mRNA_M-pyrifera_M_contig13617.6017.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13617.6017.1
Unique NamemRNA_M-pyrifera_M_contig13617.6017.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig13617.6017.1 vs. uniprot
Match: D7FZE7_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZE7_ECTSI)

HSP 1 Score: 468 bits (1203), Expect = 1.300e-155
Identity = 237/317 (74.76%), Postives = 275/317 (86.75%), Query Frame = 1 
Query:  124 SFRYATQPELKSVPLKIITSMSAVPDKVLEKIIELQTHEPSQFEELGLPLAIKRLAWEKDANLFVRIASPHADKYISSEYAPKMIAASQQVRFYKHLDTIKRRKLMGPQRINALAECTGGRPILIGHLCDDIADKFKEESSLSKAGMWATLLTDVLVTARERAYGSIADQSVDRLCALASRLDLAVREDLFGDAAVRDVQRLFREATGIVEGQQEVAK-ETKRAALDKAKAEDESTKLRKTLKSAWSAVSKMDSHSWFKEAVTEAIAVGYHKVVKVPMDLGTILKKIKGGGYPSFGDFDRDLKLMWENCRLYNSEVT 1071
            + R+AT  +LKSVPLKII+S+SAVP++VL+K+ ELQ  +P QFEELGLPLAIK LAWEKD+ LFVRI SPHADKY++SE++PKM+ +SQQ+RFY+ LDTIKRRKLMGP+RINALAE TGGRPILIG LCD IA++F +E+SLS+AG+WATLLTDVLVTARE AYGSIADQSVDRLCALASRLDLAVRED+F D  VRDVQRLFR ATGI EGQ E    E + A  ++AK +D STK++KTLK+AWS VSKMD + WFK+ VTEAIA GYHKV+K PMDLGTILKKIKGGGYPSFGDFDRDLKLMW+NCR YN E T
Sbjct:    4 AIRFATHADLKSVPLKIISSLSAVPERVLDKMNELQKLQPEQFEELGLPLAIKHLAWEKDSVLFVRIVSPHADKYLASEFSPKMVLSSQQLRFYRSLDTIKRRKLMGPERINALAEYTGGRPILIGFLCDYIAERFSQENSLSEAGLWATLLTDVLVTAREHAYGSIADQSVDRLCALASRLDLAVREDVFNDGTVRDVQRLFRLATGIGEGQHEPGMVERREAKQEEAKQKDGSTKIQKTLKTAWSLVSKMDKNKWFKDPVTEAIAEGYHKVIKTPMDLGTILKKIKGGGYPSFGDFDRDLKLMWQNCRTYNGEGT 320
[Close]
BLAST of mRNA_M-pyrifera_M_contig13617.6017.1 vs. uniprot
Match: A0A6H5KV46_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV46_9PHAE)

HSP 1 Score: 220 bits (561), Expect = 4.880e-66
Identity = 115/164 (70.12%), Postives = 136/164 (82.93%), Query Frame = 1 
Query:   16 VSRASVYKQLLENALRALLDQIPHLTEDRMLLLLNDSFRYATQPELKSVPLKIITSMSAVPDKVLEKIIELQTHEPSQFEELGLPLAIKRLAWEKDANLFVRIASPHADKYISSEYAPKMIAASQQVRFYKHLDTIKRRKLMGPQRINALAECTGGRPILIGHL 507
            VSRASVYKQLLE++LR LLDQIPHL E+ +L LL DSF++AT  +LKSVPLKII+S+SAVP++V           P QFEELGLPLAIK LAWEKD+ LFVRI SPHADKY++SE++PKM+ +SQQ+RFY+ LDTIKRRKLMGP RINALAE TG RPILIG +
Sbjct:  125 VSRASVYKQLLEDSLRVLLDQIPHLPENVLLDLLTDSFKFATHADLKSVPLKIISSLSAVPERV-----------PEQFEELGLPLAIKHLAWEKDSVLFVRIVSPHADKYLASEFSPKMVLSSQQLRFYRSLDTIKRRKLMGPDRINALAEYTGDRPILIGEM 277
[Close]
BLAST of mRNA_M-pyrifera_M_contig13617.6017.1 vs. uniprot
Match: A0A6H5KMY2_9PHAE (Bromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMY2_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 1.590e-27
Identity = 55/66 (83.33%), Postives = 58/66 (87.88%), Query Frame = 1 
Query:  874 MDSHSWFKEAVTEAIAVGYHKVVKVPMDLGTILKKIKGGGYPSFGDFDRDLKLMWENCRLYNSEVT 1071
            MD + WFK+ VTEAIA GYHKVVK PMDLGTILKKIKGGGYPSFGDFDRDLKLMW+NCR YN E T
Sbjct:    1 MDKNKWFKDPVTEAIAEGYHKVVKTPMDLGTILKKIKGGGYPSFGDFDRDLKLMWQNCRTYNGEGT 66
