mRNA_M-pyrifera_M_contig13597.6011.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13597.6011.1
Unique NamemRNA_M-pyrifera_M_contig13597.6011.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig13597.6011.1 vs. uniprot
Match: A0A6H5KMP8_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMP8_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 3.960e-34
Identity = 79/151 (52.32%), Postives = 96/151 (63.58%), Query Frame = 1 
Query:   40 SSLGVSARVDVMDDRIEALERELEVGGXXXXXXXXXSIATQSEDGHDGSGEDDHHGDNAKRRVLKLGSPLEADKIQPLPAHLLPRPGCGVSKAKKPGKKGPKRPKVAASSQSAPGPSQGLENAVRELMTNYEARSSERVPFYCRVCQFQGD 492
            S  G SA+   +DD+I ALEREL+ G          SI++                   + R  KL SPLEA+KI+PLPAHLLPRPGCGV K  K  KK  K+P  A  + + PGPSQGL++AV+EL+ NYEARSSERVPFYCRVC+FQGD
Sbjct:   68 SENGASAKDVTVDDQIAALERELK-GADVSSSDAESSISSXXXXXXXXXX---XXXXXERGRATKLVSPLEAEKIEPLPAHLLPRPGCGVHKDNK--KK--KKPSAAVGTTALPGPSQGLDSAVKELLANYEARSSERVPFYCRVCKFQGD 210
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BLAST of mRNA_M-pyrifera_M_contig13597.6011.1 vs. uniprot
Match: D7FWN0_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWN0_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 3.090e-33
Identity = 78/151 (51.66%), Postives = 91/151 (60.26%), Query Frame = 1 
Query:   40 SSLGVSARVDVMDDRIEALERELEVGGXXXXXXXXXSIATQSEDGHDGSGEDDHHGDNAKRRVLKLGSPLEADKIQPLPAHLLPRPGCGVSKAKKPGKKGPKRPKVAASSQSAPGPSQGLENAVRELMTNYEARSSERVPFYCRVCQFQGD 492
            S  G SA+   +DD+I ALEREL+          XX             G     G     RV KL SPLE +KI+PLPAHLLPRPGCGV K KK        P  A  + + PGPSQGL++AV+EL+ NYEARSSERVPFYCRVC+FQGD
Sbjct:   70 SENGTSAKDVAVDDQIAALERELKGANDSSSDAEXXXXXXXXXXXXXXRGAGRERG-----RVAKLVSPLEVEKIEPLPAHLLPRPGCGVHKDKK---XXXXXPSAAVGTTALPGPSQGLDSAVKELLANYEARSSERVPFYCRVCKFQGD 212
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BLAST of mRNA_M-pyrifera_M_contig13597.6011.1 vs. uniprot
Match: A0A835Z659_9STRA (C2H2-type domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z659_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 8.770e-9
Identity = 23/32 (71.88%), Postives = 29/32 (90.62%), Query Frame = 1 
Query:  394 GLENAVRELMTNYEARSSERVPFYCRVCQFQG 489
            GLE AV EL+ NYEA+S+ER+P+YCRVC+FQG
Sbjct:    2 GLEGAVNELLANYEAKSAERIPYYCRVCKFQG 33
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BLAST of mRNA_M-pyrifera_M_contig13597.6011.1 vs. uniprot
Match: B7FRV3_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FRV3_PHATC)

HSP 1 Score: 59.3 bits (142), Expect = 1.810e-7
Identity = 57/174 (32.76%), Postives = 86/174 (49.43%), Query Frame = 1 
Query:    1 KEKEEGGPGRKRASSLGVSARVDVMDDRIEALERELEVGGXXXXXXXXXSIATQS-EDGHDGSGEDDHHG--DNAKRRVLKLGSPLEADKIQPLPAHLLP----RPGCGV-----SKAKKPGKKGPKRPKVAASSQSAPGPSQGLENAVRELMTNYEARSSERVPFYCRVCQFQ 486
            ++K + G  +   S   +S   D +D+ I  LE EL               A +S ED HD S  + +    D+++  VL L S ++ D+I+PLP++LLP    R   G+     S+     +   K+ K+ +S         GLE AV+E++  Y  RSSER+PFYCRVC  Q
Sbjct:   25 RQKRKAGKAKPEPSVKVISQPPDDIDEEIRRLEAEL---------------ANESDEDEHDSSDVETNSETEDDSRGTVLCLSS-VQKDRIEPLPSNLLPSNRKRSLKGIDRVNASERDDADQSNKKKSKLVSS---------GLEAAVKEVLDGYVPRSSERLPFYCRVCAQQ 173
