mRNA_M-pyrifera_M_contig13289.5904.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13289.5904.1
Unique NamemRNA_M-pyrifera_M_contig13289.5904.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig13289.5904.1 vs. uniprot
Match: D7FJU1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJU1_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 4.850e-33
Identity = 55/59 (93.22%), Postives = 56/59 (94.92%), Query Frame = 1 
Query:    1 FTEFGKWMDGWESRRKRVAGHDWCIIKLGLPGHIGGVMVDTAFFTGNQAPRFSLQGAWI 177
            FTEFGKWMDGWESRRKRVAGHDWCIIKLGLPG I GV VDTAFFTGNQAPRFSLQGAW+
Sbjct:   49 FTEFGKWMDGWESRRKRVAGHDWCIIKLGLPGRIRGVKVDTAFFTGNQAPRFSLQGAWL 107
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BLAST of mRNA_M-pyrifera_M_contig13289.5904.1 vs. uniprot
Match: A0A068TKN5_BLAGE (Allantoate amidinohydrolase (Fragment) n=1 Tax=Blattella germanica TaxID=6973 RepID=A0A068TKN5_BLAGE)

HSP 1 Score: 106 bits (265), Expect = 1.430e-28
Identity = 45/59 (76.27%), Postives = 52/59 (88.14%), Query Frame = 1 
Query:    1 FTEFGKWMDGWESRRKRVAGHDWCIIKLGLPGHIGGVMVDTAFFTGNQAPRFSLQGAWI 177
            FTEFGKWMDGWE+RRKR+ GHDW IIKLG+PG + G+ VDTAFFTGN APRFSLQ A++
Sbjct:    1 FTEFGKWMDGWETRRKRIPGHDWAIIKLGVPGVLHGITVDTAFFTGNYAPRFSLQAAYL 59
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BLAST of mRNA_M-pyrifera_M_contig13289.5904.1 vs. uniprot
Match: A0A7S2TIL5_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TIL5_9EUKA)

HSP 1 Score: 102 bits (254), Expect = 1.900e-26
Identity = 45/59 (76.27%), Postives = 50/59 (84.75%), Query Frame = 1 
Query:    1 FTEFGKWMDGWESRRKRVAGHDWCIIKLGLPGHIGGVMVDTAFFTGNQAPRFSLQGAWI 177
            FT+ GKWMDGWESRRKR AGHDW II+LG PG I GV +DT FFTGNQAPRFSLQ A++
Sbjct:   29 FTDQGKWMDGWESRRKRTAGHDWSIIQLGHPGSIRGVKIDTRFFTGNQAPRFSLQAAYL 87
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BLAST of mRNA_M-pyrifera_M_contig13289.5904.1 vs. uniprot
Match: A0A1Y1KHW0_PHOPY (Allantoate amidinohydrolase n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1KHW0_PHOPY)

HSP 1 Score: 101 bits (251), Expect = 2.290e-26
Identity = 45/55 (81.82%), Postives = 48/55 (87.27%), Query Frame = 1 
Query:    1 FTEFGKWMDGWESRRKRVAGHDWCIIKLGLPGHIGGVMVDTAFFTGNQAPRFSLQ 165
            FT+ GKWMDGWE+RRKRV GHDWCIIKLGL G I G+ VDTAFFTGN APRFSLQ
Sbjct:   52 FTDCGKWMDGWETRRKRVPGHDWCIIKLGLSGLIRGIHVDTAFFTGNYAPRFSLQ 106
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BLAST of mRNA_M-pyrifera_M_contig13289.5904.1 vs. uniprot
Match: A0A836C8W1_9STRA (Galactose-binding domain-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8W1_9STRA)