[Close]
BLAST of mRNA_M-pyrifera_M_contig13617.6017.1 vs. uniprot
Match: A0A7S1EQ24_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1EQ24_9RHOD)

HSP 1 Score: 73.9 bits (180), Expect = 3.700e-11
Identity = 40/92 (43.48%), Postives = 53/92 (57.61%), Query Frame = 1 
Query:  811 AEDESTKLRKTLKSAWSAVSKMDSHSWFKEAVTEAIAVGYHKVVKVPMDLGTILKKIKGGGYPSFGDFDRDLKLMWENCRLYNS-EVTYKKT 1083
            A DE   L+ ++   W  VS+ D+ + F E V   I   Y +V+K PMDL TI KKI+GG Y S  DF  DL+LMW NC  +N  +  + KT
Sbjct:   34 ARDEKGILKYSMLMVWDEVSRKDAKNIFAEPVPVDIIPEYAEVIKFPMDLSTIRKKIEGGKYNSLSDFADDLELMWSNCETFNEPDSVFTKT 125
[Close]
BLAST of mRNA_M-pyrifera_M_contig13617.6017.1 vs. uniprot
Match: A0A8J2X769_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X769_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 4.960e-11
Identity = 86/341 (25.22%), Postives = 147/341 (43.11%), Query Frame = 1 
Query:   61 RALLDQIPHLTEDRMLLLLNDSFRYATQPELKSVPLKIITSMSAVPDKVLEKIIELQTHEPSQFEELGLPLAIKRLAWEKDANLFVR---IASPHADKYISS--EYAPKMIAASQQVRFYKHLDTIKRRKLMGPQRINALAECTG-GRPILIGHLCDDIADKFKEESSLSKAGMWATLLTDVLVTARERAYGSIADQSVDRLCALASRLDLAVREDLFGDAAVRDVQRLFREATGIVEGQQEVAKETKRAALDKAKAEDESTKLRKTLKSAWSAVSKMDSHSWFKEAVTEAIAVGYHKVVKVPMDLGTILKKIKG--GGYPSFGDFDRDLKLMWENCRLYN 1059
            R L+  IP ++ +  + LL  S+ ++  PEL+ V L ++ +       VL + +    H  S+     LP   K + W+    +  R   + + +A+++ S+    A + +A S   R  K   T++R   + P     L E  G  + IL     + I    + +    +  ++  L  D+L+  + +  G +      R+ A+   LD       + DA++    RL      +++    V                    +R+ L+  W  + + DS   F   VT+AIA GY K +K PMDL T+  KI      Y S G F+ D+KLM ENCR+YN
Sbjct:   26 RRLVTAIPRISYNARVALLEASWSHSHVPELRVVSLALLETWPGRIPSVLAEAL----HRLSEDAFRKLP---KLVRWKCCVTISARFRIMLASYAERWFSNVAPSASRSLAVSGDSRLMKGGCTVRR--ALDPSLYLVLYELIGHSKGILFAAFVEVIWRGVRYDFLNHRVSLYPILFIDILLGLKPQTTGGVR-----RIAAI---LDSVAMNGNWDDASLT---RLISRMKHMIDANSSVPP----------------CDIREVLEECWKQLQEADSTDLFAFPVTDAIAPGYSKKIKEPMDLSTMRSKILRVHAPYRSIGAFECDIKLMVENCRVYN 330
[Close]
BLAST of mRNA_M-pyrifera_M_contig13617.6017.1 vs. uniprot
Match: A0A0F7SWB6_PHARH (Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins n=1 Tax=Phaffia rhodozyma TaxID=264483 RepID=A0A0F7SWB6_PHARH)

HSP 1 Score: 68.2 bits (165), Expect = 1.020e-8
Identity = 28/62 (45.16%), Postives = 40/62 (64.52%), Query Frame = 1 
Query:  889 WFKEAVTEAIAVGYHKVVKVPMDLGTILKKIKGGGYPSFGDFDRDLKLMWENCRLYNSEVTY 1074
            WF + V++     YH +VK PMDLGT+ KK+KG  Y +  +F  DL L+W+NC LYN+   +
Sbjct:   60 WFLKPVSKKDVPDYHTIVKHPMDLGTVAKKVKGKQYKTKQEFKDDLNLIWDNCLLYNTSTVH 121
[Close]
BLAST of mRNA_M-pyrifera_M_contig13617.6017.1 vs. uniprot
Match: F4R9C0_MELLP (Bromo domain-containing protein n=1 Tax=Melampsora larici-populina (strain 98AG31 / pathotype 3-4-7) TaxID=747676 RepID=F4R9C0_MELLP)

HSP 1 Score: 67.8 bits (164), Expect = 1.220e-8
