mRNA_M-pyrifera_M_contig13432.5959.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13432.5959.1
Unique NamemRNA_M-pyrifera_M_contig13432.5959.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig13432.5959.1 vs. uniprot
Match: D8LKJ4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKJ4_ECTSI)

HSP 1 Score: 201 bits (510), Expect = 2.830e-57
Identity = 134/263 (50.95%), Postives = 157/263 (59.70%), Query Frame = 3 
Query:  273 EERVTVSAILRGINECLRRWKAARHEGQGILSRLSNAILLRTHIDSG-------RAPSSGGDGDKIGGTIGGSSTVWGVLANAGTTLSRVSIATEARVRQLHSELSALQDAMLAAAAGTRRHALEARRRIPTA-----GHPVRGGNVATDTAVTAVVAAGATVKPVNDEGADDPI-------AIGGGYGLVDVADAASEVAEMLLKEALVTATVAQGVGK--CQDDREALTAYAASWMMQPYVDERRVKELEVMVG-MARGGR 995
            +ER   +A L  I+ CLRRWKAARHEGQ +L+ LSNA+LLRT++D G       RA + G               VWG LA AGTT+SRVS+ATE R R+LH +LSALQDAM+AAA   RRHA E RRR  +A      H   G +                                    A+GGGY LVDVAD  S+VAEML+KEALVTATV QGVG+   +DDREALT YAA+WMMQPYVD  R+KELEVMVG   RG R
Sbjct:   18 KERQDAAATLDEIDGCLRRWKAARHEGQAVLTDLSNALLLRTYVDKGXXXXXXXRAATDG--------------AVWGALAGAGTTVSRVSVATEHRARRLHGDLSALQDAMVAAAGELRRHAREVRRRWVSARAGGEDHRTSGSSSGAKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVGGGYALVDVADTTSQVAEMLMKEALVTATVVQGVGQEHGRDDREALTVYAAAWMMQPYVDAGRLKELEVMVGGQGRGKR 266
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13432.5959.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKJ4_ECTSI2.830e-5750.95Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13432contigM-pyrifera_M_contig13432:3335..4881 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-16_003180.1
Exons1
Model size1547
Cds size789
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13432.5959.1prot_M-pyrifera_M_contig13432.5959.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13432 3553..4341 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815817.1990318-UTR-M-pyrifera_M_contig13432:3334..35521622815817.1990318-UTR-M-pyrifera_M_contig13432:3334..3552Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13432 3335..3552 +
1692277585.6489265-UTR-M-pyrifera_M_contig13432:3334..35521692277585.6489265-UTR-M-pyrifera_M_contig13432:3334..3552Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13432 3335..3552 +
1622815817.2273505-UTR-M-pyrifera_M_contig13432:4341..48811622815817.2273505-UTR-M-pyrifera_M_contig13432:4341..4881Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13432 4342..4881 +
