mRNA_M-pyrifera_M_contig13414.5953.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13414.5953.1
Unique NamemRNA_M-pyrifera_M_contig13414.5953.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig13414.5953.1 vs. uniprot
Match: D8LI43_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI43_ECTSI)

HSP 1 Score: 192 bits (488), Expect = 4.080e-56
Identity = 137/319 (42.95%), Postives = 160/319 (50.16%), Query Frame = 1 
Query:    1 LAPSAVPQLVLQWLDLASHFRLRESSAFYRDEVPRQTKTLVVRGCETARRCHEKIFTPHK-TRLDSISLDLVSRSVPSSLSSXXXXXXXXXXXSNPIGHGVPSLGGSSGXXXXXXXXXGPGRGGHHVNLAVADILPSLVREHRPVELRVRNILRGGEFSAALLALEESLETVRQDLCVLQLGLATGGPRPYQDPRFHHWCMLRLMLVLGXXXXXXXXXXXXXXXGR-ERKLLKVLAGLSGEL--AVTEGFLVGG--RGFAPPPCGSGGCRDVLEGR--------------ARWPRLRELRLSCGIMGGDLEGLAECLAR 897
            L+P+ V   +LQWLDLASH RLRE+S F RDE PR+T TL  RG E ARRC   IFTP K TRL SI+LD+ + S  SS S             N           SS             R          + LP L+REHRP E+R +N++RG EFS AL +LE +++ VR+ LCVL  GL  GGPRPYQDPR HHWCMLRL  +LG                  E  +   LA L+ EL  A     LV     G      G+G      E R              A WP LREL LSCGIM GDLE LA CL R
Sbjct:    4 LSPNVVEH-ILQWLDLASHLRLREASTFDRDETPRRTTTLAARGSEQARRCQLVIFTPDKKTRLHSITLDVTAPSSGSSSSKCGMEPTQHLSSFN-----------SSFSSFLDEASCAKRR----------NSLPLLIREHRPAEIRFKNMVRGREFSEALRSLELNIDQVRESLCVLDFGLTAGGPRPYQDPRSHHWCMLRLRRLLGPAPLAAVGGAGGGSEDEGEGAVNTELAQLTVELIGAANAAMLVPHLIHGLTGEEQGAGDTPSAEEFRPAAATLGAQVGGLKAYWPCLRELMLSCGIMRGDLEDLAGCLGR 300
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BLAST of mRNA_M-pyrifera_M_contig13414.5953.1 vs. uniprot
Match: A0A6H5KRS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRS6_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 2.670e-31
Identity = 81/184 (44.02%), Postives = 98/184 (53.26%), Query Frame = 1 
Query:  400 LPSLVREHRPVELRVRNILRGGEFSAALLALEESLETVRQDLCVLQLGLATGGPRPYQDPRFHHWCMLRLMLVLGXXXXXXXXXXXXXXXGRER--------KLLKVLAGLSGELAVTEGFLVG------GRGFAP------PPCGSGGCRDVLEGRARWPRLRELRLSCGIMGGDLEGLAECL 891
            LP LVREHRP E+R +N++RGGEFS AL +LE +++ VR+ LCVL  GL  GGPRPYQDPR HHWCMLRL  +LG                 E         +L   L G +    +    + G      G G  P      P     G + V   +A WP LREL LSCGIM GDLE L+ CL
Sbjct:   30 LPLLVREHRPAEIRFKNMVRGGEFSDALRSLELNIDQVRKSLCVLDFGLTAGGPRPYQDPRSHHWCMLRLRRLLGPGPLAEVGDAGGGSEDEEEGAVDTELAQLTVELMGPANAATLVPQLIHGLTGEEEGAGETPSAEEVRPAAAKLGAK-VRGLKAYWPCLRELTLSCGIMRGDLEDLSACL 212
