mRNA_M-pyrifera_M_contig13576.6003.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13576.6003.1
Unique NamemRNA_M-pyrifera_M_contig13576.6003.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig13576.6003.1 vs. uniprot
Match: E1Z887_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z887_CHLVA)

HSP 1 Score: 88.6 bits (218), Expect = 7.770e-19
Identity = 40/72 (55.56%), Postives = 53/72 (73.61%), Query Frame = 1
Query:    7 CYRYRGEEYKLFWPEKGEFVRLAAASGAIIIPFSAVGIADSLEMILDGDQLLEVPYVGNRLRKQNEGTPSAR 222
             Y+ RGEEY+LFWPEK EF+R+AA  GA I+PF+AVG+ DSL ++ D  QL  +P VG+ LR++  G P AR
Sbjct:  650 AYKRRGEEYRLFWPEKSEFIRMAARFGATIVPFAAVGVDDSLNILADSQQLEAMPVVGDMLRRRAGGLPQAR 721          
BLAST of mRNA_M-pyrifera_M_contig13576.6003.1 vs. uniprot
Match: A0A7S1HX58_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1HX58_9EUGL)

HSP 1 Score: 85.9 bits (211), Expect = 6.180e-18
Identity = 39/72 (54.17%), Postives = 53/72 (73.61%), Query Frame = 1
Query:    7 CYRYRGEEYKLFWPEKGEFVRLAAASGAIIIPFSAVGIADSLEMILDGDQLLEVPYVGNRLRKQNEGTPSAR 222
             Y+ +GEEY+L WP K EFVRLA+  GA IIP SA+G  D LEM+LD + LL +P +G ++R++ EG P+AR
Sbjct:  246 AYKGKGEEYQLIWPTKPEFVRLASRFGATIIPLSAIGADDGLEMLLDSNDLLNLPVIGEQVRRRAEGIPTAR 317          
BLAST of mRNA_M-pyrifera_M_contig13576.6003.1 vs. uniprot
Match: A0A3M7KUL9_AUXPR (Hydrolase_4 domain-containing protein n=4 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A3M7KUL9_AUXPR)

HSP 1 Score: 85.9 bits (211), Expect = 6.820e-18
Identity = 39/72 (54.17%), Postives = 54/72 (75.00%), Query Frame = 1
Query:    7 CYRYRGEEYKLFWPEKGEFVRLAAASGAIIIPFSAVGIADSLEMILDGDQLLEVPYVGNRLRKQNEGTPSAR 222
             Y+ RGEEY+LFWP++ EFVR+AA  GA I+PF+AVGI DSL ++LD  Q+  +P+VG+ LR++    P AR
Sbjct:  462 AYKGRGEEYRLFWPDRSEFVRMAARFGATIVPFAAVGIDDSLNILLDPSQVQALPFVGDALRRRQALLPQAR 533          
BLAST of mRNA_M-pyrifera_M_contig13576.6003.1 vs. uniprot
Match: A0A7S1HX56_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1HX56_9EUGL)

HSP 1 Score: 85.9 bits (211), Expect = 6.900e-18
Identity = 39/72 (54.17%), Postives = 53/72 (73.61%), Query Frame = 1
Query:    7 CYRYRGEEYKLFWPEKGEFVRLAAASGAIIIPFSAVGIADSLEMILDGDQLLEVPYVGNRLRKQNEGTPSAR 222
             Y+ +GEEY+L WP K EFVRLA+  GA IIP SA+G  D LEM+LD + LL +P +G ++R++ EG P+AR
Sbjct:  659 AYKGKGEEYQLIWPTKPEFVRLASRFGATIIPLSAIGADDGLEMLLDSNDLLNLPVIGEQVRRRAEGIPTAR 730          
BLAST of mRNA_M-pyrifera_M_contig13576.6003.1 vs. uniprot
Match: A0A2P6TRL1_CHLSO (Acyltransferase chloroplastic n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TRL1_CHLSO)