1692277585.686301-UTR-M-pyrifera_M_contig13432:4341..48811692277585.686301-UTR-M-pyrifera_M_contig13432:4341..4881Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13432 4342..4881 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815817.2123094-CDS-M-pyrifera_M_contig13432:3552..43411622815817.2123094-CDS-M-pyrifera_M_contig13432:3552..4341Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13432 3553..4341 +
1692277585.6703188-CDS-M-pyrifera_M_contig13432:3552..43411692277585.6703188-CDS-M-pyrifera_M_contig13432:3552..4341Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13432 3553..4341 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13432.5959.1

>prot_M-pyrifera_M_contig13432.5959.1 ID=prot_M-pyrifera_M_contig13432.5959.1|Name=mRNA_M-pyrifera_M_contig13432.5959.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=263bp
MSALDANLCGTRVATADSEERVTVSAILRGINECLRRWKAARHEGQGILS
RLSNAILLRTHIDSGRAPSSGGDGDKIGGTIGGSSTVWGVLANAGTTLSR
VSIATEARVRQLHSELSALQDAMLAAAAGTRRHALEARRRIPTAGHPVRG
GNVATDTAVTAVVAAGATVKPVNDEGADDPIAIGGGYGLVDVADAASEVA
EMLLKEALVTATVAQGVGKCQDDREALTAYAASWMMQPYVDERRVKELEV
MVGMARGGRSLP*
back to top

mRNA from alignment at M-pyrifera_M_contig13432:3335..4881+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13432.5959.1 ID=mRNA_M-pyrifera_M_contig13432.5959.1|Name=mRNA_M-pyrifera_M_contig13432.5959.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1547bp|location=Sequence derived from alignment at M-pyrifera_M_contig13432:3335..4881+ (Macrocystis pyrifera P11B4 male)
AGCTCCGCTTTTTTTGGTATCCTTCAGTTTGGCGTCTACCGCGTTTTGTT
GTTGCTGCTGTTGTTGTTTCGGTGTTTCTCTCGACTATTTCAGAGCACTC
TTGAGCTAGGGTAACCCCTTCAGAACTTCACCGACGTTTCGGGGACAAAC
TAATTGGAATTAGAGTCGGAGATACTGTGCAGTAGGGTAGGAGTTGACTC
GGGCGGAGGTAGCGTAAGATGAGTGCTCTCGATGCAAATTTGTGTGGAAC
TCGCGTTGCCACGGCCGACTCGGAGGAGCGCGTCACAGTGAGTGCAATAT
TGAGAGGAATTAACGAATGCCTCCGGCGGTGGAAAGCCGCGCGGCACGAA
GGCCAGGGCATCTTATCGCGGCTCAGCAACGCCATCCTGCTAAGGACCCA
CATAGACAGCGGTCGCGCCCCTTCAAGCGGCGGCGACGGTGATAAAATCG
GCGGTACTATCGGCGGCAGCAGTACCGTGTGGGGAGTGCTAGCAAACGCG
GGCACCACCTTGTCCCGCGTATCCATCGCCACCGAGGCGCGCGTGCGCCA
GCTTCACAGCGAGCTGAGCGCTCTTCAAGACGCGATGCTCGCTGCCGCGG
CAGGCACCCGTCGCCATGCGCTGGAAGCGCGGCGCCGTATCCCGACGGCG
GGGCACCCGGTGCGCGGCGGTAACGTAGCCACCGATACGGCGGTAACGGC
AGTGGTGGCGGCGGGGGCTACGGTAAAGCCGGTCAACGATGAGGGTGCCG
ACGATCCTATCGCGATCGGAGGCGGCTACGGACTGGTGGACGTTGCCGAC
GCCGCATCTGAAGTGGCGGAAATGTTGCTCAAGGAGGCGCTTGTTACGGC
GACCGTTGCGCAAGGGGTCGGCAAGTGCCAGGACGACAGGGAGGCGCTGA
CGGCGTACGCGGCTTCGTGGATGATGCAGCCTTACGTTGACGAGCGGCGA
GTCAAAGAGCTGGAGGTGATGGTTGGGATGGCGAGGGGCGGACGGTCGCT
GCCTTGAAAGAAATATTGGATTGGTGGTGAATTCTTGTCTGATGGTGTAA