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13414.5953.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LI43_ECTSI4.080e-5642.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KRS6_9PHAE2.670e-3144.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13414contigM-pyrifera_M_contig13414:5355..6254 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-04_003160.1
Exons1
Model size900
Cds size900
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815816.7513707-CDS-M-pyrifera_M_contig13414:5354..62541622815816.7513707-CDS-M-pyrifera_M_contig13414:5354..6254Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13414 5355..6254 -
1692277585.3586848-CDS-M-pyrifera_M_contig13414:5354..62541692277585.3586848-CDS-M-pyrifera_M_contig13414:5354..6254Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13414 5355..6254 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13414.5953.1prot_M-pyrifera_M_contig13414.5953.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13414 5355..6254 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13414.5953.1

>prot_M-pyrifera_M_contig13414.5953.1 ID=prot_M-pyrifera_M_contig13414.5953.1|Name=mRNA_M-pyrifera_M_contig13414.5953.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=300bp
LAPSAVPQLVLQWLDLASHFRLRESSAFYRDEVPRQTKTLVVRGCETARR
CHEKIFTPHKTRLDSISLDLVSRSVPSSLSSSPPSSYSSSSPSNPIGHGV
PSLGGSSGGGGGGGGGSGPGRGGHHVNLAVADILPSLVREHRPVELRVRN
ILRGGEFSAALLALEESLETVRQDLCVLQLGLATGGPRPYQDPRFHHWCM
LRLMLVLGGATAAAAVVGGGEEEGRERKLLKVLAGLSGELAVTEGFLVGG
RGFAPPPCGSGGCRDVLEGRARWPRLRELRLSCGIMGGDLEGLAECLAR*
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mRNA from alignment at M-pyrifera_M_contig13414:5355..6254-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13414.5953.1 ID=mRNA_M-pyrifera_M_contig13414.5953.1|Name=mRNA_M-pyrifera_M_contig13414.5953.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=900bp|location=Sequence derived from alignment at M-pyrifera_M_contig13414:5355..6254- (Macrocystis pyrifera P11B4 male)
CTTGCCCCCTCTGCCGTTCCGCAGCTCGTCCTGCAGTGGCTCGACCTAGC
CTCCCACTTCCGCTTGCGCGAGTCCAGCGCTTTCTACCGCGACGAGGTCC
CGCGGCAAACCAAGACTCTCGTCGTGAGGGGCTGCGAGACGGCGAGGCGC
TGCCACGAAAAAATCTTCACCCCCCACAAGACTCGCCTCGATAGCATATC
CTTGGACCTTGTGAGCCGCTCGGTGCCGTCCTCGCTCTCCTCCTCCCCCC
CCTCCTCCTATTCCTCCTCCTCACCTTCAAACCCTATCGGCCACGGTGTC
CCCAGCCTCGGTGGCAGTAGCGGCGGCGGGGGCGGCGGCGGCGGTGGCAG
CGGTCCCGGCCGCGGCGGGCACCACGTAAACCTTGCCGTGGCGGACATCC
TACCCTCCCTGGTCCGCGAACACCGCCCGGTAGAGCTGAGGGTCCGCAAT
ATCCTCCGGGGGGGCGAGTTCTCGGCCGCGCTTCTCGCGCTCGAGGAGAG
CCTCGAAACGGTCCGCCAAGACCTGTGCGTGCTCCAACTGGGGCTCGCCA
CCGGCGGGCCCCGGCCCTATCAGGACCCCCGGTTCCACCACTGGTGCATG
CTGCGGCTCATGCTCGTGCTGGGAGGCGCGACGGCCGCCGCCGCCGTTGT
