mRNA_M-pyrifera_M_contig13576.6002.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_M-pyrifera_M_contig13576.6002.1
Unique Name	mRNA_M-pyrifera_M_contig13576.6002.1
Type	mRNA
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))

Homology

[Close]

BLAST of mRNA_M-pyrifera_M_contig13576.6002.1 vs. uniprot
Match: D7G4M7_ECTSI (AB hydrolase-1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4M7_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 7.550e-17
Identity = 42/58 (72.41%), Postives = 48/58 (82.76%), Query Frame = 1

Query:    1 LPFVSCSVSPVFFSTKDDGTSVSGLSAVPDTDRS--RPIVFVGNHQLMALDLGVIVER 168
            + F+  SVSPVFFST  DG +VSGLS VPD D+S  RPI+FVGNHQL+ALDLGVIVER
Sbjct:  467 IDFLLKSVSPVFFSTGADGVTVSGLSKVPDGDKSTSRPIIFVGNHQLLALDLGVIVER 524

[Close]

BLAST of mRNA_M-pyrifera_M_contig13576.6002.1 vs. uniprot
Match: A0A835Z8H3_9STRA (Alpha/beta-hydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8H3_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 4.170e-12
Identity = 30/49 (61.22%), Postives = 39/49 (79.59%), Query Frame = 1

Query:   22 VSPVFFSTKDDGTSVSGLSAVPDTDRSRPIVFVGNHQLMALDLGVIVER 168
            VSPVFFST+ DGT V GL A+PD D +RPI+FV NHQ +A+DL +I ++
Sbjct:  376 VSPVFFSTRADGTIVEGLGALPDVDPNRPILFVANHQYLAMDLSLIYDQ 424

[Close]

BLAST of mRNA_M-pyrifera_M_contig13576.6002.1 vs. uniprot
Match: A0A1Y1HUH4_KLENI (Esterase/lipase/thioesterase family protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HUH4_KLENI)

HSP 1 Score: 66.2 bits (160), Expect = 2.720e-11
Identity = 30/55 (54.55%), Postives = 39/55 (70.91%), Query Frame = 1

Query:    1 LPFVSCSVSPVFFSTKDDGTSVSGLSAVPDTDRSRPIVFVGNHQLMALDLGVIVE 165
            + F+  + SPVFFSTK DGT V G   +PD    RP++FVGNHQL A DLG++V+
Sbjct:  426 IEFLQKTTSPVFFSTKSDGTVVQGFDGIPD---DRPLLFVGNHQLFAFDLGLLVD 477

[Close]

BLAST of mRNA_M-pyrifera_M_contig13576.6002.1 vs. uniprot
Match: A0A7S0SGW0_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SGW0_9CHLO)

HSP 1 Score: 64.3 bits (155), Expect = 1.300e-10
Identity = 27/49 (55.10%), Postives = 37/49 (75.51%), Query Frame = 1

Query:   22 VSPVFFSTKDDGTSVSGLSAVPDTDRSRPIVFVGNHQLMALDLGVIVER 168
            VSPVFFST+ DG  + GL AVP  +  RP++FVGNHQ +A+DLG +++ 
Sbjct:  515 VSPVFFSTRADGRIIPGLDAVPLGEGDRPVIFVGNHQTLAVDLGFLIQE 563

[Close]

BLAST of mRNA_M-pyrifera_M_contig13576.6002.1 vs. uniprot
Match: I0Z307_COCSC (Alpha/beta-hydrolase n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z307_COCSC)

HSP 1 Score: 58.5 bits (140), Expect = 1.410e-8
Identity = 28/48 (58.33%), Postives = 35/48 (72.92%), Query Frame = 1

Query:   25 SPVFFSTKDDGTSVSGLSAVPDTDRSRPIVFVGNHQLMALDLGVIVER 168
            SPVFFST  DG    GL  +PD   +RP++FVGNHQ  ALDLG++VE+
Sbjct:  369 SPVFFSTTSDGIVQRGLGNLPD---ARPVLFVGNHQTFALDLGLMVEQ 413

[Close]

BLAST of mRNA_M-pyrifera_M_contig13576.6002.1 vs. uniprot
Match: A0A6S8JAV9_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A6S8JAV9_DUNTE)

HSP 1 Score: 58.2 bits (139), Expect = 1.940e-8
Identity = 27/51 (52.94%), Postives = 36/51 (70.59%), Query Frame = 1

