mRNA_M-pyrifera_M_contig13583.6007.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13583.6007.1
Unique NamemRNA_M-pyrifera_M_contig13583.6007.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig13583.6007.1 vs. uniprot
Match: A0A7S2CUR5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CUR5_9STRA)

HSP 1 Score: 103 bits (256), Expect = 4.080e-26
Identity = 45/59 (76.27%), Postives = 52/59 (88.14%), Query Frame = 1 
Query:    1 PQVITGSHDCQIKLWDLVAGKAMTTLTHHKKAVRAVKMHPKEFSFVSAAADNMKKWQVR 177
            PQ+ITGSHDCQ++LWDL AGK M TLT+HKKAVR +  HP+EFSFVSAAADN+KKWQ R
Sbjct:   21 PQIITGSHDCQVRLWDLAAGKTMATLTNHKKAVRCLASHPREFSFVSAAADNLKKWQTR 79
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BLAST of mRNA_M-pyrifera_M_contig13583.6007.1 vs. uniprot
Match: UPI0010367DFB (protein pleiotropic regulatory locus 1-like n=1 Tax=Camellia sinensis TaxID=4442 RepID=UPI0010367DFB)

HSP 1 Score: 85.9 bits (211), Expect = 3.140e-20
Identity = 40/60 (66.67%), Postives = 48/60 (80.00%), Query Frame = 1 
Query:    1 PQVITGSHDCQIKLWDLVAGKAMTTLTHHKKAVRAVKMHPKEFSFVSAAADNMKKWQVRK 180
            PQV+TGSHD  IK WDL  GK MTTLTHHKK+VRA+ +HPKE  F SA+ADN+KK+ + K
Sbjct:   46 PQVVTGSHDTTIKFWDLRFGKTMTTLTHHKKSVRAMALHPKENCFASASADNIKKFNLPK 105
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BLAST of mRNA_M-pyrifera_M_contig13583.6007.1 vs. uniprot
Match: A0A8K0I6C4_COCNU (Protein pleiotropic regulatory locus 1 n=1 Tax=Cocos nucifera TaxID=13894 RepID=A0A8K0I6C4_COCNU)

HSP 1 Score: 89.4 bits (220), Expect = 1.860e-19
Identity = 40/58 (68.97%), Postives = 49/58 (84.48%), Query Frame = 1 
Query:    1 PQVITGSHDCQIKLWDLVAGKAMTTLTHHKKAVRAVKMHPKEFSFVSAAADNMKKWQV 174
            PQV+TGSHD  IK WDL AGK+M TLTHHKK+VRA+ +HPKE SF SA+ADN+KK+ +
Sbjct:  151 PQVVTGSHDTTIKFWDLAAGKSMATLTHHKKSVRAMALHPKEQSFTSASADNIKKFSL 208
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BLAST of mRNA_M-pyrifera_M_contig13583.6007.1 vs. uniprot
Match: A0A4S4DSP7_CAMSI (Uncharacterized protein n=1 Tax=Camellia sinensis var. sinensis TaxID=542762 RepID=A0A4S4DSP7_CAMSI)

HSP 1 Score: 85.9 bits (211), Expect = 3.390e-19
Identity = 40/60 (66.67%), Postives = 48/60 (80.00%), Query Frame = 1 
Query:    1 PQVITGSHDCQIKLWDLVAGKAMTTLTHHKKAVRAVKMHPKEFSFVSAAADNMKKWQVRK 180
            PQV+TGSHD  IK WDL  GK MTTLTHHKK+VRA+ +HPKE  F SA+ADN+KK+ + K
Sbjct:  146 PQVVTGSHDTTIKFWDLRFGKTMTTLTHHKKSVRAMALHPKENCFASASADNIKKFNLPK 205
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BLAST of mRNA_M-pyrifera_M_contig13583.6007.1 vs. uniprot
Match: UPI000C6CA6DA (pleiotropic regulator 1-like n=1 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6CA6DA)