HSP 1 Score: 107 bits (267), Expect = 2.880e-26
Identity = 45/59 (76.27%), Postives = 52/59 (88.14%), Query Frame = 1 
Query:    1 FTEFGKWMDGWESRRKRVAGHDWCIIKLGLPGHIGGVMVDTAFFTGNQAPRFSLQGAWI 177
            FT +GKWMDGWESRRKR+AGHDWCIIKLGLPG I G+ +DTA FTGN APR S+QGA++
Sbjct:   57 FTPYGKWMDGWESRRKRIAGHDWCIIKLGLPGQIVGIEIDTAHFTGNHAPRASVQGAYL 115
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BLAST of mRNA_M-pyrifera_M_contig13289.5904.1 vs. uniprot
Match: A0A7J7BPR4_9COLE (Allantoate amidinohydrolase n=1 Tax=Abscondita terminalis TaxID=2069292 RepID=A0A7J7BPR4_9COLE)

HSP 1 Score: 106 bits (264), Expect = 5.450e-26
Identity = 46/59 (77.97%), Postives = 51/59 (86.44%), Query Frame = 1 
Query:    1 FTEFGKWMDGWESRRKRVAGHDWCIIKLGLPGHIGGVMVDTAFFTGNQAPRFSLQGAWI 177
            FTE+GKWMDGWE+RRKR+ GHDWCIIKLG PG I G+ VDTAFFTGN APRFS+Q A I
Sbjct:   51 FTEYGKWMDGWETRRKRLPGHDWCIIKLGTPGIIHGIEVDTAFFTGNYAPRFSIQAAHI 109
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BLAST of mRNA_M-pyrifera_M_contig13289.5904.1 vs. uniprot
Match: A0A8J5EBZ4_9DIPT (Allantoate amidinohydrolase n=2 Tax=Bradysia TaxID=35571 RepID=A0A8J5EBZ4_9DIPT)

HSP 1 Score: 105 bits (262), Expect = 1.090e-25
Identity = 43/59 (72.88%), Postives = 52/59 (88.14%), Query Frame = 1 
Query:    1 FTEFGKWMDGWESRRKRVAGHDWCIIKLGLPGHIGGVMVDTAFFTGNQAPRFSLQGAWI 177
            FTE+GKWMDGWE+RRKR+ GHDWCI+KLG P +I G++VDTAFFTGN APR S+QGA +
Sbjct:   54 FTEYGKWMDGWETRRKRIPGHDWCIVKLGAPCNIKGILVDTAFFTGNYAPRISIQGACL 112
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BLAST of mRNA_M-pyrifera_M_contig13289.5904.1 vs. uniprot
Match: A0A485KSZ2_9STRA (Aste57867_10812 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KSZ2_9STRA)

HSP 1 Score: 104 bits (260), Expect = 2.070e-25
Identity = 45/57 (78.95%), Postives = 50/57 (87.72%), Query Frame = 1 
Query:    1 FTEFGKWMDGWESRRKRVAGHDWCIIKLGLPGHIGGVMVDTAFFTGNQAPRFSLQGA 171
            FTEFGKWMDGWESRRKR+AGHDWCI++LGL G I G+ VDTAFFTGN APR S+Q A
Sbjct:   46 FTEFGKWMDGWESRRKRIAGHDWCILQLGLRGKITGIEVDTAFFTGNNAPRVSIQAA 102
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BLAST of mRNA_M-pyrifera_M_contig13289.5904.1 vs. uniprot
Match: UPI001CF5012F (LOW QUALITY PROTEIN: allantoicase-like n=2 Tax=Acropora TaxID=6127 RepID=UPI001CF5012F)

HSP 1 Score: 103 bits (258), Expect = 4.960e-25
Identity = 43/59 (72.88%), Postives = 51/59 (86.44%), Query Frame = 1 
Query:    1 FTEFGKWMDGWESRRKRVAGHDWCIIKLGLPGHIGGVMVDTAFFTGNQAPRFSLQGAWI 177
            FT FGKWMDGWE+RRKR+ GHDWC+IKLG+PG I G+ VDTAFFTGN  PR S+QGA++
Sbjct:   57 FTSFGKWMDGWETRRKRIPGHDWCVIKLGIPGVIKGLHVDTAFFTGNFPPRVSVQGAYV 115
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BLAST of mRNA_M-pyrifera_M_contig13289.5904.1 vs. uniprot
Match: A0A7S4DWW2_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DWW2_9EUKA)