Identity = 30/61 (49.18%), Postives = 41/61 (67.21%), Query Frame = 1 
Query:  892 FKEAVTEAIAVGYHKVVKVPMDLGTILKKIKGGGYPSFGDFDRDLKLMWENCRLYNSEVTY 1074
            F   V +A A  Y+ ++K PMDLGT+LKK+K G Y + G F  DL+L+W NC  YNS V++
Sbjct:   62 FLSRVKKADAPDYYDIIKKPMDLGTVLKKVKSGQYKAKGQFIEDLELIWSNCFQYNSFVSH 122
[Close]
BLAST of mRNA_M-pyrifera_M_contig13617.6017.1 vs. uniprot
Match: A0A5C3EGU3_9BASI (Related to transcription regulator SPT7 n=2 Tax=Ustilago trichophora TaxID=86804 RepID=A0A5C3EGU3_9BASI)

HSP 1 Score: 67.0 bits (162), Expect = 2.230e-8
Identity = 30/61 (49.18%), Postives = 41/61 (67.21%), Query Frame = 1 
Query:  892 FKEAVTEAIAVGYHKVVKVPMDLGTILKKIKGGGYPSFGDFDRDLKLMWENCRLYNSEVTY 1074
            F   V++  A  Y++V+K PMDLGT+ KK+K G Y S   F  DL L+W+NC LYNS+ T+
Sbjct:   60 FLSKVSKRDAPDYYEVIKHPMDLGTMQKKVKSGQYKSKKQFAHDLNLIWDNCLLYNSDPTH 120
[Close]
BLAST of mRNA_M-pyrifera_M_contig13617.6017.1 vs. uniprot
Match: UPI0003F0EED1 (protein EMSY-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0EED1)

HSP 1 Score: 66.6 bits (161), Expect = 3.430e-8
Identity = 29/63 (46.03%), Postives = 41/63 (65.08%), Query Frame = 1 
Query:  871 KMDSHSWFKEAVTEAIAVGYHKVVKVPMDLGTILKKIKGGGYPSFGDFDRDLKLMWENCRLYN 1059
            ++++ SWF   V    A GYHK++K PMD GTI KK++ G Y  F DF++D+ L+  NC  YN
Sbjct: 1237 ELNAASWFTRPVDPHEAPGYHKIIKQPMDFGTIKKKLETGQYRDFNDFNQDMILVKGNCMKYN 1299
[Close]
BLAST of mRNA_M-pyrifera_M_contig13617.6017.1 vs. uniprot
Match: A0A0L6V425_9BASI (Bromo domain-containing protein n=1 Tax=Puccinia sorghi TaxID=27349 RepID=A0A0L6V425_9BASI)

HSP 1 Score: 66.2 bits (160), Expect = 3.840e-8
Identity = 29/61 (47.54%), Postives = 41/61 (67.21%), Query Frame = 1 
Query:  892 FKEAVTEAIAVGYHKVVKVPMDLGTILKKIKGGGYPSFGDFDRDLKLMWENCRLYNSEVTY 1074
            F   V +A A  Y+ V+K PMDLGT+LKK+KGG Y +   F+ DL+L+W NC  YN ++ +
Sbjct:   67 FLSRVRKADAPDYYDVIKRPMDLGTVLKKVKGGVYKTKSSFNDDLELIWTNCFTYNLDMNH 127
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13617.6017.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZE7_ECTSI1.300e-15574.76Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KV46_9PHAE4.880e-6670.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMY2_9PHAE1.590e-2783.33Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A7S1EQ24_9RHOD3.700e-1143.48Hypothetical protein (Fragment) n=1 Tax=Timspurcki... [more]
A0A8J2X769_9STRA4.960e-1125.22Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A0F7SWB6_PHARH1.020e-845.16Histone acetyltransferase SAGA/ADA, catalytic subu... [more]
F4R9C0_MELLP1.220e-849.18Bromo domain-containing protein n=1 Tax=Melampsora... [more]
A0A5C3EGU3_9BASI2.230e-849.18Related to transcription regulator SPT7 n=2 Tax=Us... [more]
UPI0003F0EED13.430e-846.03protein EMSY-like n=1 Tax=Saccoglossus kowalevskii... [more]
