mRNA_M-pyrifera_M_contig13637.6019.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13637.6019.1
Unique NamemRNA_M-pyrifera_M_contig13637.6019.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig13637.6019.1 vs. uniprot
Match: D8LHQ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHQ6_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 2.820e-37
Identity = 67/91 (73.63%), Postives = 75/91 (82.42%), Query Frame = 1 
Query:    1 QVPIIAMLDARSGVECDVGWAGGEESDGRYADPASAPGPSFFAEMFPGTFRPLMKFLKVFMHQRGLDKPFGGGVGSFKLYALIAAHLEACG 273
            +VPIIAMLDAR GV+CDV WAG       + DPA APGP++FA+MFPGTFRPL   LKVFM QRGLDKPF GGVGSFKLYALIA+HL+ACG
Sbjct: 1268 KVPIIAMLDARGGVDCDVSWAGDGGGGDCWEDPAEAPGPTYFAKMFPGTFRPLALILKVFMRQRGLDKPFTGGVGSFKLYALIASHLQACG 1358
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BLAST of mRNA_M-pyrifera_M_contig13637.6019.1 vs. uniprot
Match: A0A6H5JXD9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXD9_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 9.780e-37
Identity = 66/91 (72.53%), Postives = 74/91 (81.32%), Query Frame = 1 
Query:    1 QVPIIAMLDARSGVECDVGWAGGEESDGRYADPASAPGPSFFAEMFPGTFRPLMKFLKVFMHQRGLDKPFGGGVGSFKLYALIAAHLEACG 273
            +VPIIAMLDAR GV+CDV WAG       + DP  APGP++FA+MFPGTFRPL   LKVFM QRGLDKPF GGVGSFKLYALIA+HL+ACG
Sbjct: 1322 KVPIIAMLDARGGVDCDVSWAGDGGGGDCWEDPTEAPGPAYFAKMFPGTFRPLALILKVFMRQRGLDKPFTGGVGSFKLYALIASHLQACG 1412
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BLAST of mRNA_M-pyrifera_M_contig13637.6019.1 vs. uniprot
Match: A0A1X6NIT5_PORUM (TUTase domain-containing protein (Fragment) n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NIT5_PORUM)

HSP 1 Score: 61.6 bits (148), Expect = 4.210e-9
Identity = 31/88 (35.23%), Postives = 53/88 (60.23%), Query Frame = 1 
Query:    1 QVPIIAMLDARSGVECDVGWAGGEESDGRYADPASAPGPSFFAEMFPGTFRPLMKFLKVFMHQRGLDKPFGGGVGSFKLYALIAAHLE 264
            +VP++ M DA SGV+CD+ +   E+ +G    P + P    +   +P    PL+  +K F+HQRGL++ F GG+ S+ +  L+ +HL+
Sbjct:  141 RVPLVKMTDAASGVQCDISF---EQPNG----PNNVPVIRRYVRDYPA-LHPLLLIVKAFLHQRGLNEVFTGGLSSYSVLLLVVSHLQ 220
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BLAST of mRNA_M-pyrifera_M_contig13637.6019.1 vs. uniprot
Match: F0WD93_9STRA (Uncharacterized protein AlNc14C65G4613 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WD93_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 5.380e-8
Identity = 24/46 (52.17%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:  124 FAEMFPGTFRPLMKFLKVFMHQRGLDKPFGGGVGSFKLYALIAAHL 261
            F  ++  TF+ L+ FLK +MHQ GLDKP+ GG+GSF+LY ++A  L
Sbjct:  215 FQRVYGSTFKNLVLFLKEYMHQHGLDKPYTGGIGSFRLYVMVAYIL 260
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BLAST of mRNA_M-pyrifera_M_contig13637.6019.1 vs. uniprot
Match: A0A835Z4Y0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4Y0_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 5.880e-8
Identity = 36/84 (42.86%), Postives = 42/84 (50.00%), Query Frame = 1 
Query:    1 QVPIIAMLDARSGVECDVGWAGGEESDGRYADPASAPGPSFFAEMFPGTFRPLMKFLKVFMHQRGLDKPFGGGVGSFKLYALIA 252
            ++PI+AM  A  GVECDV WA         A   +A         +P  F PL   LKVF+HQRGLDK F G    F    LIA
Sbjct:  727 RIPILAMTTA-CGVECDVAWAAAXXXXXXXAPVGAAA----LRARWPALFPPLAVLLKVFLHQRGLDKVFSGSTSCFAEGQLIA 805