HSP 1 Score: 85.5 bits (210), Expect = 9.360e-18
Identity = 38/72 (52.78%), Postives = 53/72 (73.61%), Query Frame = 1
Query:    7 CYRYRGEEYKLFWPEKGEFVRLAAASGAIIIPFSAVGIADSLEMILDGDQLLEVPYVGNRLRKQNEGTPSAR 222
             Y+ RGEEY+LFWPEK EF+R+AA  GA I+PF+AVG+ DSL +I D  QL  +P +G+ ++++  G P AR
Sbjct:  549 AYKRRGEEYQLFWPEKSEFIRMAARFGATIVPFAAVGVDDSLNIIADSQQLEAMPVLGDMVKRRAGGLPQAR 620          
BLAST of mRNA_M-pyrifera_M_contig13576.6003.1 vs. uniprot
Match: A0A2P6V1X8_9CHLO (Acyltransferase chloroplastic n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V1X8_9CHLO)

HSP 1 Score: 85.1 bits (209), Expect = 1.280e-17
Identity = 39/72 (54.17%), Postives = 52/72 (72.22%), Query Frame = 1
Query:    7 CYRYRGEEYKLFWPEKGEFVRLAAASGAIIIPFSAVGIADSLEMILDGDQLLEVPYVGNRLRKQNEGTPSAR 222
             Y+ RGE+Y+LFWPEK EF+R+AA  GA I+PF+AVG+ DSL +I D  QL  +P VG+ LR++    P AR
Sbjct:  639 AYKRRGEDYQLFWPEKSEFIRMAARFGATIVPFAAVGVDDSLNIIADSTQLEALPVVGDALRRRAGSMPQAR 710          
BLAST of mRNA_M-pyrifera_M_contig13576.6003.1 vs. uniprot
Match: A0A7S2QSI7_9EUKA (Hypothetical protein n=1 Tax=Norrisiella sphaerica TaxID=552664 RepID=A0A7S2QSI7_9EUKA)

HSP 1 Score: 80.9 bits (198), Expect = 3.960e-16
Identity = 31/71 (43.66%), Postives = 53/71 (74.65%), Query Frame = 1
Query:   10 YRYRGEEYKLFWPEKGEFVRLAAASGAIIIPFSAVGIADSLEMILDGDQLLEVPYVGNRLRKQNEGTPSAR 222
            Y  +GE+YK+FWP++GEF+R AA   A ++PFSA+G+ADS++M+ D   +L+ P +G+ ++++ +  P AR
Sbjct:  701 YHRKGEDYKVFWPQRGEFIRAAAKHNATVVPFSAIGVADSVQMVADAQDILKTPVLGDNVKQRMQYLPRAR 771          
BLAST of mRNA_M-pyrifera_M_contig13576.6003.1 vs. uniprot
Match: UPI000C1D222B (acyltransferase-like protein At1g54570, chloroplastic isoform X1 n=4 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D222B)

HSP 1 Score: 80.1 bits (196), Expect = 7.360e-16
Identity = 34/62 (54.84%), Postives = 47/62 (75.81%), Query Frame = 1
Query:   19 RGEEYKLFWPEKGEFVRLAAASGAIIIPFSAVGIADSLEMILDGDQLLEVPYVGNRLRKQNE 204
            +GEEYKLFWP++ EFVR+AA  GA I+PF  VG  D  E++LD D L+ +P +G+R+R+ NE
Sbjct:  563 KGEEYKLFWPDQPEFVRMAARFGATIVPFGVVGEDDIAELVLDYDDLMRIPIIGDRIRRDNE 624          
BLAST of mRNA_M-pyrifera_M_contig13576.6003.1 vs. uniprot
Match: A0A7S0RX44_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0RX44_9CHLO)