Query:   22 VSPVFFSTKDDGTSVSGLSAVPDT--DRSRPIVFVGNHQLMALDLGVIVER 168
            +SPVFFST +DGT V G+  +      R RP++FVGNHQL ALD+ ++VE 
Sbjct:  438 LSPVFFSTLEDGTVVEGVEGLTPLMQQRERPLLFVGNHQLYALDMNIMVEE 488

[Close]

BLAST of mRNA_M-pyrifera_M_contig13576.6002.1 vs. uniprot
Match: A0A250XIR2_9CHLO (AB hydrolase-1 domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XIR2_9CHLO)

HSP 1 Score: 57.8 bits (138), Expect = 2.650e-8
Identity = 27/48 (56.25%), Postives = 34/48 (70.83%), Query Frame = 1

Query:   25 SPVFFSTKDDGTSVSGLSAVPDTDRSRPIVFVGNHQLMALDLGVIVER 168
            SPVF+ST  DGT V GL  +PD    RP++FVGNHQL A D+ ++VE 
Sbjct:  454 SPVFWSTLPDGTIVEGLDGIPDD--MRPLLFVGNHQLYAQDMNIMVEE 499

[Close]

BLAST of mRNA_M-pyrifera_M_contig13576.6002.1 vs. uniprot
Match: A0A8J9R9F4_9CHLO (Acyltransferase-like protein At1g54570, chloroplastic n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9R9F4_9CHLO)

HSP 1 Score: 57.8 bits (138), Expect = 2.650e-8
Identity = 29/48 (60.42%), Postives = 35/48 (72.92%), Query Frame = 1

Query:   25 SPVFFSTKDDGTSVSGLSAVPDTDRSRPIVFVGNHQLMALDLGVIVER 168
            SPVFFST  DG    GL AVP    +RP++FVGNHQ  ALDLG++VE+
Sbjct:  489 SPVFFSTGKDGRVQRGLGAVP---AARPMLFVGNHQTFALDLGLMVEQ 533

[Close]

BLAST of mRNA_M-pyrifera_M_contig13576.6002.1 vs. uniprot
Match: A0A7S1BH14_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BH14_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 9.240e-8
Identity = 25/49 (51.02%), Postives = 32/49 (65.31%), Query Frame = 1

Query:   22 VSPVFFSTKDDGTSVSGLSAVPDTDRSRPIVFVGNHQLMALDLGVIVER 168
            VSPVFFST   G  V GLS +P  +  +P++FVGNHQ   LDL V++  
Sbjct:  376 VSPVFFSTDQQGRRVRGLSQLPRQEEGKPLLFVGNHQFGGLDLQVLIPE 424

[Close]

BLAST of mRNA_M-pyrifera_M_contig13576.6002.1 vs. uniprot
Match: D7G6D7_ECTSI (Hydrolase_4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6D7_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 2.350e-7
Identity = 23/48 (47.92%), Postives = 33/48 (68.75%), Query Frame = 1

Query:   25 SPVFFSTKDDGTSVSGLSAVPDTDRSRPIVFVGNHQLMALDLGVIVER 168
            SPVFFS  + G    GL +VPD +  R I+FVGNHQL+ +D+ ++V +
Sbjct:  391 SPVFFSVNERGELNHGLGSVPDYEEGRSILFVGNHQLLGIDMPILVRK 438

