mRNA_M-pyrifera_M_contig13305.5908.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13305.5908.1
Unique NamemRNA_M-pyrifera_M_contig13305.5908.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13305.5908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13305contigM-pyrifera_M_contig13305:5785..6097 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size304
Cds size213
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13305.5908.1prot_M-pyrifera_M_contig13305.5908.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13305 5876..6097 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815813.2538068-UTR-M-pyrifera_M_contig13305:5784..58751622815813.2538068-UTR-M-pyrifera_M_contig13305:5784..5875Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13305 5785..5875 -
1692277583.1930203-UTR-M-pyrifera_M_contig13305:5784..58751692277583.1930203-UTR-M-pyrifera_M_contig13305:5784..5875Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13305 5785..5875 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815813.2665265-CDS-M-pyrifera_M_contig13305:5875..59561622815813.2665265-CDS-M-pyrifera_M_contig13305:5875..5956Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13305 5876..5956 -
1692277583.202287-CDS-M-pyrifera_M_contig13305:5875..59561692277583.202287-CDS-M-pyrifera_M_contig13305:5875..5956Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13305 5876..5956 -
1622815813.2781043-CDS-M-pyrifera_M_contig13305:5965..60971622815813.2781043-CDS-M-pyrifera_M_contig13305:5965..6097Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13305 5966..6097 -
1692277583.2110114-CDS-M-pyrifera_M_contig13305:5965..60971692277583.2110114-CDS-M-pyrifera_M_contig13305:5965..6097Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13305 5966..6097 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13305.5908.1

>prot_M-pyrifera_M_contig13305.5908.1 ID=prot_M-pyrifera_M_contig13305.5908.1|Name=mRNA_M-pyrifera_M_contig13305.5908.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=71bp
VRPRCEHIPVQEYHTAAYTWRIPDDDDPPETCVEQPGPVLIVQQPVIAKA
LQISWTDTEVKVTTIHLDSE*
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mRNA from alignment at M-pyrifera_M_contig13305:5785..6097-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13305.5908.1 ID=mRNA_M-pyrifera_M_contig13305.5908.1|Name=mRNA_M-pyrifera_M_contig13305.5908.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=313bp|location=Sequence derived from alignment at M-pyrifera_M_contig13305:5785..6097- (Macrocystis pyrifera P11B4 male)
GTCCGACCGAGGTGTGAACATATTCCAGTACAAGAGTATCATACTGCCGC
ATACACCTGGCGAATCCCTGATGATGATGACCCCCCGGAAACGTGCGTGG
AACAGCCTGGTCCCGTACTGATAGTGCAGCAAGCCCGTAAGCCCGTAATC
GCCAAAGCTTTACAAATCAGCTGGACGGACACAGAGGTAAAAGTTACTAC
AATTCACCTCGACAGCGAATGAGAGAAGAATACACACATCGCAGAGATCA
CCGATCCCCACTTCAAGGTCTAGCTCTTTCAGGCAAGATATACTCCTAAT
CTGTATGGTCTAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13305:5785..6097-

>mRNA_M-pyrifera_M_contig13305.5908.1 ID=mRNA_M-pyrifera_M_contig13305.5908.1|Name=mRNA_M-pyrifera_M_contig13305.5908.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=426bp|location=Sequence derived from alignment at M-pyrifera_M_contig13305:5785..6097- (Macrocystis pyrifera P11B4 male)
GTCCGACCGAGGTGTGAACATATTCCAGTACAAGAGTATCATACTGCCGC
ATACACCTGGCGAATCCCTGATGATGATGACCCCCCGGAAACGTGCGTGG
AACAGCCTGGTCCCGTACTGATAGTGCAGCAAGTCCGACCGAGGTGTGAA
CATATTCCAGTACAAGAGTATCATACTGCCGCATACACCTGGCGAATCCC
TGATGATGATGACCCCCCGGAAACGTGCGTGGAACAGCCTGGTCCCGTAC
TGATAGTGCAGCAACCCGTAATCGCCAAAGCTTTACAAATCAGCTGGACG
GACACAGAGGTAAAAGTTACTACAATTCACCTCGACAGCGAATGACCCGT
AATCGCCAAAGCTTTACAAATCAGCTGGACGGACACAGAGGTAAAAGTTA
CTACAATTCACCTCGACAGCGAATGA
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