HSP 1 Score: 77.0 bits (188), Expect = 9.790e-16
Identity = 34/72 (47.22%), Postives = 47/72 (65.28%), Query Frame = 1
Query:    7 CYRYRGEEYKLFWPEKGEFVRLAAASGAIIIPFSAVGIADSLEMILDGDQLLEVPYVGNRLRKQNEGTPSAR 222
             ++ + E+YKL WPE+ EFVR+AA  GA IIPF+AVG  D +  +LDG  L  +P +G  +RK+    P AR
Sbjct:   45 AFKRKDEKYKLLWPERAEFVRMAARFGATIIPFAAVGAEDGVNQVLDGRDLAALPIIGESIRKRASAVPQAR 116          
BLAST of mRNA_M-pyrifera_M_contig13576.6003.1 vs. uniprot
Match: A0A834YFQ2_9MAGN (Hydrolase_4 domain-containing protein n=1 Tax=Tetracentron sinense TaxID=13715 RepID=A0A834YFQ2_9MAGN)

HSP 1 Score: 79.7 bits (195), Expect = 1.000e-15
Identity = 35/68 (51.47%), Postives = 51/68 (75.00%), Query Frame = 1
Query:   19 RGEEYKLFWPEKGEFVRLAAASGAIIIPFSAVGIADSLEMILDGDQLLEVPYVGNRLRKQNEGTPSAR 222
            +GEEYKLFWP++ EFVR+AA  GA I+PF  VG  D +EM+LD + L+ +P+V + ++K NEG+ + R
Sbjct:  553 KGEEYKLFWPDQPEFVRMAARFGATIVPFGVVGEDDIVEMVLDYNDLMRIPFVSDYIKKFNEGSTNIR 620          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13576.6003.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
E1Z887_CHLVA7.770e-1955.56Uncharacterized protein n=1 Tax=Chlorella variabil... [more]
A0A7S1HX58_9EUGL6.180e-1854.17Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A3M7KUL9_AUXPR6.820e-1854.17Hydrolase_4 domain-containing protein n=4 Tax=Auxe... [more]
A0A7S1HX56_9EUGL6.900e-1854.17Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A2P6TRL1_CHLSO9.360e-1852.78Acyltransferase chloroplastic n=1 Tax=Chlorella so... [more]
A0A2P6V1X8_9CHLO1.280e-1754.17Acyltransferase chloroplastic n=1 Tax=Micractinium... [more]
A0A7S2QSI7_9EUKA3.960e-1643.66Hypothetical protein n=1 Tax=Norrisiella sphaerica... [more]
UPI000C1D222B7.360e-1654.84acyltransferase-like protein At1g54570, chloroplas... [more]
A0A7S0RX44_9CHLO9.790e-1647.22Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
A0A834YFQ2_9MAGN1.000e-1551.47Hydrolase_4 domain-containing protein n=1 Tax=Tetr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13576contigM-pyrifera_M_contig13576:5677..6368 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score88.6
Seed ortholog evalue1.3e-15
Seed eggNOG ortholog554065.XP_005850404.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Diacylglycerol acyltransferase
EggNOG OGs2QQUD@2759,34H3H@3041,37RY3@33090,COG0204@1
COG Functional cat.I
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Exons2
Model size222
Cds size222
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815820.6931126-CDS-M-pyrifera_M_contig13576:5676..58041622815820.6931126-CDS-M-pyrifera_M_contig13576:5676..5804Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13576 5677..5804 +
1692277587.9455488-CDS-M-pyrifera_M_contig13576:5676..58041692277587.9455488-CDS-M-pyrifera_M_contig13576:5676..5804Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13576 5677..5804 +
1622815820.7033856-CDS-M-pyrifera_M_contig13576:6274..63681622815820.7033856-CDS-M-pyrifera_M_contig13576:6274..6368Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13576 6275..6368 +
1692277587.956443-CDS-M-pyrifera_M_contig13576:6274..63681692277587.956443-CDS-M-pyrifera_M_contig13576:6274..6368Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13576 6275..6368 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13576.6003.1prot_M-pyrifera_M_contig13576.6003.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13576 5677..6368 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13576.6003.1