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BLAST of mRNA_M-pyrifera_M_contig13637.6019.1 vs. uniprot
Match: A0A7S4JQU7_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JQU7_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 5.920e-8
Identity = 23/40 (57.50%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:  145 TFRPLMKFLKVFMHQRGLDKPFGGGVGSFKLYALIAAHLE 264
            +F P++ FLK+ +HQ  LDKPF GG+GS+KLY L+A H+E
Sbjct:  910 SFAPVVLFLKILLHQTDLDKPFTGGLGSYKLYVLVAHHVE 949
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BLAST of mRNA_M-pyrifera_M_contig13637.6019.1 vs. uniprot
Match: A0A7S3HNA6_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HNA6_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.520e-7
Identity = 34/88 (38.64%), Postives = 49/88 (55.68%), Query Frame = 1 
Query:    1 QVPIIAMLDARSGVECDVGWAGGEESDGRYADPASAPGPSFFAEMFPGTFRPLMKFLKVFMHQRGLDKPFGGGVGSFKLYALIAAHLE 264
            +VPI+  L  R+GVECDV     +++             S      P   + L  FLK++++Q GLD PF GG+GS+KLY L+A H+E
Sbjct:  300 RVPIL-NLTHRNGVECDVSLDMSQQATSLVVR-------SLLQRCGPALAK-LSAFLKIYLNQLGLDAPFTGGLGSYKLYVLLARHIE 378
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BLAST of mRNA_M-pyrifera_M_contig13637.6019.1 vs. uniprot
Match: A0A7S0WFE2_9CHLO (Hypothetical protein n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0WFE2_9CHLO)

HSP 1 Score: 56.2 bits (134), Expect = 3.690e-7
Identity = 32/88 (36.36%), Postives = 51/88 (57.95%), Query Frame = 1 
Query:    1 QVPIIAMLDARSGVECDVGWAGGEESDGRYADPASAPGPSFFAEMFPGTFRPLMKFLKVFMHQRGLDKPFGGGVGSFKLYALIAAHLE 264
            +VPI+   +  SG + D+ +   + ++G    PASA       + FP   RPL   LK F+HQRGL++ + GG+GS+ L  ++ AHL+
Sbjct:  228 RVPIVKFEEVESGFQFDISF---DVANG----PASAEIVRENMKRFPA-LRPLTTVLKAFLHQRGLNEVYSGGIGSYALLCMVMAHLQ 307
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BLAST of mRNA_M-pyrifera_M_contig13637.6019.1 vs. uniprot
Match: H3H389_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H389_PHYRM)

HSP 1 Score: 55.8 bits (133), Expect = 4.950e-7
Identity = 36/96 (37.50%), Postives = 53/96 (55.21%), Query Frame = 1 
Query:    1 QVPIIAMLDARSGVECDVGWAGGEESDGRYADPASAPGPSF-FAEMFPGT----FRPLMKFLKVFMHQRGLDKPFGGGVGSFKLYALIAAHLEACG 273
            ++PI+ +LD ++ +  D+G   GE  D      AS  G S   A+    T    F  ++ FLK F+HQ  LDKPF GG+GSF+LY ++A   +  G
Sbjct:  269 KIPILMVLDTKTKLSIDIG-VNGEAFD------ASEHGRSTSLAQRLQNTLGAPFTTMVMFLKEFLHQFDLDKPFTGGLGSFRLYMMVAYIFQRSG 357
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BLAST of mRNA_M-pyrifera_M_contig13637.6019.1 vs. uniprot
Match: A4RZU9_OSTLU (Uncharacterized protein (Fragment) n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4RZU9_OSTLU)

HSP 1 Score: 55.1 bits (131), Expect = 8.800e-7
Identity = 32/88 (36.36%), Postives = 50/88 (56.82%), Query Frame = 1 
Query:    1 QVPIIAMLDARSGVECDVGWAGGEESDGRYADPASAPGPSFFAEMFPGTFRPLMKFLKVFMHQRGLDKPFGGGVGSFKLYALIAAHLE 264
            +VPI+   +  SG + D+ +   + ++G    PASA         FP   RPL   LK F+HQRGL++ + GG+GS+ L  ++ AHL+
Sbjct:  162 RVPIVKFEEVESGHQFDISF---DVANG----PASAEIVRENMRRFPA-LRPLTTVLKAFLHQRGLNEVYSGGIGSYALLCMVMAHLQ 241
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13637.6019.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHQ6_ECTSI2.820e-3773.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXD9_9PHAE9.780e-3772.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1X6NIT5_PORUM4.210e-935.23TUTase domain-containing protein (Fragment) n=1 Ta... [more]