A0A0L6V425_9BASI3.840e-847.54Bromo domain-containing protein n=1 Tax=Puccinia s... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13617contigM-pyrifera_M_contig13617:652..6945 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score469.9
Seed ortholog evalue1.1e-129
Seed eggNOG ortholog2880.D7FZE7
Preferred nameBPTF
Hectar predicted targeting categoryother localisation
EggNOG free text desc.histone acetyltransferase activity
EggNOG OGsCOG5076@1,KOG1472@2759
COG Functional cat.BK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons8
Model size1095
Cds size1095
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13617.6017.1prot_M-pyrifera_M_contig13617.6017.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13617 652..6945 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815821.794835-CDS-M-pyrifera_M_contig13617:651..7681622815821.794835-CDS-M-pyrifera_M_contig13617:651..768Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13617 652..768 -
1692277588.6026573-CDS-M-pyrifera_M_contig13617:651..7681692277588.6026573-CDS-M-pyrifera_M_contig13617:651..768Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13617 652..768 -
1622815821.8125224-CDS-M-pyrifera_M_contig13617:1288..14261622815821.8125224-CDS-M-pyrifera_M_contig13617:1288..1426Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13617 1289..1426 -
1692277588.6121223-CDS-M-pyrifera_M_contig13617:1288..14261692277588.6121223-CDS-M-pyrifera_M_contig13617:1288..1426Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13617 1289..1426 -
1622815821.8240867-CDS-M-pyrifera_M_contig13617:2248..23631622815821.8240867-CDS-M-pyrifera_M_contig13617:2248..2363Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13617 2249..2363 -
1692277588.6203828-CDS-M-pyrifera_M_contig13617:2248..23631692277588.6203828-CDS-M-pyrifera_M_contig13617:2248..2363Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13617 2249..2363 -
1622815821.8374624-CDS-M-pyrifera_M_contig13617:3645..38701622815821.8374624-CDS-M-pyrifera_M_contig13617:3645..3870Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13617 3646..3870 -
1692277588.6286316-CDS-M-pyrifera_M_contig13617:3645..38701692277588.6286316-CDS-M-pyrifera_M_contig13617:3645..3870Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13617 3646..3870 -
1622815821.849585-CDS-M-pyrifera_M_contig13617:4267..43741622815821.849585-CDS-M-pyrifera_M_contig13617:4267..4374Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13617 4268..4374 -
1692277588.6368728-CDS-M-pyrifera_M_contig13617:4267..43741692277588.6368728-CDS-M-pyrifera_M_contig13617:4267..4374Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13617 4268..4374 -