>prot_M-pyrifera_M_contig13576.6003.1 ID=prot_M-pyrifera_M_contig13576.6003.1|Name=mRNA_M-pyrifera_M_contig13576.6003.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=74bp
MPCYRYRGEEYKLFWPEKGEFVRLAAASGAIIIPFSAVGIADSLEMILDG
DQLLEVPYVGNRLRKQNEGTPSAR
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mRNA from alignment at M-pyrifera_M_contig13576:5677..6368+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13576.6003.1 ID=mRNA_M-pyrifera_M_contig13576.6003.1|Name=mRNA_M-pyrifera_M_contig13576.6003.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=692bp|location=Sequence derived from alignment at M-pyrifera_M_contig13576:5677..6368+ (Macrocystis pyrifera P11B4 male)
ATGCCGTGCTATCGATACAGGGGCGAGGAGTACAAGCTGTTCTGGCCAGA GAAGGGGGAGTTTGTTCGCCTGGCCGCTGCCTCCGGCGCCATCATCATTC CCTTCTCGGCCGTCGGCATTGCGGACAGGTATCGTGCCATTCACTTTCGT CTGCTGTGAAAACCGTACAGCAACAGTAGTACAGAAGCAGTGGCAGTAGT AGTAAACTGCAGTATTAGCAGCAGTAGTAGTGATGGTAGTTGCATAAAGT ATTGGTAGTAAATATTAATAGCGATAATTACAGTAGTAGTACTGCAGTAG CAGTAATTTAGCAGAAATACACAGTACTGTATGCCGACTAGCAGTACCAG TAGTAGCAGAGCAGTTACACATAGTAGGAGCAATAGAAATCGTGGTCGTA GCGGCAGTAGTAGTTGTACTCGTAGTAGTATAGAGAGCAACAGCAGCAGC AGCAGTAGCAGTAGCTGCAGCAGTACCGGACACACAGCAGTTCTAGAACT CCCTGACGCACGTTCCGACTCTATTCCGCCTCCTACCCTTTCCGCCGTCT CCCGCTGTCGCTGACCCGGATGCCCTACGTATGTACGTACTGCTGTAGCC TGGAGATGATTCTGGATGGTGATCAGCTCCTGGAAGTGCCTTATGTGGGA AACCGCCTGAGGAAGCAGAACGAGGGCACGCCGTCTGCCAGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13576:5677..6368+

>mRNA_M-pyrifera_M_contig13576.6003.1 ID=mRNA_M-pyrifera_M_contig13576.6003.1|Name=mRNA_M-pyrifera_M_contig13576.6003.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig13576:5677..6368+ (Macrocystis pyrifera P11B4 male)
ATGCCGTGCTATCGATACAGGGGCGAGGAGTACAAGCTGTTCTGGCCAGA
GAAGGGGGAGTTTGTTCGCCTGGCCGCTGCCTCCGGCGCCATCATCATTC
CCTTCTCGGCCGTCGGCATTGCGGACAGATGCCGTGCTATCGATACAGGG
GCGAGGAGTACAAGCTGTTCTGGCCAGAGAAGGGGGAGTTTGTTCGCCTG
GCCGCTGCCTCCGGCGCCATCATCATTCCCTTCTCGGCCGTCGGCATTGC
GGACAGCCTGGAGATGATTCTGGATGGTGATCAGCTCCTGGAAGTGCCTT
ATGTGGGAAACCGCCTGAGGAAGCAGAACGAGGGCACGCCGTCTGCCAGG
CCTGGAGATGATTCTGGATGGTGATCAGCTCCTGGAAGTGCCTTATGTGG
GAAACCGCCTGAGGAAGCAGAACGAGGGCACGCCGTCTGCCAGG
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