F0WD93_9STRA5.380e-852.17Uncharacterized protein AlNc14C65G4613 n=1 Tax=Alb... [more]
A0A835Z4Y0_9STRA5.880e-842.86Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4JQU7_9STRA5.920e-857.50Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S3HNA6_9STRA1.520e-738.64Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S0WFE2_9CHLO3.690e-736.36Hypothetical protein n=1 Tax=Ostreococcus mediterr... [more]
H3H389_PHYRM4.950e-737.50Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A4RZU9_OSTLU8.800e-736.36Uncharacterized protein (Fragment) n=1 Tax=Ostreoc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13637contigM-pyrifera_M_contig13637:5157..7418 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.4
Seed ortholog evalue2.5e-29
Seed eggNOG ortholog2880.D8LHQ6
KEGG koko:K03514
KEGG Pathwayko03018,map03018
KEGG ModuleM00393
Hectar predicted targeting categoryother localisation
EggNOG free text desc.RNA uridylyltransferase activity
EggNOG OGsCOG5260@1,KOG1906@2759
EC2.7.7.19
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03016,ko03019
Exons2
Model size276
Cds size258
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13637.6019.1prot_M-pyrifera_M_contig13637.6019.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13637 5157..7400 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815821.9874463-CDS-M-pyrifera_M_contig13637:5156..52581622815821.9874463-CDS-M-pyrifera_M_contig13637:5156..5258Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13637 5157..5258 -
1692277588.7190921-CDS-M-pyrifera_M_contig13637:5156..52581692277588.7190921-CDS-M-pyrifera_M_contig13637:5156..5258Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13637 5157..5258 -
1622815822.001119-CDS-M-pyrifera_M_contig13637:7244..74001622815822.001119-CDS-M-pyrifera_M_contig13637:7244..7400Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13637 7245..7400 -
1692277588.7340457-CDS-M-pyrifera_M_contig13637:7244..74001692277588.7340457-CDS-M-pyrifera_M_contig13637:7244..7400Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13637 7245..7400 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815822.0214725-UTR-M-pyrifera_M_contig13637:7400..74181622815822.0214725-UTR-M-pyrifera_M_contig13637:7400..7418Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13637 7401..7418 -
1692277588.743356-UTR-M-pyrifera_M_contig13637:7400..74181692277588.743356-UTR-M-pyrifera_M_contig13637:7400..7418Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13637 7401..7418 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13637.6019.1

>prot_M-pyrifera_M_contig13637.6019.1 ID=prot_M-pyrifera_M_contig13637.6019.1|Name=mRNA_M-pyrifera_M_contig13637.6019.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=86bp
MLDARSGVECDVGWAGGEESDGRYADPASAPGPSFFAEMFPGTFRPLMKF
LKVFMHQRGLDKPFGGGVGSFKLYALIAAHLEACG*
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mRNA from alignment at M-pyrifera_M_contig13637:5157..7418-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13637.6019.1 ID=mRNA_M-pyrifera_M_contig13637.6019.1|Name=mRNA_M-pyrifera_M_contig13637.6019.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2262bp|location=Sequence derived from alignment at M-pyrifera_M_contig13637:5157..7418- (Macrocystis pyrifera P11B4 male)
