrifera P11B4 male)
GCGCCAAAAGGCGAAGGCGTTCCTCAGGAGCTACTCCGGCCGGTCGGTGC
GAACACTGTGCGCCCTCTGCGTGACGAACCTCGAGAGCGGGCGGAAGGCC
GAGGGAGTGCACGAGTCAAACGTTTATTGGCGGGAGATACCGCCCGGAAT
CGTCGACGCTGTCGTGCGGAGAGGCACGGTCATGGGGTCGGCGCCAAAAG
GCGAAGGCGTTCCTCAGGAGCTACTCCGGCCGGTCGGTGCGAACACTGTG
CGCCCTCTGCGTGACGAACCTCGAGAGCGGGCGGAAGGCCGAGGGAGTGC
ACGAGTCAAACGTTTATTGGCGGGAGATACCGCCCGGAATCGTCGACGCT
GTCGTGCGGAGAGGCACGGTCATGGGGTCGGCGGGAGGGTTCGCCGTGGA
AGATCCAGATCTGCGGTTGCTGGTGGACAGGATAGAAGGATCGTTCGACA
GCGTTCTCGGCTTGCCAGTGGATCTCCTGTGCGACCTAATGAAAGGGGCG
AGCTCTTGAGCCCTTGTCTTTTAGTTATTTTGGTGGTTGGGGTGGTAGAG
TCGTGGCTGTAGGCGGGAGGGTTCGCCGTGGAAGATCCAGATCTGCGGTT
GCTGGTGGACAGGATAGAAGGATCGTTCGACAGCGTTCTCGGCTTGCCAG
TGGATCTCCTGTGCGACCTAATGAAAGGGGCGAGCTCTTGAGCCCTTGTC
TTTTAGTTATTTTGGTGGTTGGGGTGGTAGAGTCGTGGCTGTAG
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