HSP 1 Score: 84.0 bits (206), Expect = 1.390e-18
Identity = 36/57 (63.16%), Postives = 47/57 (82.46%), Query Frame = 1 
Query:    1 PQVITGSHDCQIKLWDLVAGKAMTTLTHHKKAVRAVKMHPKEFSFVSAAADNMKKWQ 171
            PQV+TGSHDC I+LWDLVAGK+  TLT HKK+VRA+ +HP+ + F S A DN+K+W+
Sbjct:   27 PQVMTGSHDCTIRLWDLVAGKSRVTLTQHKKSVRALLIHPRLYMFASGAPDNIKQWK 83
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BLAST of mRNA_M-pyrifera_M_contig13583.6007.1 vs. uniprot
Match: H9LIG0_CRAAR (Pleiotropic regulator 1 (Fragment) n=1 Tax=Crassostrea ariakensis TaxID=94323 RepID=H9LIG0_CRAAR)

HSP 1 Score: 83.2 bits (204), Expect = 1.840e-18
Identity = 34/57 (59.65%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:    1 PQVITGSHDCQIKLWDLVAGKAMTTLTHHKKAVRAVKMHPKEFSFVSAAADNMKKWQ 171
            PQVITGSHDC I+LWDL  G++  TLT+HK++VRA+ +HPK ++F SA+ DN+K+W+
Sbjct:    8 PQVITGSHDCTIRLWDLAMGRSRVTLTNHKRSVRALSLHPKLYTFASASPDNIKQWK 64
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BLAST of mRNA_M-pyrifera_M_contig13583.6007.1 vs. uniprot
Match: M5CDX9_THACB (Rhizoctonia solani AG1-IB WGS project CAOJ00000000 data, isolate 7/3/14, contig 25544 n=1 Tax=Thanatephorus cucumeris (strain AG1-IB / isolate 7/3/14) TaxID=1108050 RepID=M5CDX9_THACB)

HSP 1 Score: 83.2 bits (204), Expect = 1.880e-18
Identity = 39/59 (66.10%), Postives = 48/59 (81.36%), Query Frame = 1 
Query:    1 PQVITGSHDCQIKLWDLVAGKAMTTLTHHKKAVRAVKMHPKEFSFVSAAA--DNMKKWQ 171
            PQVITGS D  ++LWDL AGK MTTLTHHKK+VRA+ +HP EFSF S +A  +N+KKW+
Sbjct:   27 PQVITGSMDSTVRLWDLAAGKTMTTLTHHKKSVRALAVHPTEFSFASGSAGGNNIKKWK 85
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BLAST of mRNA_M-pyrifera_M_contig13583.6007.1 vs. uniprot
Match: A0A2G9T4W0_TELCI (WD domain, G-beta repeat protein n=1 Tax=Teladorsagia circumcincta TaxID=45464 RepID=A0A2G9T4W0_TELCI)

HSP 1 Score: 80.1 bits (196), Expect = 4.940e-18
Identity = 33/57 (57.89%), Postives = 47/57 (82.46%), Query Frame = 1 
Query:    1 PQVITGSHDCQIKLWDLVAGKAMTTLTHHKKAVRAVKMHPKEFSFVSAAADNMKKWQ 171
            PQVIT SHD  ++LWDL AG+++ TLTHHKK+VR++ +HP+ F F SA+ DN+K+W+
Sbjct:   27 PQVITASHDSTVRLWDLAAGRSICTLTHHKKSVRSLVLHPRLFMFASASPDNIKQWK 83
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BLAST of mRNA_M-pyrifera_M_contig13583.6007.1 vs. uniprot
Match: A0A433A0I7_9FUNG (Pre-mRNA-splicing factor prp46 n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433A0I7_9FUNG)

