mRNA_M-pyrifera_M_contig13507.5978.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13507.5978.1
Unique NamemRNA_M-pyrifera_M_contig13507.5978.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13507.5978.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13507contigM-pyrifera_M_contig13507:227..612 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size386
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815818.6718094-CDS-M-pyrifera_M_contig13507:226..6101622815818.6718094-CDS-M-pyrifera_M_contig13507:226..610Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13507 227..610 +
1692277586.6194026-CDS-M-pyrifera_M_contig13507:226..6101692277586.6194026-CDS-M-pyrifera_M_contig13507:226..610Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13507 227..610 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13507.5978.1prot_M-pyrifera_M_contig13507.5978.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13507 227..610 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13507.5978.1

>prot_M-pyrifera_M_contig13507.5978.1 ID=prot_M-pyrifera_M_contig13507.5978.1|Name=mRNA_M-pyrifera_M_contig13507.5978.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=128bp
GHYLLGRLSRNVRHLRKRDSYRYHTRIQLMIFNVGCQTKRDINQVQPQPR
AYTLMLSRHCLQPSNHETENRFVNPENATAAKLPSRSTHRPSCMVPTVPS
GRFCHSTVLPLYSQHPMRLGNPPSMLVP
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mRNA from alignment at M-pyrifera_M_contig13507:227..612+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13507.5978.1 ID=mRNA_M-pyrifera_M_contig13507.5978.1|Name=mRNA_M-pyrifera_M_contig13507.5978.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=386bp|location=Sequence derived from alignment at M-pyrifera_M_contig13507:227..612+ (Macrocystis pyrifera P11B4 male)
GGACACTATTTATTGGGTCGGCTTTCGCGAAATGTACGACACCTCCGAAA
AAGAGACTCGTACAGGTATCATACACGTATTCAACTGATGATATTCAATG
TCGGATGCCAAACCAAACGAGACATTAACCAAGTACAACCCCAACCTCGT
GCTTATACTTTAATGCTTAGCCGTCACTGCCTTCAGCCCTCAAATCATGA
GACCGAAAATCGTTTCGTCAACCCCGAAAATGCTACCGCCGCAAAGTTGC
CTTCTCGAAGCACCCACCGCCCTTCGTGTATGGTACCTACAGTACCATCA
GGCAGGTTTTGTCACTCTACTGTACTACCATTGTATAGCCAACACCCCAT
GCGGCTCGGCAACCCGCCGTCAATGTTGGTGCCGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13507:227..612+

>mRNA_M-pyrifera_M_contig13507.5978.1 ID=mRNA_M-pyrifera_M_contig13507.5978.1|Name=mRNA_M-pyrifera_M_contig13507.5978.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=768bp|location=Sequence derived from alignment at M-pyrifera_M_contig13507:227..612+ (Macrocystis pyrifera P11B4 male)
GGACACTATTTATTGGGTCGGCTTTCGCGAAATGTACGACACCTCCGAAA
AAGAGACTCGTACAGGTATCATACACGTATTCAACTGATGATATTCAATG
TCGGATGCCAAACCAAACGAGACATTAACCAAGTACAACCCCAACCTCGT
GCTTATACTTTAATGCTTAGCCGTCACTGCCTTCAGCCCTCAAATCATGA
GACCGAAAATCGTTTCGTCAACCCCGAAAATGCTACCGCCGCAAAGTTGC
CTTCTCGAAGCACCCACCGCCCTTCGTGTATGGTACCTACAGTACCATCA
GGCAGGTTTTGTCACTCTACTGTACTACCATTGTATAGCCAACACCCCAT
GCGGCTCGGCAACCCGCCGTCAATGTTGGTGCCGGGACACTATTTATTGG
GTCGGCTTTCGCGAAATGTACGACACCTCCGAAAAAGAGACTCGTACAGG
TATCATACACGTATTCAACTGATGATATTCAATGTCGGATGCCAAACCAA
ACGAGACATTAACCAAGTACAACCCCAACCTCGTGCTTATACTTTAATGC
TTAGCCGTCACTGCCTTCAGCCCTCAAATCATGAGACCGAAAATCGTTTC
GTCAACCCCGAAAATGCTACCGCCGCAAAGTTGCCTTCTCGAAGCACCCA
CCGCCCTTCGTGTATGGTACCTACAGTACCATCAGGCAGGTTTTGTCACT
CTACTGTACTACCATTGTATAGCCAACACCCCATGCGGCTCGGCAACCCG
CCGTCAATGTTGGTGCCG
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