CGGTGGTGGTGAGGAAGAGGGGAGGGAAAGAAAGCTGCTGAAGGTGCTCG
CGGGCCTGTCGGGGGAGCTGGCCGTGACTGAGGGGTTCCTGGTTGGGGGC
CGCGGGTTCGCGCCGCCGCCGTGCGGTAGTGGGGGTTGCAGGGATGTTCT
CGAGGGCAGGGCGCGCTGGCCTCGCCTGAGAGAGCTTCGGCTGTCGTGCG
GCATCATGGGTGGGGATCTGGAAGGTCTGGCGGAGTGCCTGGCGAGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13414:5355..6254-

>mRNA_M-pyrifera_M_contig13414.5953.1 ID=mRNA_M-pyrifera_M_contig13414.5953.1|Name=mRNA_M-pyrifera_M_contig13414.5953.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1800bp|location=Sequence derived from alignment at M-pyrifera_M_contig13414:5355..6254- (Macrocystis pyrifera P11B4 male)
CTTGCCCCCTCTGCCGTTCCGCAGCTCGTCCTGCAGTGGCTCGACCTAGC
CTCCCACTTCCGCTTGCGCGAGTCCAGCGCTTTCTACCGCGACGAGGTCC
CGCGGCAAACCAAGACTCTCGTCGTGAGGGGCTGCGAGACGGCGAGGCGC
TGCCACGAAAAAATCTTCACCCCCCACAAGACTCGCCTCGATAGCATATC
CTTGGACCTTGTGAGCCGCTCGGTGCCGTCCTCGCTCTCCTCCTCCCCCC
CCTCCTCCTATTCCTCCTCCTCACCTTCAAACCCTATCGGCCACGGTGTC
CCCAGCCTCGGTGGCAGTAGCGGCGGCGGGGGCGGCGGCGGCGGTGGCAG
CGGTCCCGGCCGCGGCGGGCACCACGTAAACCTTGCCGTGGCGGACATCC
TACCCTCCCTGGTCCGCGAACACCGCCCGGTAGAGCTGAGGGTCCGCAAT
ATCCTCCGGGGGGGCGAGTTCTCGGCCGCGCTTCTCGCGCTCGAGGAGAG
CCTCGAAACGGTCCGCCAAGACCTGTGCGTGCTCCAACTGGGGCTCGCCA
CCGGCGGGCCCCGGCCCTATCAGGACCCCCGGTTCCACCACTGGTGCATG
CTGCGGCTCATGCTCGTGCTGGGAGGCGCGACGGCCGCCGCCGCCGTTGT
CGGTGGTGGTGAGGAAGAGGGGAGGGAAAGAAAGCTGCTGAAGGTGCTCG
CGGGCCTGTCGGGGGAGCTGGCCGTGACTGAGGGGTTCCTGGTTGGGGGC
CGCGGGTTCGCGCCGCCGCCGTGCGGTAGTGGGGGTTGCAGGGATGTTCT
CGAGGGCAGGGCGCGCTGGCCTCGCCTGAGAGAGCTTCGGCTGTCGTGCG
GCATCATGGGTGGGGATCTGGAAGGTCTGGCGGAGTGCCTGGCGAGGTGA
CTTGCCCCCTCTGCCGTTCCGCAGCTCGTCCTGCAGTGGCTCGACCTAGC
CTCCCACTTCCGCTTGCGCGAGTCCAGCGCTTTCTACCGCGACGAGGTCC
CGCGGCAAACCAAGACTCTCGTCGTGAGGGGCTGCGAGACGGCGAGGCGC
TGCCACGAAAAAATCTTCACCCCCCACAAGACTCGCCTCGATAGCATATC
CTTGGACCTTGTGAGCCGCTCGGTGCCGTCCTCGCTCTCCTCCTCCCCCC
CCTCCTCCTATTCCTCCTCCTCACCTTCAAACCCTATCGGCCACGGTGTC
CCCAGCCTCGGTGGCAGTAGCGGCGGCGGGGGCGGCGGCGGCGGTGGCAG
CGGTCCCGGCCGCGGCGGGCACCACGTAAACCTTGCCGTGGCGGACATCC
TACCCTCCCTGGTCCGCGAACACCGCCCGGTAGAGCTGAGGGTCCGCAAT
ATCCTCCGGGGGGGCGAGTTCTCGGCCGCGCTTCTCGCGCTCGAGGAGAG
CCTCGAAACGGTCCGCCAAGACCTGTGCGTGCTCCAACTGGGGCTCGCCA
CCGGCGGGCCCCGGCCCTATCAGGACCCCCGGTTCCACCACTGGTGCATG
CTGCGGCTCATGCTCGTGCTGGGAGGCGCGACGGCCGCCGCCGCCGTTGT
CGGTGGTGGTGAGGAAGAGGGGAGGGAAAGAAAGCTGCTGAAGGTGCTCG
CGGGCCTGTCGGGGGAGCTGGCCGTGACTGAGGGGTTCCTGGTTGGGGGC
CGCGGGTTCGCGCCGCCGCCGTGCGGTAGTGGGGGTTGCAGGGATGTTCT
CGAGGGCAGGGCGCGCTGGCCTCGCCTGAGAGAGCTTCGGCTGTCGTGCG
GCATCATGGGTGGGGATCTGGAAGGTCTGGCGGAGTGCCTGGCGAGGTGA
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