HSP 1 Score: 83.2 bits (204), Expect = 5.120e-18
Identity = 37/57 (64.91%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:    1 PQVITGSHDCQIKLWDLVAGKAMTTLTHHKKAVRAVKMHPKEFSFVSAAADNMKKWQ 171
            PQVIT S D  I+LWDL AGK M TLTHHKK+VR + +HP EF+F SA+ADN+K W+
Sbjct:   27 PQVITASMDSTIRLWDLAAGKTMATLTHHKKSVRGLALHPTEFAFASASADNIKTWK 83
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BLAST of mRNA_M-pyrifera_M_contig13583.6007.1 vs. uniprot
Match: A0A3P8UUV2_CYNSE (Pleiotropic regulator 1 n=2 Tax=Cynoglossus semilaevis TaxID=244447 RepID=A0A3P8UUV2_CYNSE)

HSP 1 Score: 84.3 bits (207), Expect = 1.630e-17
Identity = 34/57 (59.65%), Postives = 49/57 (85.96%), Query Frame = 1 
Query:    1 PQVITGSHDCQIKLWDLVAGKAMTTLTHHKKAVRAVKMHPKEFSFVSAAADNMKKWQ 171
            PQ+ITGSHD  I+LWDL+AGK   TLT+HKK+VR+V +HP++++F S +ADN+K+W+
Sbjct:  337 PQIITGSHDSTIRLWDLIAGKTRATLTNHKKSVRSVVLHPRQYTFASGSADNIKQWK 393
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13583.6007.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2CUR5_9STRA4.080e-2676.27Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
UPI0010367DFB3.140e-2066.67protein pleiotropic regulatory locus 1-like n=1 Ta... [more]
A0A8K0I6C4_COCNU1.860e-1968.97Protein pleiotropic regulatory locus 1 n=1 Tax=Coc... [more]
A0A4S4DSP7_CAMSI3.390e-1966.67Uncharacterized protein n=1 Tax=Camellia sinensis ... [more]
UPI000C6CA6DA1.390e-1863.16pleiotropic regulator 1-like n=1 Tax=Centruroides ... [more]
H9LIG0_CRAAR1.840e-1859.65Pleiotropic regulator 1 (Fragment) n=1 Tax=Crassos... [more]
M5CDX9_THACB1.880e-1866.10Rhizoctonia solani AG1-IB WGS project CAOJ00000000... [more]
A0A2G9T4W0_TELCI4.940e-1857.89WD domain, G-beta repeat protein n=1 Tax=Teladorsa... [more]
A0A433A0I7_9FUNG5.120e-1864.91Pre-mRNA-splicing factor prp46 n=1 Tax=Jimgerdeman... [more]
A0A3P8UUV2_CYNSE1.630e-1759.65Pleiotropic regulator 1 n=2 Tax=Cynoglossus semila... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13583contigM-pyrifera_M_contig13583:1024..1221 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score91.7
Seed ortholog evalue1.4e-16
Seed eggNOG ortholog4641.GSMUA_Achr8P10200_001
KEGG koko:K12862
KEGG Pathwayko03040,map03040
KEGG ModuleM00353,M00355
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000151,GO:0000375,GO:0000377,GO:0000398,GO:0000974,GO:0002218,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0006139,GO:0006355,GO:0006396,GO:0006397,GO:0006508,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0007154,GO:0007165,GO:0007275,GO:0008150,GO:0008152,GO:0008380,GO:0009605,GO:0009607,GO:0009617,GO:0009620,GO:0009719,GO:0009725,GO:0009743,GO:0009746,GO:0009749,GO:0009755,GO:0009756,GO:0009790,GO:0009791,GO:0009793,GO:0009870,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010033,GO:0010154,GO:0010182,GO:0010204,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0019219,GO:0019222,GO:0019538,GO:0022414,GO:0022622,GO:0023052,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031347,GO:0031349,GO:0031461,GO:0032501,GO:0032502,GO:0032870,GO:0032991,GO:0034284,GO:0034641,GO:0042221,GO:0042742,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045088,GO:0045089,GO:0045892,GO:0045934,GO:0046483,GO:0048316,GO:0048364,GO:0048366,GO:0048367,GO:0048518,GO:0048519,GO:0048523,GO:0048583,GO:0048584,GO:0048608,GO:0048731,GO:0048825,GO:0048827,GO:0048856,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050832,GO:0050896,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0061458,GO:0065007,GO:0070887,GO:0071011,GO:0071013,GO:0071310,GO:0071322,GO:0071495,GO:0071704,GO:0080008,GO:0080090,GO:0080134,GO:0090304,GO:0098542,GO:0099402,GO:1901360,GO:1901564,GO:1901700,GO:1901701,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1990234,GO:1990904,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.Protein pleiotropic regulatory locus
EggNOG OGs37JIT@33090,3GF9J@35493,3KWTB@4447,KOG0285@1,KOG0285@2759
COG Functional cat.A
Best tax levelLiliopsida
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041,ko03400
Exons1
Model size198
Cds size198
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815820.9580023-CDS-M-pyrifera_M_contig13583:1023..12211622815820.9580023-CDS-M-pyrifera_M_contig13583:1023..1221Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13583 1024..1221 -
1692277588.0812337-CDS-M-pyrifera_M_contig13583:1023..12211692277588.0812337-CDS-M-pyrifera_M_contig13583:1023..1221Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13583 1024..1221 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13583.6007.1prot_M-pyrifera_M_contig13583.6007.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13583 1024..1221 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13583.6007.1