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig13576.6002.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig13576.6002.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G4M7_ECTSI	7.550e-17	72.41	AB hydrolase-1 domain-containing protein n=2 Tax=E...	[more]
A0A835Z8H3_9STRA	4.170e-12	61.22	Alpha/beta-hydrolase n=1 Tax=Tribonema minus TaxID...	[more]
A0A1Y1HUH4_KLENI	2.720e-11	54.55	Esterase/lipase/thioesterase family protein n=1 Ta...	[more]
A0A7S0SGW0_9CHLO	1.300e-10	55.10	Hypothetical protein n=1 Tax=Mantoniella antarctic...	[more]
I0Z307_COCSC	1.410e-8	58.33	Alpha/beta-hydrolase n=1 Tax=Coccomyxa subellipsoi...	[more]
A0A6S8JAV9_DUNTE	1.940e-8	52.94	Hypothetical protein n=1 Tax=Dunaliella tertiolect...	[more]
A0A250XIR2_9CHLO	2.650e-8	56.25	AB hydrolase-1 domain-containing protein n=1 Tax=C...	[more]
A0A8J9R9F4_9CHLO	2.650e-8	60.42	Acyltransferase-like protein At1g54570, chloroplas...	[more]
A0A7S1BH14_9STRA	9.240e-8	51.02	Hypothetical protein (Fragment) n=1 Tax=Corethron ...	[more]
D7G6D7_ECTSI	2.350e-7	47.92	Hydrolase_4 domain-containing protein n=1 Tax=Ecto...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig13576	contig	M-pyrifera_M_contig13576:675..845 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	82.8
Seed ortholog evalue	5.7e-14
Seed eggNOG ortholog	2880.D7G4M7
Hectar predicted targeting category	no signal peptide or anchor
GOs	GO:0003674,GO:0003824,GO:0004144,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006066,GO:0006629,GO:0006638,GO:0006639,GO:0006641,GO:0006720,GO:0006721,GO:0008150,GO:0008152,GO:0008374,GO:0008610,GO:0009058,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0010287,GO:0016101,GO:0016411,GO:0016740,GO:0016746,GO:0016747,GO:0017144,GO:0019432,GO:0033306,GO:0034308,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046460,GO:0046463,GO:0046486,GO:0071704,GO:1901576,GO:1901615,GO:1903173
EggNOG free text desc.	fatty alcohol metabolic process
EggNOG OGs	2QQUD@2759,COG0204@1
COG Functional cat.	I
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Exons	1
Model size	171
Cds size	171
Stop	1
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815820.6509597-CDS-M-pyrifera_M_contig13576:674..845	1622815820.6509597-CDS-M-pyrifera_M_contig13576:674..845	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig13576 675..845 +
1692277587.9342048-CDS-M-pyrifera_M_contig13576:674..845	1692277587.9342048-CDS-M-pyrifera_M_contig13576:674..845	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig13576 675..845 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig13576.6002.1	prot_M-pyrifera_M_contig13576.6002.1	Macrocystis pyrifera P11B4 male	polypeptide	M-pyrifera_M_contig13576 675..845 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at M-pyrifera_M_contig13576:675..845+
coding sequence from alignment at M-pyrifera_M_contig13576:675..845+

protein sequence of mRNA_M-pyrifera_M_contig13576.6002.1

>prot_M-pyrifera_M_contig13576.6002.1 ID=prot_M-pyrifera_M_contig13576.6002.1|Name=mRNA_M-pyrifera_M_contig13576.6002.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=57bp
LPFVSCSVSPVFFSTKDDGTSVSGLSAVPDTDRSRPIVFVGNHQLMALDL
GVIVER*

mRNA from alignment at M-pyrifera_M_contig13576:675..845+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_M-pyrifera_M_contig13576.6002.1 ID=mRNA_M-pyrifera_M_contig13576.6002.1|Name=mRNA_M-pyrifera_M_contig13576.6002.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=171bp|location=Sequence derived from alignment at M-pyrifera_M_contig13576:675..845+ (Macrocystis pyrifera P11B4 male)
CTTCCATTCGTTTCGTGCAGTGTAAGCCCGGTGTTTTTCTCGACAAAAGA
CGACGGTACGAGCGTTTCGGGACTGTCAGCTGTGCCAGATACGGACCGGT
CCAGGCCAATCGTCTTCGTCGGGAACCATCAACTGATGGCCCTCGATCTC
GGGGTAATAGTCGAAAGGTAA

Coding sequence (CDS) from alignment at M-pyrifera_M_contig13576:675..845+

>mRNA_M-pyrifera_M_contig13576.6002.1 ID=mRNA_M-pyrifera_M_contig13576.6002.1|Name=mRNA_M-pyrifera_M_contig13576.6002.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=342bp|location=Sequence derived from alignment at M-pyrifera_M_contig13576:675..845+ (Macrocystis pyrifera P11B4 male)
CTTCCATTCGTTTCGTGCAGTGTAAGCCCGGTGTTTTTCTCGACAAAAGA
CGACGGTACGAGCGTTTCGGGACTGTCAGCTGTGCCAGATACGGACCGGT
CCAGGCCAATCGTCTTCGTCGGGAACCATCAACTGATGGCCCTCGATCTC
GGGGTAATAGTCGAAAGGTAACTTCCATTCGTTTCGTGCAGTGTAAGCCC
GGTGTTTTTCTCGACAAAAGACGACGGTACGAGCGTTTCGGGACTGTCAG
CTGTGCCAGATACGGACCGGTCCAGGCCAATCGTCTTCGTCGGGAACCAT
CAACTGATGGCCCTCGATCTCGGGGTAATAGTCGAAAGGTAA