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BLAST of mRNA_M-pyrifera_M_contig13597.6011.1 vs. uniprot
Match: A0A4D9D0V7_9STRA (C2H2-type domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D0V7_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 4.470e-6
Identity = 35/95 (36.84%), Postives = 50/95 (52.63%), Query Frame = 1 
Query:  205 GDNAKRRVLKLGSPLEADKIQPLPAHLLPRPGCGVSKAKKPGKKGPKRPKVAASSQSAPGPSQGLENAVRELMTNYEARSSERVPFYCRVCQFQG 489
            G + +R+ L     + +D++Q            G   A++PG      P + ASS SA     GL   V EL++NY+  SSER PFYCR+C+FQG
Sbjct:  117 GRSGRRKRLTRKEKIASDRMQE-----------GNGGAQRPGDPAGSLPPLQASS-SASSAGAGLAQTVAELLSNYQPASSERRPFYCRICRFQG 199
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BLAST of mRNA_M-pyrifera_M_contig13597.6011.1 vs. uniprot
Match: I2CRP9_NANGC (C2h2 zinc finger protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CRP9_NANGC)

HSP 1 Score: 51.2 bits (121), Expect = 1.380e-5
Identity = 20/32 (62.50%), Postives = 25/32 (78.12%), Query Frame = 1 
Query:  394 GLENAVRELMTNYEARSSERVPFYCRVCQFQG 489
            GL   V EL++NY+  SSER PFYCR+C+FQG
Sbjct:    2 GLAQTVAELLSNYQPASSERRPFYCRICRFQG 33
[Close]
BLAST of mRNA_M-pyrifera_M_contig13597.6011.1 vs. uniprot
Match: W7TIZ9_9STRA (C2h2 zinc finger n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIZ9_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 3.730e-5
Identity = 20/32 (62.50%), Postives = 25/32 (78.12%), Query Frame = 1 
Query:  394 GLENAVRELMTNYEARSSERVPFYCRVCQFQG 489
            GL   V EL++NY+  SSER PFYCR+C+FQG
Sbjct:   33 GLAQTVAELLSNYQPASSERRPFYCRICRFQG 64
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13597.6011.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KMP8_9PHAE3.960e-3452.32C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FWN0_ECTSI3.090e-3351.66C2H2 zinc finger protein n=1 Tax=Ectocarpus silicu... [more]
A0A835Z659_9STRA8.770e-971.88C2H2-type domain-containing protein (Fragment) n=1... [more]
B7FRV3_PHATC1.810e-732.76Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A4D9D0V7_9STRA4.470e-636.84C2H2-type domain-containing protein n=1 Tax=Nannoc... [more]
I2CRP9_NANGC1.380e-562.50C2h2 zinc finger protein (Fragment) n=1 Tax=Nannoc... [more]
W7TIZ9_9STRA3.730e-562.50C2h2 zinc finger n=1 Tax=Nannochloropsis gaditana ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13597contigM-pyrifera_M_contig13597:7072..7569 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.6
Seed ortholog evalue3.9e-07
Seed eggNOG ortholog2850.Phatr32507
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Zinc-finger double-stranded RNA-binding
EggNOG OGs2C7FU@1,2RRAS@2759,2XCKR@2836
Ec32 ortholog descriptionC2H2 zinc finger protein
Ec32 orthologEc-06_001270.1
COG Functional cat.A
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size498
Cds size498
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815821.2464504-CDS-M-pyrifera_M_contig13597:7071..75691622815821.2464504-CDS-M-pyrifera_M_contig13597:7071..7569Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13597 7072..7569 +
