mRNA_M-pyrifera_M_contig13576.6004.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13576.6004.1
Unique NamemRNA_M-pyrifera_M_contig13576.6004.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig13576.6004.1 vs. uniprot
Match: D7FH75_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH75_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 3.840e-16
Identity = 37/49 (75.51%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:    1 GSSKEQFVPPFVLPKLPSRVYVRFGEPVSLERLDRSDRAACQETYEQVK 147
            GSSKEQFV P VLPKLPSRVYVRFGE ++LE LD+SD+ ACQ  YE VK
Sbjct:   31 GSSKEQFVSPLVLPKLPSRVYVRFGEAITLEGLDKSDKKACQGAYETVK 79
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13576.6004.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FH75_ECTSI3.840e-1675.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13576contigM-pyrifera_M_contig13576:8126..8281 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-00_000230.1
Exons1
Model size156
Cds size156
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815820.733068-CDS-M-pyrifera_M_contig13576:8125..82811622815820.733068-CDS-M-pyrifera_M_contig13576:8125..8281Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13576 8126..8281 +
1692277587.9673326-CDS-M-pyrifera_M_contig13576:8125..82811692277587.9673326-CDS-M-pyrifera_M_contig13576:8125..8281Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13576 8126..8281 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13576.6004.1prot_M-pyrifera_M_contig13576.6004.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13576 8126..8281 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13576.6004.1

>prot_M-pyrifera_M_contig13576.6004.1 ID=prot_M-pyrifera_M_contig13576.6004.1|Name=mRNA_M-pyrifera_M_contig13576.6004.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=52bp
GSSKEQFVPPFVLPKLPSRVYVRFGEPVSLERLDRSDRAACQETYEQVKV
Y*
back to top

mRNA from alignment at M-pyrifera_M_contig13576:8126..8281+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13576.6004.1 ID=mRNA_M-pyrifera_M_contig13576.6004.1|Name=mRNA_M-pyrifera_M_contig13576.6004.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=156bp|location=Sequence derived from alignment at M-pyrifera_M_contig13576:8126..8281+ (Macrocystis pyrifera P11B4 male)
GGGAGTTCCAAGGAGCAGTTTGTGCCGCCCTTCGTGCTGCCCAAGCTCCC
TTCCCGGGTGTACGTCCGCTTTGGCGAGCCGGTTAGCCTGGAAAGGCTCG
ACAGGAGCGACAGGGCCGCTTGCCAAGAGACATACGAGCAAGTAAAGGTA
TACTAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig13576:8126..8281+

>mRNA_M-pyrifera_M_contig13576.6004.1 ID=mRNA_M-pyrifera_M_contig13576.6004.1|Name=mRNA_M-pyrifera_M_contig13576.6004.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig13576:8126..8281+ (Macrocystis pyrifera P11B4 male)
GGGAGTTCCAAGGAGCAGTTTGTGCCGCCCTTCGTGCTGCCCAAGCTCCC
TTCCCGGGTGTACGTCCGCTTTGGCGAGCCGGTTAGCCTGGAAAGGCTCG
ACAGGAGCGACAGGGCCGCTTGCCAAGAGACATACGAGCAAGTAAAGGTA
TACTAAGGGAGTTCCAAGGAGCAGTTTGTGCCGCCCTTCGTGCTGCCCAA
GCTCCCTTCCCGGGTGTACGTCCGCTTTGGCGAGCCGGTTAGCCTGGAAA
GGCTCGACAGGAGCGACAGGGCCGCTTGCCAAGAGACATACGAGCAAGTA
AAGGTATACTAA
back to top