1622815821.8598936-CDS-M-pyrifera_M_contig13617:5156..53451622815821.8598936-CDS-M-pyrifera_M_contig13617:5156..5345Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13617 5157..5345 -
1692277588.645477-CDS-M-pyrifera_M_contig13617:5156..53451692277588.645477-CDS-M-pyrifera_M_contig13617:5156..5345Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13617 5157..5345 -
1622815821.8693151-CDS-M-pyrifera_M_contig13617:6250..63231622815821.8693151-CDS-M-pyrifera_M_contig13617:6250..6323Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13617 6251..6323 -
1692277588.6544385-CDS-M-pyrifera_M_contig13617:6250..63231692277588.6544385-CDS-M-pyrifera_M_contig13617:6250..6323Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13617 6251..6323 -
1622815821.878772-CDS-M-pyrifera_M_contig13617:6814..69451622815821.878772-CDS-M-pyrifera_M_contig13617:6814..6945Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13617 6815..6945 -
1692277588.6640007-CDS-M-pyrifera_M_contig13617:6814..69451692277588.6640007-CDS-M-pyrifera_M_contig13617:6814..6945Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13617 6815..6945 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13617.6017.1

>prot_M-pyrifera_M_contig13617.6017.1 ID=prot_M-pyrifera_M_contig13617.6017.1|Name=mRNA_M-pyrifera_M_contig13617.6017.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=365bp
MNATQVSRASVYKQLLENALRALLDQIPHLTEDRMLLLLNDSFRYATQPE
LKSVPLKIITSMSAVPDKVLEKIIELQTHEPSQFEELGLPLAIKRLAWEK
DANLFVRIASPHADKYISSEYAPKMIAASQQVRFYKHLDTIKRRKLMGPQ
RINALAECTGGRPILIGHLCDDIADKFKEESSLSKAGMWATLLTDVLVTA
RERAYGSIADQSVDRLCALASRLDLAVREDLFGDAAVRDVQRLFREATGI
VEGQQEVAKETKRAALDKAKAEDESTKLRKTLKSAWSAVSKMDSHSWFKE
AVTEAIAVGYHKVVKVPMDLGTILKKIKGGGYPSFGDFDRDLKLMWENCR
LYNSEVTYKKTPAT*
back to top

mRNA from alignment at M-pyrifera_M_contig13617:652..6945-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13617.6017.1 ID=mRNA_M-pyrifera_M_contig13617.6017.1|Name=mRNA_M-pyrifera_M_contig13617.6017.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=6294bp|location=Sequence derived from alignment at M-pyrifera_M_contig13617:652..6945- (Macrocystis pyrifera P11B4 male)
ATGAATGCAACACAGGTCAGTCGCGCTTCCGTGTACAAGCAGCTGCTCGA
GAACGCCCTACGGGCCTTACTGGATCAGATCCCGCACCTCACTGAGGACC
GCATGCTGCTGCTTCTCAACGATTCTTTCCGGTGAGGGAGCTGGTGGGCC
AACGTCGCGTCGCCGCCGCCGGCTCGTACGAGACGAGCAGAGTCGGCGCC
TAGTCGGTCGCTGTGGTTCGTTTCTTCGTTGCTTTTGGCTAGGGTGTTGC
TGGCCGGGTTGGTTGCTTTGATTGGTTTGATTGCTTTGGCTATGTTGGGT
ATGGTCCAGTTGGGTGTGGTTTGATGTGGTGCCGATTGCTTCGGCTTTGA
TGACTTTGACGTGATTTTGCTTATTTGATTTGGCTTGTGAGTTGGTTTGA
TTTGATTTGATTTGGTTCTATGATATTCTTTTACTTTTGTTGGGGTTTGG
TTCGATTTGATTTGATTTGATGTGATTTTTTATGTCTTGTTTTTTATTTT
GGTGTGTTCGCCAGTTCGAGATTTGGTTGCTTTGCCTTCGGGTTAAGTGA
TTGGGGTACGTACCGGTAGGCGAGTTGAACAGAGGACTGAGAACTTGAAT
CTGGCGACCCATCCCGTGCCAGGTACGCCACACAGCCGGAACTGAAGAGC
GTACCACTGAAGATCATCACCAGCATGTCAGCCGTTCCAGACAAGGTGGG
