mRNA_M-pyrifera_M_contig13500.5976.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13500.5976.1
Unique NamemRNA_M-pyrifera_M_contig13500.5976.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig13500.5976.1 vs. uniprot
Match: D7FTL5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTL5_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 6.450e-9
Identity = 27/31 (87.10%), Postives = 29/31 (93.55%), Query Frame = 1 
Query:   19 EATFKQELEVIVYCGGGTAGPTGLAVGVGRR 111
            EATF  EL+VIVYCGGGTAGPTGLAVGVGR+
Sbjct:  143 EATFGSELDVIVYCGGGTAGPTGLAVGVGRQ 173
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13500.5976.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FTL5_ECTSI6.450e-987.10Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13500contigM-pyrifera_M_contig13500:8556..8666 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_008700.1
Exons1
Model size111
Cds size111
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815818.498843-CDS-M-pyrifera_M_contig13500:8555..86661622815818.498843-CDS-M-pyrifera_M_contig13500:8555..8666Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13500 8556..8666 +
1692277586.5057945-CDS-M-pyrifera_M_contig13500:8555..86661692277586.5057945-CDS-M-pyrifera_M_contig13500:8555..8666Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13500 8556..8666 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13500.5976.1prot_M-pyrifera_M_contig13500.5976.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13500 8556..8666 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13500.5976.1

>prot_M-pyrifera_M_contig13500.5976.1 ID=prot_M-pyrifera_M_contig13500.5976.1|Name=mRNA_M-pyrifera_M_contig13500.5976.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=37bp
MTTTTTEATFKQELEVIVYCGGGTAGPTGLAVGVGRR
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mRNA from alignment at M-pyrifera_M_contig13500:8556..8666+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13500.5976.1 ID=mRNA_M-pyrifera_M_contig13500.5976.1|Name=mRNA_M-pyrifera_M_contig13500.5976.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=111bp|location=Sequence derived from alignment at M-pyrifera_M_contig13500:8556..8666+ (Macrocystis pyrifera P11B4 male)
ATGACAACCACGACGACAGAGGCGACTTTCAAGCAAGAACTCGAGGTCAT
CGTGTACTGCGGGGGCGGGACTGCGGGGCCGACCGGCCTGGCGGTGGGAG
TCGGACGTCGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13500:8556..8666+

>mRNA_M-pyrifera_M_contig13500.5976.1 ID=mRNA_M-pyrifera_M_contig13500.5976.1|Name=mRNA_M-pyrifera_M_contig13500.5976.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=222bp|location=Sequence derived from alignment at M-pyrifera_M_contig13500:8556..8666+ (Macrocystis pyrifera P11B4 male)
ATGACAACCACGACGACAGAGGCGACTTTCAAGCAAGAACTCGAGGTCAT
CGTGTACTGCGGGGGCGGGACTGCGGGGCCGACCGGCCTGGCGGTGGGAG
TCGGACGTCGAATGACAACCACGACGACAGAGGCGACTTTCAAGCAAGAA
CTCGAGGTCATCGTGTACTGCGGGGGCGGGACTGCGGGGCCGACCGGCCT
GGCGGTGGGAGTCGGACGTCGA
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