1692277588.2489858-CDS-M-pyrifera_M_contig13597:7071..75691692277588.2489858-CDS-M-pyrifera_M_contig13597:7071..7569Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13597 7072..7569 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13597.6011.1prot_M-pyrifera_M_contig13597.6011.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13597 7072..7569 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13597.6011.1

>prot_M-pyrifera_M_contig13597.6011.1 ID=prot_M-pyrifera_M_contig13597.6011.1|Name=mRNA_M-pyrifera_M_contig13597.6011.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=166bp
KEKEEGGPGRKRASSLGVSARVDVMDDRIEALERELEVGGGSSSSDDGGS
IATQSEDGHDGSGEDDHHGDNAKRRVLKLGSPLEADKIQPLPAHLLPRPG
CGVSKAKKPGKKGPKRPKVAASSQSAPGPSQGLENAVRELMTNYEARSSE
RVPFYCRVCQFQGDR*
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mRNA from alignment at M-pyrifera_M_contig13597:7072..7569+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13597.6011.1 ID=mRNA_M-pyrifera_M_contig13597.6011.1|Name=mRNA_M-pyrifera_M_contig13597.6011.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=498bp|location=Sequence derived from alignment at M-pyrifera_M_contig13597:7072..7569+ (Macrocystis pyrifera P11B4 male)
AAGGAGAAAGAGGAGGGAGGGCCGGGCCGTAAGAGGGCCAGTAGTCTCGG
AGTTTCTGCTAGAGTTGACGTAATGGACGATCGAATCGAGGCCTTGGAGC
GTGAGCTTGAAGTTGGTGGCGGGAGCAGCAGCAGCGACGATGGAGGTTCG
ATCGCCACACAGAGCGAAGATGGCCATGACGGATCAGGAGAGGACGACCA
CCACGGTGATAATGCAAAGCGGCGAGTACTCAAGCTTGGGTCTCCTCTTG
AGGCCGACAAGATCCAACCGTTGCCTGCGCATCTCTTGCCGCGACCCGGT
TGTGGCGTGTCCAAGGCGAAGAAGCCGGGAAAGAAGGGCCCTAAACGGCC
CAAGGTGGCCGCCTCTTCGCAATCGGCACCAGGGCCTTCTCAGGGGCTGG
AAAACGCTGTCAGGGAGCTGATGACGAACTATGAGGCCCGGTCGTCTGAG
CGAGTGCCGTTTTACTGCAGGGTCTGCCAGTTCCAGGGAGACAGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13597:7072..7569+

>mRNA_M-pyrifera_M_contig13597.6011.1 ID=mRNA_M-pyrifera_M_contig13597.6011.1|Name=mRNA_M-pyrifera_M_contig13597.6011.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=996bp|location=Sequence derived from alignment at M-pyrifera_M_contig13597:7072..7569+ (Macrocystis pyrifera P11B4 male)
AAGGAGAAAGAGGAGGGAGGGCCGGGCCGTAAGAGGGCCAGTAGTCTCGG
AGTTTCTGCTAGAGTTGACGTAATGGACGATCGAATCGAGGCCTTGGAGC
GTGAGCTTGAAGTTGGTGGCGGGAGCAGCAGCAGCGACGATGGAGGTTCG
ATCGCCACACAGAGCGAAGATGGCCATGACGGATCAGGAGAGGACGACCA
CCACGGTGATAATGCAAAGCGGCGAGTACTCAAGCTTGGGTCTCCTCTTG
AGGCCGACAAGATCCAACCGTTGCCTGCGCATCTCTTGCCGCGACCCGGT
TGTGGCGTGTCCAAGGCGAAGAAGCCGGGAAAGAAGGGCCCTAAACGGCC
CAAGGTGGCCGCCTCTTCGCAATCGGCACCAGGGCCTTCTCAGGGGCTGG
AAAACGCTGTCAGGGAGCTGATGACGAACTATGAGGCCCGGTCGTCTGAG
CGAGTGCCGTTTTACTGCAGGGTCTGCCAGTTCCAGGGAGACAGGTGAAA
GGAGAAAGAGGAGGGAGGGCCGGGCCGTAAGAGGGCCAGTAGTCTCGGAG
TTTCTGCTAGAGTTGACGTAATGGACGATCGAATCGAGGCCTTGGAGCGT
GAGCTTGAAGTTGGTGGCGGGAGCAGCAGCAGCGACGATGGAGGTTCGAT
CGCCACACAGAGCGAAGATGGCCATGACGGATCAGGAGAGGACGACCACC
ACGGTGATAATGCAAAGCGGCGAGTACTCAAGCTTGGGTCTCCTCTTGAG
GCCGACAAGATCCAACCGTTGCCTGCGCATCTCTTGCCGCGACCCGGTTG
TGGCGTGTCCAAGGCGAAGAAGCCGGGAAAGAAGGGCCCTAAACGGCCCA
AGGTGGCCGCCTCTTCGCAATCGGCACCAGGGCCTTCTCAGGGGCTGGAA
AACGCTGTCAGGGAGCTGATGACGAACTATGAGGCCCGGTCGTCTGAGCG
AGTGCCGTTTTACTGCAGGGTCTGCCAGTTCCAGGGAGACAGGTGA
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