AAGGGGGGGTGGGGGGGAGAGCGGGCGCGGTCGTCACCGGATAGCTCGAA
ACTGGAGCACAATGCGCCTTGTTTTCGATCCTTTTCTCGAATAACTTAAC
AGTTTTTTTTTTTCACTATCGCAAGCAATATCCGACAAAACTTCCAAGTA
TTTCGTCCCGAAAAACGTGGGTGGAGCGCTAAAGGTCTTAAGGAGACCTC
ACGAAAAAGGGGATGCTGTCGCAACCGGCTATTTGTATTGCAGAAACGGT
AGTAGTGGATATTAATAGTAACAGCAGCAGCCCCAACGACGGGAAATGCC
CGTTTTGTTTGCTGCAACGGGCAAACCGCGCCGTGTCGCAACCCGTCAAA
CAAATGGGTCGCCTTTTTTTTCTGTGAGCTACGTGCGGGAGAAAAAATGA
CGAGGTCTCTCGAAGCTTTACACAACCCGAATACGAGCGCGTTTGTTTCA
TCTCCTATGTCCCCGTGATCACCGCCTGATCTTTGCCCGTACGTGCGTTG
GTTTTCTATAGTACCGATACAGTTCGCGTCAATTCATGGAACAACCCCCC
CACACACACATACAATGTCTGCCTGGTCGTGGCCACACCAGAAGAACAAA
GCAATTACTTCGACGATGTCACCCAATGCAAGAAAGTCCGTATCACAGGC
GGTCCTTAGCAGGATGCAGCTTACCCTTCATGCGACTCGCCCGAACACCT
CCCGCTACGCTTCGCCCTTGGTGCAAGCAACAAATGTCTGCCTAGTCAGT
GAAAATCCGATATGCTCCGTCCCGGCGTTGTAGGGACGCGAGGAGGGTCT
ATGGTCATACGACTACGGCCGTGCATGACATGACTTCACCCCGCCCCGTC
CTCGCCCTCGTTGCTTTCCCTTGGGGAAACATTCTGTTCTCCACTCGTAG
GTGCTTGAGAAAATCATCGAGCTGCAGACGCACGAGCCGAGCCAGTTCGA
AGAGCTAGGCTTACCCCTTGCTATCAAGCGTCTGGCCTGGGAGAAAGACG
CGAATCTCTTCGTGAGGATAGCGTCGCCGCACGCGGACAAGTACATCTCC
AGCGAGTACGCGCCGAAGATGATCGCCGCATCTCAGCAGGTGGGCGGGGC
GGGGCGAGGCAGAATATGCACTGTCCAGCTTTGTGTTCTGTGCCGCCTCC
GCCGCCCCCCCGGCCGCCCCGTCCCTTTGTTGACCTGCGTGATGATGATG
GGGATGATGGTGACGGTGATGACGATGATGGTGGTAGTAGTGGTGACAAC
GGTGGTGATGGTGGTGGTGATGATGTTCCCGCATTGGTTGGGGTATCCGT
CACCCAAAATGTTTTTTTACAGTAGCGCCAGCCTCAAGAACTTCCTTGGA
AGCATCGGAAAATTGACAGCTTGACAACTTCATATTCATGTAGTTATCTA
TACCATAGGTTTTGTTTTTGACCTTGACCAGTACTTGTTGCAGTCTTGAG
CGAGGTTTGGCATGCCAACCGCAGGTTGACCTTGATGTTGACGTGTCTAT
TGTCGGTGATGTTGACCTGTCTATTGTCGATGATGTTGACGTGTCTATTG
TCGGTGATGTTGACGTGTCTGTTGTCGGTGATGTTCATGTATCTGTTGTC
GTTCAACGGTACCACAGCTCGAAGCTTTTTTGCGACTGGACTCGTCGGCT
TGTCGAAAGGACATTATTCAAGCTCACCGTTCCACGACGGAAATCCGAAA
AAAAACGAACTGCGCAAAAACACGCGCTTGCATGACAGCACCAAAAAATA
CTGCTGCCCAACCTGCTCGTTGGTTTCCCCCTGTTTTATGTGTGTGTTTT
TTCATATTGCCATTGCGCGTGGTCGTCCGGCTGCGTCGGTCTGCGCGTGT
ATGCGATACTTAAAAATTCAGGTGAGGTTCTACAAGCACCTGGACACCAT
CAAGCGGCGGAAGCTCATGGGCCCGCAGCGAATCAATGCTCTGGCGGAGT
GTACTGGGGGGCGTCCGATTCTGATCGGGTGAGACCGCCCACAGCAACAG
TAAAAGGCAGAGCCGAAGTCAGAGCCACAGCCACAGCCACACGGCCTTGG
CATCTCTCTCGTGCCTTTCTCTGTCGCTCTGTCTCGGTCTGTGATTATCT
CTCTCTCTTCTCTCTCGCCATTCTCAGTTTTTTCCGTTCTCTTACTTCTC
AATTCCTTTATCTCTCGCTCGCACCACACAGGTACGGACAGCGTATGACA
CGCTCCCCGCCTTACGTCAGCCGCCACTTCCTCCCCATCACACCAACCCC
ACGTCCCCCCCTCGTCGCATCCCTAGTGCTCATGTCGAAACCCACCGCGT
ATCATCTACATCCGCGAACACCAGCTTGACCATCCCTTGCCTTCTCGCTT
GCCCCCACCTTTTCTACTCGAGCAGGCATCTGTGCGACGACATCGCCGAC
AAGTTTAAGGAAGAGTCCTCCCTCTCGAAGGCGGGGATGTGGGCCACCCT
CCTCACGGATGTCCTCGTCACCGCCAGGGAGCGAGCCTACGGCAGCATCG
CGGACCAGTCCGTGGACCGGCTCTGCGCTCTAGCGTCGCGCCTGGACCTC
GCCGTGAGGGAAGATCTCTTCGGAGACGCCGCGGTCAGGGACGTGCAGCG
GTGAGTGCGCCTGTCTTTTTTTCTCGCTGCCGCGCTTCCACCGCGCTTGC
GGCTAAGCGTCAGATATAAAGCTGTAATAACATACTATCTATACGTATGT