TGTGTCTCATAAGTTTTATTTGTTTTGTGGTGTAAATTTTTCTTCCAGTT
CGGGTGCGCAAGAGAGAGAGCAGCTTTCACTGCGATGAGCGTACATTTTT
TTCATATAAAAATATGTGTGCACTACCAGGAGTGGAGTACGAATACGATT
TGTTTGGATTTTTGGCGGGAATTACGCCTCGAGGACATACCCCAACACAG
ACATCAAAACTTGGTACAAGGTCGAATGTCAGTTCTCGTAGCGATGTGTC
GATGCTCCGACAACAGGCAAAATTGGGCAGGTGCTGTCGAGATGCGCCGT
GTTGAAAGATCTCCCTGGGCCTCTCTCTTTTTACAGCTTGCCACCTCGTT
CTGAATCATTTTTATTGACAGCATTCACCTTTGCGACCGCGTTCATTGTG
CTTGGGAGCCGGGAGCTGGGTGCTGGGAACATGCATCTTCCCTTCGCGTT
TGTTTCGTGTCACGAATAATTAAGTATATGCTTTTCGCCGAATAGAC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig13432:3335..4881+

>mRNA_M-pyrifera_M_contig13432.5959.1 ID=mRNA_M-pyrifera_M_contig13432.5959.1|Name=mRNA_M-pyrifera_M_contig13432.5959.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1578bp|location=Sequence derived from alignment at M-pyrifera_M_contig13432:3335..4881+ (Macrocystis pyrifera P11B4 male)
ATGAGTGCTCTCGATGCAAATTTGTGTGGAACTCGCGTTGCCACGGCCGA
CTCGGAGGAGCGCGTCACAGTGAGTGCAATATTGAGAGGAATTAACGAAT
GCCTCCGGCGGTGGAAAGCCGCGCGGCACGAAGGCCAGGGCATCTTATCG
CGGCTCAGCAACGCCATCCTGCTAAGGACCCACATAGACAGCGGTCGCGC
CCCTTCAAGCGGCGGCGACGGTGATAAAATCGGCGGTACTATCGGCGGCA
GCAGTACCGTGTGGGGAGTGCTAGCAAACGCGGGCACCACCTTGTCCCGC
GTATCCATCGCCACCGAGGCGCGCGTGCGCCAGCTTCACAGCGAGCTGAG
CGCTCTTCAAGACGCGATGCTCGCTGCCGCGGCAGGCACCCGTCGCCATG
CGCTGGAAGCGCGGCGCCGTATCCCGACGGCGGGGCACCCGGTGCGCGGC
GGTAACGTAGCCACCGATACGGCGGTAACGGCAGTGGTGGCGGCGGGGGC
TACGGTAAAGCCGGTCAACGATGAGGGTGCCGACGATCCTATCGCGATCG
GAGGCGGCTACGGACTGGTGGACGTTGCCGACGCCGCATCTGAAGTGGCG
GAAATGTTGCTCAAGGAGGCGCTTGTTACGGCGACCGTTGCGCAAGGGGT
CGGCAAGTGCCAGGACGACAGGGAGGCGCTGACGGCGTACGCGGCTTCGT
GGATGATGCAGCCTTACGTTGACGAGCGGCGAGTCAAAGAGCTGGAGGTG
ATGGTTGGGATGGCGAGGGGCGGACGGTCGCTGCCTTGAATGAGTGCTCT
CGATGCAAATTTGTGTGGAACTCGCGTTGCCACGGCCGACTCGGAGGAGC
GCGTCACAGTGAGTGCAATATTGAGAGGAATTAACGAATGCCTCCGGCGG
TGGAAAGCCGCGCGGCACGAAGGCCAGGGCATCTTATCGCGGCTCAGCAA
CGCCATCCTGCTAAGGACCCACATAGACAGCGGTCGCGCCCCTTCAAGCG
GCGGCGACGGTGATAAAATCGGCGGTACTATCGGCGGCAGCAGTACCGTG
TGGGGAGTGCTAGCAAACGCGGGCACCACCTTGTCCCGCGTATCCATCGC
CACCGAGGCGCGCGTGCGCCAGCTTCACAGCGAGCTGAGCGCTCTTCAAG
ACGCGATGCTCGCTGCCGCGGCAGGCACCCGTCGCCATGCGCTGGAAGCG
CGGCGCCGTATCCCGACGGCGGGGCACCCGGTGCGCGGCGGTAACGTAGC
CACCGATACGGCGGTAACGGCAGTGGTGGCGGCGGGGGCTACGGTAAAGC
CGGTCAACGATGAGGGTGCCGACGATCCTATCGCGATCGGAGGCGGCTAC
GGACTGGTGGACGTTGCCGACGCCGCATCTGAAGTGGCGGAAATGTTGCT
CAAGGAGGCGCTTGTTACGGCGACCGTTGCGCAAGGGGTCGGCAAGTGCC
AGGACGACAGGGAGGCGCTGACGGCGTACGCGGCTTCGTGGATGATGCAG
CCTTACGTTGACGAGCGGCGAGTCAAAGAGCTGGAGGTGATGGTTGGGAT
GGCGAGGGGCGGACGGTCGCTGCCTTGA
back to top