CAGGTGCCGATAATCGCGATGCTCGACGCGCGGAGCGGCGTGGAGTGCGA
CGTGGGCTGGGCAGGGGGCGAAGAGAGCGACGGACGATACGCCGACCCCG
CAAGCGCACCCGGACCGTCGTTCTTCGCCGAGATGTTTCCGGGAACTTTC
CGGCCGCTGATGAAGTTCCTCAAGGTGGCAGATTTTTTTTGTCAGTATTG
CGACTTAGGACGAAATGGTTGGTACGGGCTGCTACCGTGAAGCACGCAAG
AGAACCCACATGGTTGGTACGAGTAGCCCCCTCGAAGCAATTTATCAGTT
GCTTTCTCGACAGCAGGGAGGAAACTGCAAACGCCGAGCGATGATTCTGC
GTGTGGAATTATGTAGATTGTTATGAGTAAATAGTAGACCTTCCCAAGGC
AACCACCTTCGTTTATGTGTACTTGTCTCCCTTGTTTTGGAGATAATCGG
CTCCGAGGTTCGCCCTAGGGAGTGTGCTATTACACTCCAGGGTGTGTGTT
AATTTATCAAAAGGTGTGTTCGTTAAGCCCAGGGGGTGTGTTACTTCACA
CGAGGGGGTGAGTTAATTCATCCCAGGGTGTGTGCTCATTCACTCCAGGG
GGTGTGTTACTCATCCCAGGGAATGTGTCATTTCATCCCAGGGGGTGTGT
TATTTCATCCTAGGGGGTGTGCTAATTCACCCCAGGGGCTGTGTTAATTT
AATTCATCCCCGGGGGTCTGTTATTTCATCCCGAGGGGTGTGTTATTTCT
TGCTTGTACTTACTTTTACTGTAGGCTGGGGTGACCTGCAGAACGAGCCA
GTCAGTTACGCTTTGGCCCATCTTCGACAAACGATTGATTGCCGCCACGT
GCTATTACGGGGGTCCATAGTTAATAGGACCTATGTTATACATAAAAAAA
CTATATATTTATCTTTTTTTACTAGCAATATTTGATCCTATTTACTATGG
TCCCCCGTGCTACTATTTCACACATCTGACGGATCATGTACGGATCGTTC
CTATTTCCTGATCTACAGCAGTAGTAGACCTTTTCAAGGCAGAAGATCTG
ATCCCGATCTTGTATACATGATGTAGCTGTTGCTGCCGAGGTTGTGGGAG
CCGTATGGTCTGTGCATGATTTATTACGGGGGACCATAGTCAATAGGACC
TACGGTACACACAAACACCCATATATTTCCATATTTTTAGTGACAATATA
TGGTCCTATTTGCTATGGTCCCCCGTAATAGGAAAAGTACTTCATGATCA
ACAGCAGTAGTGCTAGACCTAGTGGGGGGCAGAATATCTATTCCCGATCT
TATATATATATGTGATGTGGCTAATGTTGCCGAAATTGTGGGAGCCGTAT
GATCTTGTGTATGATCTATTGTAAGACACGTTCCCTAGGTTGGATCTGTA
CTGCAGCAGATCCTGCACAACATCGCACAACGGCAGGTTAGGATCTAGAT
TATCTGTATATGATCTGTAGACGAACTCTCTGATCTGGCCCAGGTGTGTA
AGTGGTGTTGACGACTTGACCCAGCTTCGACAAACGGTCAATTGTCCACA
CAAACTCCTCAGTACATTTTCACTCGGAAAAATTCCCGAGAAAAATCTGA
GGCGGTTCGGGGTTGATGGTTCATACTGTACTGCACTATCTCTTCATTAT
ATCGCCGTTCGCACATATTTCCCGGGCGGGCAGGGTTTACCGACAGTATT
ATCATTGCTACTATTATCACCACTGTATAGCATCTATTGGTAACATTTCA
CGACTATGAATAGGTGTAAATCCTTGATAAAAAACTGGTTCGTTTTGGTG
CCGTCTAGCGCTTGTCCCGACACCTGTACGATCAATCTCTTCCTCGTACC
CGGGTACGAAGAATCTCCTTCTTCTCGTTCCGGGTACGAAGAATATCCTT
CTTCTCGTACCGGGTGCGAAGAATATCCTTCTTCTCGTACCGGGTACGAC
GCATGAGTATCATTAACAATTAACACAATTTATACTTGTACGAACATACG
TCTTGTTCTGTACAACTCTTTTTTTGTTTTTAACTGATACCCTTAATTGC
CGCTGGTTCGTTTTGGTGCCGTTTTTTTACCTGTCCCGATATCTACTGCT
GTACATGAAATGTCTCCTTTTCTCACCGGGCGCGTTCGAAACATGAAACA
TGGTTGATAGGTTTTCATGCACCAACGAGGCCTTGACAAGCCCTTCGGCG
GGGGCGTCGGATCGTTCAAGCTCTATGCTCTCATTGCGGCGCATCTCGAG
GCCTGCGGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13637:5157..7418-

>mRNA_M-pyrifera_M_contig13637.6019.1 ID=mRNA_M-pyrifera_M_contig13637.6019.1|Name=mRNA_M-pyrifera_M_contig13637.6019.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=516bp|location=Sequence derived from alignment at M-pyrifera_M_contig13637:5157..7418- (Macrocystis pyrifera P11B4 male)
ATGCTCGACGCGCGGAGCGGCGTGGAGTGCGACGTGGGCTGGGCAGGGGG
CGAAGAGAGCGACGGACGATACGCCGACCCCGCAAGCGCACCCGGACCGT
CGTTCTTCGCCGAGATGTTTCCGGGAACTTTCCGGCCGCTGATGAAGTTC
CTCAAGATGCTCGACGCGCGGAGCGGCGTGGAGTGCGACGTGGGCTGGGC
AGGGGGCGAAGAGAGCGACGGACGATACGCCGACCCCGCAAGCGCACCCG
GACCGTCGTTCTTCGCCGAGATGTTTCCGGGAACTTTCCGGCCGCTGATG
AAGTTCCTCAAGGTTTTCATGCACCAACGAGGCCTTGACAAGCCCTTCGG
CGGGGGCGTCGGATCGTTCAAGCTCTATGCTCTCATTGCGGCGCATCTCG
AGGCCTGCGGGTGAGTTTTCATGCACCAACGAGGCCTTGACAAGCCCTTC
GGCGGGGGCGTCGGATCGTTCAAGCTCTATGCTCTCATTGCGGCGCATCT
CGAGGCCTGCGGGTGA
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