GTTGGAAGCTCATTGGCTCTGGTTGCACCGCATACTTTGTGTAGGCTTGT
AGTGCATACCCCGACAGCTACTTCTGTCATGTTTTGGGGGTCTTCTAAGG
AAAGGTATCTTCGGAGACGCCGCTGCTAGGGACGTGCAAGCGGTGAGTAC
GCCTTTTATTTTCCTCGCAGCCGTGCGTGCCGTGCTTGCCCCGCAGGTGC
CGTGGAAGGCCTGTAACTGCAGGCCTGCGTGTAGACCACAGCTCGGAAGC
TTCGTGCAATTGCCTTGTTTAGGGCTCGTAGCTGCCTTTATAGGGACAGG
TAGCAGTGAGTGTGCCTTTTTTTTTTCTTGCTGCCGCGCTGCCACCGCGC
TTGCCTCGCACTGCTATTATGACAGACTTGTAGGCCTGCCTGTAGTGCAC
ACCTAGTAGCCCGGAATCTACCTCTGTCTAATTTGGGGTTCGTAGGGGAA
GGCATGTTTGGAGACGTCGCGGTTAGGGATACGCAGCGATGAGTACACCA
TGTTTTATTCTTGCTGCTGCGCTTGCCGCGTGTGTCGCACAGCTGCTGTC
GTAGCAGACCTGTATGCGTGCCTGTACGTGGTGCATTCGTAGCCCGGAAC
CTGCAGCTGACTGGTGTAGGGCTCGCAAATGCCTTTAGTTGGTGCGCCTT
TTCTTTTTTTTTGCCGTCGCGCTTGCCGCGCTGCTTGCGGCTGCCGCGTA
TGCCGCACAGCTGCTGTTGTGGCAGACCTGCATGCCTGCCTGCATGTAGT
GCATGGCCTTGAAGCTACGCACCCGTGTCTTGTATGGAGAAGTGTACCAG
GTATTAGCCGTAGCCCGGGAGCTTGTCTTGCTCATGATCTCGTTGCTGCC
TGCGTATACGAATAGCCCGGACGTTGTCGATGTCCTTTTCCCTCCTCGCG
CCCCCCCTTTCCTCCCTGTGGCCATCTTTGTAGCCCAAGCGCATGACGAC
TGGCAGAAGTTTCGTTAGCCCTACCTAGCCCTAGCCATGTGGTACAAAGT
TTTCTGCGCCGCTAATACTCGTGAGGAGTATCAGGGATATATTGCCTGTT
ACCATCGAACATCAAATCCGGCTATTTTATCTGAAGACCTTGGTTCGCAT
TGCCGCTAATTGATTGCTTTCGATCCCTCGATCAACCCGTCTCCTTGCTC
GATGCCGTGTTTTTTTCTCTTCACGGACGCAGTTTGTTCCGCGAGGCTAC
AGGAATCGTGGAGGGTCAGCAGGAGGTGGCGAAGGAGACCAAGCGGGCGG
CTTTGGATAAGGCTAAGGCGGAGGACGAGAGCACCAAGCTCCGGAAGGTG
GGTGGCGTGTTTTGGCACGGTGCTTGGGGACATAGTTGTCGCTGTCTGTT
GCTGGTGGTGTTACGTACGGTAGGTGCTGCTGCTGCTGTTGCTAGTGTTT
GTGCAATATGCGACTACTGCTTGTGTTAATGTAGTGGTATGAACAGGTGG
TTACTGCTGATGTTGACACAGTAGGTGGCTACTGCTGGTGTTGATATATA
CAGTTGGTGTAGATATATGTTCTCCGTGTGTGTGGCGGCTGCGGTAAGAA
GTGACGCGGGTAGCATTAGCGGTGACAGAGGGCGGCCGCGATCGGCTTTT
GCGGACTCCGAGACTTTTAGTTGTCGTTTAGTCTGTCTCGTTTAGACTGG
GCACGACTCAACAACTATTTTTTACTTTTTTTTGTTACGAATACACTTTT
CATGGGGGTCGAAATATTCCGACCAATAATATTCGCATCCTCTCTGTCCC
CCCCCCCCGTTGCCCGTCCTCCTCCCAAACTCTATCCCACTTTTTTTGGG
TCAACCCCGCTTTTTCTTCGCCCAGTTAACAAATCAACCACCCAACCAAA
CTACCAAACAAACAACCAATCAACCGACTTCCAGCCAACGAACCAACCAA
CGATTATAAACCAACATGCCAACCACTATCAACCAATATCAACCAACGAA
CGAACGAACCAACCGAAATCGTCTTCGTGCTCCGATTTTTCCGATCTCAA
TCCTCTCGCGCGTTTCTGCGCCTCCCTTTTTGCAAACGCCTCCCTCCTTG
TAAACGCCGCCGCTGCTGCTGCCGCCGCCGCCGCGTGCCCCCTTTCAACA
CGTTGGCTGATAACCTCAGACGCTGAAATCGGCGTGGTCGGCGGTGTCCA
AGATGGACAGTCATAGCTGGTTCAAGGAGGCGGTGACCGAGGCCATTGCG
GTGGGTTACCACAAGGTCGTCAAGGTTCCCATGGACCTCGGGACCATCCT
CAAGAAGGTGCGGCAACGTTTTATTTGTCTTTGGCGAAATATTTACAACT
GAAGCTATGTAGAAAGTAAAGCGTGCTTCCAAAACTGCAAACGAACATTG
AAAAAGCGGACCTAAAGATGGTTTAAACGATACGTAACACTAAAAGAGCG
AACTTCAACCTGACGGTCACTCATTTTCCGTTTTTTTCCGCGTTGGGTGG
TAGGTCGTTGATATGTGGTTTGGTTGAGAGGTTGGTTGATTGGTAGGTTG
ATTGATTGTTCCGAAGGTGTGTTACAATACAGTATGTACTCCCCTTCGAG
TCCTACCACCGTGAATGCCTGCGTATAAACCTAGCCCGGCCTGTCCCATC
ACACCTAGGGAGTGCTTAACACGCTAGCGCTACCAGTCAATTTGTAGGAA
TTCACCTTCGCCTCTGGAATCAGTGTCCCCCTGTCCTTCCCGGCTTCCCG
CGCTATTATACTAACTCTGACTTGTGTGGTGTTTTTTTTTCGTTCGTCTT
