mRNA_M-pyrifera_M_contig13499.5973.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13499.5973.1
Unique NamemRNA_M-pyrifera_M_contig13499.5973.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13499.5973.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13499contigM-pyrifera_M_contig13499:390..775 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size387
Cds size318
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815818.2914839-CDS-M-pyrifera_M_contig13499:389..7071622815818.2914839-CDS-M-pyrifera_M_contig13499:389..707Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13499 390..707 +
1692277586.3744879-CDS-M-pyrifera_M_contig13499:389..7071692277586.3744879-CDS-M-pyrifera_M_contig13499:389..707Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13499 390..707 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815818.303882-UTR-M-pyrifera_M_contig13499:707..7751622815818.303882-UTR-M-pyrifera_M_contig13499:707..775Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13499 708..775 +
1692277586.3862576-UTR-M-pyrifera_M_contig13499:707..7751692277586.3862576-UTR-M-pyrifera_M_contig13499:707..775Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13499 708..775 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13499.5973.1prot_M-pyrifera_M_contig13499.5973.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13499 390..707 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13499.5973.1

>prot_M-pyrifera_M_contig13499.5973.1 ID=prot_M-pyrifera_M_contig13499.5973.1|Name=mRNA_M-pyrifera_M_contig13499.5973.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=106bp
FFRYFSRPSHLFYFVCLPFFALRFYKQQGVLSKSNPLLCFSSCALVCRVL
APFRCERHVPPAHRQAQDMWILEKLRKRFSCRCSYKSSAHVDSIDRDTPL
GNLRQ*
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mRNA from alignment at M-pyrifera_M_contig13499:390..775+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13499.5973.1 ID=mRNA_M-pyrifera_M_contig13499.5973.1|Name=mRNA_M-pyrifera_M_contig13499.5973.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=386bp|location=Sequence derived from alignment at M-pyrifera_M_contig13499:390..775+ (Macrocystis pyrifera P11B4 male)
TTTTTTCGGTATTTTTCGCGTCCGTCCCACCTCTTCTATTTTGTTTGCCT
TCCGTTTTTTGCGCTACGATTTTACAAGCAGCAAGGAGTGCTGTCTAAAA
GTAACCCCTTGCTGTGCTTTTCGAGCTGTGCGTTGGTTTGTCGTGTTTTA
GCCCCCTTTCGCTGTGAACGACACGTGCCGCCTGCTCATCGACAGGCACA
GGATATGTGGATACTTGAAAAACTGCGGAAGCGGTTCTCTTGTCGCTGTA
GTTATAAGTCGTCAGCTCATGTCGACTCGATTGACCGAGACACGCCCCTG
GGAAACTTGCGGCAATAGTAGTAATACTGCATTTCACTTGTTTGGCTGTT
GCTGGACTCTTTTATGTAAGGGTCGGGACGGGGGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13499:390..775+

>mRNA_M-pyrifera_M_contig13499.5973.1 ID=mRNA_M-pyrifera_M_contig13499.5973.1|Name=mRNA_M-pyrifera_M_contig13499.5973.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig13499:390..775+ (Macrocystis pyrifera P11B4 male)
TTTTTTCGGTATTTTTCGCGTCCGTCCCACCTCTTCTATTTTGTTTGCCT
TCCGTTTTTTGCGCTACGATTTTACAAGCAGCAAGGAGTGCTGTCTAAAA
GTAACCCCTTGCTGTGCTTTTCGAGCTGTGCGTTGGTTTGTCGTGTTTTA
GCCCCCTTTCGCTGTGAACGACACGTGCCGCCTGCTCATCGACAGGCACA
GGATATGTGGATACTTGAAAAACTGCGGAAGCGGTTCTCTTGTCGCTGTA
GTTATAAGTCGTCAGCTCATGTCGACTCGATTGACCGAGACACGCCCCTG
GGAAACTTGCGGCAATAGTTTTTTCGGTATTTTTCGCGTCCGTCCCACCT
CTTCTATTTTGTTTGCCTTCCGTTTTTTGCGCTACGATTTTACAAGCAGC
AAGGAGTGCTGTCTAAAAGTAACCCCTTGCTGTGCTTTTCGAGCTGTGCG
TTGGTTTGTCGTGTTTTAGCCCCCTTTCGCTGTGAACGACACGTGCCGCC
TGCTCATCGACAGGCACAGGATATGTGGATACTTGAAAAACTGCGGAAGC
GGTTCTCTTGTCGCTGTAGTTATAAGTCGTCAGCTCATGTCGACTCGATT
GACCGAGACACGCCCCTGGGAAACTTGCGGCAATAG
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