mRNA_M-pyrifera_M_contig13499.5974.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13499.5974.1
Unique NamemRNA_M-pyrifera_M_contig13499.5974.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig13499.5974.1 vs. uniprot
Match: D7FRC4_ECTSI (PNPLA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRC4_ECTSI)

HSP 1 Score: 184 bits (468), Expect = 8.200e-54
Identity = 87/117 (74.36%), Postives = 99/117 (84.62%), Query Frame = 1 
Query:    1 DQAKTSFIPRAHNAKILGFVYGMFFIGTFLKESMLECLPVDRVPGMTSIPGRLIVVMSSLLGWGSIRAKEFDNGQELIDALRCSCAIFPLVMPHRFRGKRCFDGFFSEGTSAPTLDD 351
            +QAKTSFIPRAH A+  GFVYGMF+IG FL ES+L CLPV+RV   TS PGRL VV+SS+LGW SIRAKEF +G +LIDALRCSCA FPLV+PH FRGKRCFDG FSEG SAP+LD+
Sbjct:   55 EQAKTSFIPRAHAARFFGFVYGMFYIGQFLLESLLACLPVERVGRNTSPPGRLTVVLSSVLGWKSIRAKEFRDGDDLIDALRCSCACFPLVLPHVFRGKRCFDGVFSEGPSAPSLDE 171
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BLAST of mRNA_M-pyrifera_M_contig13499.5974.1 vs. uniprot
Match: A0A6H5KQY3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQY3_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 3.600e-53
Identity = 86/117 (73.50%), Postives = 99/117 (84.62%), Query Frame = 1 
Query:    1 DQAKTSFIPRAHNAKILGFVYGMFFIGTFLKESMLECLPVDRVPGMTSIPGRLIVVMSSLLGWGSIRAKEFDNGQELIDALRCSCAIFPLVMPHRFRGKRCFDGFFSEGTSAPTLDD 351
            +QAKTSFIPRAH A+  GFVYGMF+IG FL ES+L CLPV+RV   TS PGRL VV+SS+LGW SIRAKEF +G++LIDALRCSCA FPLV+PH FRGKRCFDG FSEG SAP+ D+
Sbjct:   13 EQAKTSFIPRAHAARFFGFVYGMFYIGQFLLESLLACLPVERVGRNTSPPGRLTVVLSSVLGWKSIRAKEFRDGEDLIDALRCSCACFPLVLPHVFRGKRCFDGVFSEGPSAPSFDE 129
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13499.5974.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FRC4_ECTSI8.200e-5474.36PNPLA domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KQY3_9PHAE3.600e-5373.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13499contigM-pyrifera_M_contig13499:5765..6115 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score187.6
Seed ortholog evalue3.4e-45
Seed eggNOG ortholog2880.D7FRC4
KEGG rclassRC00020,RC00037,RC00041,RC00094
KEGG koko:K16816
KEGG ReactionR02250,R02687
KEGG Pathwayko00561,ko01100,ko04714,ko04923,map00561,map01100,map04714,map04923
KEGG ModuleM00098
Hectar predicted targeting categoryother localisation
EggNOG free text desc.triglyceride catabolic process
EggNOG OGsKOG3773@1,KOG3773@2759
Ec32 ortholog descriptionAcyl transferase/acyl hydrolase/lysophospholipase
Ec32 orthologEc-26_002630.1
EC3.1.1.3
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size351
Cds size351
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815818.3431137-CDS-M-pyrifera_M_contig13499:5764..61151622815818.3431137-CDS-M-pyrifera_M_contig13499:5764..6115Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13499 5765..6115 +
1692277586.4056966-CDS-M-pyrifera_M_contig13499:5764..61151692277586.4056966-CDS-M-pyrifera_M_contig13499:5764..6115Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13499 5765..6115 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13499.5974.1prot_M-pyrifera_M_contig13499.5974.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13499 5765..6115 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13499.5974.1

>prot_M-pyrifera_M_contig13499.5974.1 ID=prot_M-pyrifera_M_contig13499.5974.1|Name=mRNA_M-pyrifera_M_contig13499.5974.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=117bp
DQAKTSFIPRAHNAKILGFVYGMFFIGTFLKESMLECLPVDRVPGMTSIP
GRLIVVMSSLLGWGSIRAKEFDNGQELIDALRCSCAIFPLVMPHRFRGKR
CFDGFFSEGTSAPTLDD
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mRNA from alignment at M-pyrifera_M_contig13499:5765..6115+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13499.5974.1 ID=mRNA_M-pyrifera_M_contig13499.5974.1|Name=mRNA_M-pyrifera_M_contig13499.5974.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=351bp|location=Sequence derived from alignment at M-pyrifera_M_contig13499:5765..6115+ (Macrocystis pyrifera P11B4 male)
GATCAAGCGAAGACGAGCTTCATCCCCAGAGCGCACAACGCCAAAATCCT
CGGCTTCGTGTACGGCATGTTCTTTATCGGCACTTTCCTTAAAGAGTCCA
TGCTCGAGTGCCTCCCCGTCGACAGGGTGCCCGGCATGACGTCGATCCCC
GGGAGGCTGATCGTGGTCATGTCCTCCCTCCTTGGCTGGGGGTCCATCCG
CGCGAAGGAGTTCGACAACGGGCAGGAGCTGATTGACGCGCTGCGCTGTT
CCTGCGCGATATTTCCTCTGGTGATGCCCCACAGGTTTCGCGGGAAGCGC
TGCTTTGACGGGTTCTTCTCGGAGGGGACGAGCGCTCCCACCCTCGATGA
C
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13499:5765..6115+

>mRNA_M-pyrifera_M_contig13499.5974.1 ID=mRNA_M-pyrifera_M_contig13499.5974.1|Name=mRNA_M-pyrifera_M_contig13499.5974.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=702bp|location=Sequence derived from alignment at M-pyrifera_M_contig13499:5765..6115+ (Macrocystis pyrifera P11B4 male)
GATCAAGCGAAGACGAGCTTCATCCCCAGAGCGCACAACGCCAAAATCCT
CGGCTTCGTGTACGGCATGTTCTTTATCGGCACTTTCCTTAAAGAGTCCA
TGCTCGAGTGCCTCCCCGTCGACAGGGTGCCCGGCATGACGTCGATCCCC
GGGAGGCTGATCGTGGTCATGTCCTCCCTCCTTGGCTGGGGGTCCATCCG
CGCGAAGGAGTTCGACAACGGGCAGGAGCTGATTGACGCGCTGCGCTGTT
CCTGCGCGATATTTCCTCTGGTGATGCCCCACAGGTTTCGCGGGAAGCGC
TGCTTTGACGGGTTCTTCTCGGAGGGGACGAGCGCTCCCACCCTCGATGA
CGATCAAGCGAAGACGAGCTTCATCCCCAGAGCGCACAACGCCAAAATCC
TCGGCTTCGTGTACGGCATGTTCTTTATCGGCACTTTCCTTAAAGAGTCC
ATGCTCGAGTGCCTCCCCGTCGACAGGGTGCCCGGCATGACGTCGATCCC
CGGGAGGCTGATCGTGGTCATGTCCTCCCTCCTTGGCTGGGGGTCCATCC
GCGCGAAGGAGTTCGACAACGGGCAGGAGCTGATTGACGCGCTGCGCTGT
TCCTGCGCGATATTTCCTCTGGTGATGCCCCACAGGTTTCGCGGGAAGCG
CTGCTTTGACGGGTTCTTCTCGGAGGGGACGAGCGCTCCCACCCTCGATG
AC
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