CCCCTACACCTATCCCGAAATTTCCAGATCAAAGGCGGAGGGTACCCCAG
CTTTGGCGACTTCGACCGCGACCTCAAGCTCATGTGGGAAAACTGCCGCT
TGTATAACTCGGAGGTGACCTACAAAAAAACACCTGCTACATGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig13617:652..6945-

>mRNA_M-pyrifera_M_contig13617.6017.1 ID=mRNA_M-pyrifera_M_contig13617.6017.1|Name=mRNA_M-pyrifera_M_contig13617.6017.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2190bp|location=Sequence derived from alignment at M-pyrifera_M_contig13617:652..6945- (Macrocystis pyrifera P11B4 male)
ATGAATGCAACACAGGTCAGTCGCGCTTCCGTGTACAAGCAGCTGCTCGA
GAACGCCCTACGGGCCTTACTGGATCAGATCCCGCACCTCACTGAGGACC
GCATGCTGCTGCTTCTCAACGATTCTTTCCGATGAATGCAACACAGGTCA
GTCGCGCTTCCGTGTACAAGCAGCTGCTCGAGAACGCCCTACGGGCCTTA
CTGGATCAGATCCCGCACCTCACTGAGGACCGCATGCTGCTGCTTCTCAA
CGATTCTTTCCGGTACGCCACACAGCCGGAACTGAAGAGCGTACCACTGA
AGATCATCACCAGCATGTCAGCCGTTCCAGACAAGGTACGCCACACAGCC
GGAACTGAAGAGCGTACCACTGAAGATCATCACCAGCATGTCAGCCGTTC
CAGACAAGGTGCTTGAGAAAATCATCGAGCTGCAGACGCACGAGCCGAGC
CAGTTCGAAGAGCTAGGCTTACCCCTTGCTATCAAGCGTCTGGCCTGGGA
GAAAGACGCGAATCTCTTCGTGAGGATAGCGTCGCCGCACGCGGACAAGT
ACATCTCCAGCGAGTACGCGCCGAAGATGATCGCCGCATCTCAGCAGGTG
CTTGAGAAAATCATCGAGCTGCAGACGCACGAGCCGAGCCAGTTCGAAGA
GCTAGGCTTACCCCTTGCTATCAAGCGTCTGGCCTGGGAGAAAGACGCGA
ATCTCTTCGTGAGGATAGCGTCGCCGCACGCGGACAAGTACATCTCCAGC
GAGTACGCGCCGAAGATGATCGCCGCATCTCAGCAGGTGAGGTTCTACAA
GCACCTGGACACCATCAAGCGGCGGAAGCTCATGGGCCCGCAGCGAATCA
ATGCTCTGGCGGAGTGTACTGGGGGGCGTCCGATTCTGATCGGGTGAGGT
TCTACAAGCACCTGGACACCATCAAGCGGCGGAAGCTCATGGGCCCGCAG
CGAATCAATGCTCTGGCGGAGTGTACTGGGGGGCGTCCGATTCTGATCGG
GCATCTGTGCGACGACATCGCCGACAAGTTTAAGGAAGAGTCCTCCCTCT
CGAAGGCGGGGATGTGGGCCACCCTCCTCACGGATGTCCTCGTCACCGCC
AGGGAGCGAGCCTACGGCAGCATCGCGGACCAGTCCGTGGACCGGCTCTG
CGCTCTAGCGTCGCGCCTGGACCTCGCCGTGAGGGAAGATCTCTTCGGAG
ACGCCGCGGTCAGGGACGTGCAGCGGCATCTGTGCGACGACATCGCCGAC
AAGTTTAAGGAAGAGTCCTCCCTCTCGAAGGCGGGGATGTGGGCCACCCT
CCTCACGGATGTCCTCGTCACCGCCAGGGAGCGAGCCTACGGCAGCATCG
CGGACCAGTCCGTGGACCGGCTCTGCGCTCTAGCGTCGCGCCTGGACCTC
GCCGTGAGGGAAGATCTCTTCGGAGACGCCGCGGTCAGGGACGTGCAGCG
TTTGTTCCGCGAGGCTACAGGAATCGTGGAGGGTCAGCAGGAGGTGGCGA
AGGAGACCAAGCGGGCGGCTTTGGATAAGGCTAAGGCGGAGGACGAGAGC
ACCAAGCTCCGGAAGTTTGTTCCGCGAGGCTACAGGAATCGTGGAGGGTC
AGCAGGAGGTGGCGAAGGAGACCAAGCGGGCGGCTTTGGATAAGGCTAAG
GCGGAGGACGAGAGCACCAAGCTCCGGAAGACGCTGAAATCGGCGTGGTC
GGCGGTGTCCAAGATGGACAGTCATAGCTGGTTCAAGGAGGCGGTGACCG
AGGCCATTGCGGTGGGTTACCACAAGGTCGTCAAGGTTCCCATGGACCTC
GGGACCATCCTCAAGAAGACGCTGAAATCGGCGTGGTCGGCGGTGTCCAA
GATGGACAGTCATAGCTGGTTCAAGGAGGCGGTGACCGAGGCCATTGCGG
TGGGTTACCACAAGGTCGTCAAGGTTCCCATGGACCTCGGGACCATCCTC
AAGAAGATCAAAGGCGGAGGGTACCCCAGCTTTGGCGACTTCGACCGCGA
CCTCAAGCTCATGTGGGAAAACTGCCGCTTGTATAACTCGGAGGTGACCT
ACAAAAAAACACCTGCTACATGAATCAAAGGCGGAGGGTACCCCAGCTTT
GGCGACTTCGACCGCGACCTCAAGCTCATGTGGGAAAACTGCCGCTTGTA
TAACTCGGAGGTGACCTACAAAAAAACACCTGCTACATGA
back to top