>prot_M-pyrifera_M_contig13583.6007.1 ID=prot_M-pyrifera_M_contig13583.6007.1|Name=mRNA_M-pyrifera_M_contig13583.6007.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=66bp
PQVITGSHDCQIKLWDLVAGKAMTTLTHHKKAVRAVKMHPKEFSFVSAAA
DNMKKWQVRKLKQRA*
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mRNA from alignment at M-pyrifera_M_contig13583:1024..1221-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13583.6007.1 ID=mRNA_M-pyrifera_M_contig13583.6007.1|Name=mRNA_M-pyrifera_M_contig13583.6007.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=198bp|location=Sequence derived from alignment at M-pyrifera_M_contig13583:1024..1221- (Macrocystis pyrifera P11B4 male)
CCACAGGTGATCACCGGGTCGCACGATTGCCAGATCAAGCTGTGGGATCT
GGTAGCGGGGAAGGCGATGACGACGCTGACCCACCACAAGAAGGCCGTGC
GGGCCGTCAAAATGCACCCCAAGGAGTTCAGCTTCGTGTCGGCGGCCGCG
GATAACATGAAGAAGTGGCAGGTGAGGAAACTCAAGCAACGCGCATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13583:1024..1221-

>mRNA_M-pyrifera_M_contig13583.6007.1 ID=mRNA_M-pyrifera_M_contig13583.6007.1|Name=mRNA_M-pyrifera_M_contig13583.6007.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig13583:1024..1221- (Macrocystis pyrifera P11B4 male)
CCACAGGTGATCACCGGGTCGCACGATTGCCAGATCAAGCTGTGGGATCT
GGTAGCGGGGAAGGCGATGACGACGCTGACCCACCACAAGAAGGCCGTGC
GGGCCGTCAAAATGCACCCCAAGGAGTTCAGCTTCGTGTCGGCGGCCGCG
GATAACATGAAGAAGTGGCAGGTGAGGAAACTCAAGCAACGCGCATAACC
ACAGGTGATCACCGGGTCGCACGATTGCCAGATCAAGCTGTGGGATCTGG
TAGCGGGGAAGGCGATGACGACGCTGACCCACCACAAGAAGGCCGTGCGG
GCCGTCAAAATGCACCCCAAGGAGTTCAGCTTCGTGTCGGCGGCCGCGGA
TAACATGAAGAAGTGGCAGGTGAGGAAACTCAAGCAACGCGCATAA
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