HSP 1 Score: 103 bits (257), Expect = 5.750e-25
Identity = 46/59 (77.97%), Postives = 50/59 (84.75%), Query Frame = 1 
Query:    1 FTEFGKWMDGWESRRKRVAGHDWCIIKLGLPGHIGGVMVDTAFFTGNQAPRFSLQGAWI 177
            FTE GKWMDGWESRRKR AGHDW II+LG PG I GV +DT FFTGNQAPRFSLQ A++
Sbjct:   32 FTEQGKWMDGWESRRKRTAGHDWSIIELGHPGSIRGVKIDTRFFTGNQAPRFSLQAAYL 90
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13289.5904.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJU1_ECTSI4.850e-3393.22Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A068TKN5_BLAGE1.430e-2876.27Allantoate amidinohydrolase (Fragment) n=1 Tax=Bla... [more]
A0A7S2TIL5_9EUKA1.900e-2676.27Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
A0A1Y1KHW0_PHOPY2.290e-2681.82Allantoate amidinohydrolase n=1 Tax=Photinus pyral... [more]
A0A836C8W1_9STRA2.880e-2676.27Galactose-binding domain-like protein n=1 Tax=Trib... [more]
A0A7J7BPR4_9COLE5.450e-2677.97Allantoate amidinohydrolase n=1 Tax=Abscondita ter... [more]
A0A8J5EBZ4_9DIPT1.090e-2572.88Allantoate amidinohydrolase n=2 Tax=Bradysia TaxID... [more]
A0A485KSZ2_9STRA2.070e-2578.95Aste57867_10812 protein n=1 Tax=Aphanomyces stella... [more]
UPI001CF5012F4.960e-2572.88LOW QUALITY PROTEIN: allantoicase-like n=2 Tax=Acr... [more]
A0A7S4DWW2_9EUKA5.750e-2577.97Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13289contigM-pyrifera_M_contig13289:4780..5827 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.2
Seed ortholog evalue3e-22
Seed eggNOG ortholog2880.D7FJU1
Preferred nameALLC
KEGG rclassRC00379,RC00712
KEGG koko:K01477
KEGG ReactionR02422
KEGG Pathwayko00230,ko01100,ko01120,map00230,map01100,map01120
KEGG ModuleM00546
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000255,GO:0003674,GO:0003824,GO:0004037,GO:0006807,GO:0006950,GO:0007154,GO:0008150,GO:0008152,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0010467,GO:0016787,GO:0016810,GO:0016813,GO:0017144,GO:0019954,GO:0030587,GO:0031152,GO:0031667,GO:0031668,GO:0031669,GO:0032502,GO:0033554,GO:0034641,GO:0042594,GO:0043170,GO:0043603,GO:0044237,GO:0044764,GO:0046483,GO:0048856,GO:0050896,GO:0051703,GO:0051704,GO:0051716,GO:0071496,GO:0071704,GO:0090702,GO:0098630,GO:0098743,GO:0099120,GO:1901360,GO:1901564
EggNOG free text desc.allantoicase activity
EggNOG OGsCOG4266@1,KOG4145@2759
EC3.5.3.4
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons2
Model size177
Cds size156
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13289.5904.1prot_M-pyrifera_M_contig13289.5904.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13289 4801..5827 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815812.8853376-UTR-M-pyrifera_M_contig13289:4779..48001622815812.8853376-UTR-M-pyrifera_M_contig13289:4779..4800Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13289 4780..4800 +
1692277582.9744222-UTR-M-pyrifera_M_contig13289:4779..48001692277582.9744222-UTR-M-pyrifera_M_contig13289:4779..4800Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13289 4780..4800 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815812.8955252-CDS-M-pyrifera_M_contig13289:4800..48591622815812.8955252-CDS-M-pyrifera_M_contig13289:4800..4859Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13289 4801..4859 +
1692277582.9884818-CDS-M-pyrifera_M_contig13289:4800..48591692277582.9884818-CDS-M-pyrifera_M_contig13289:4800..4859Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13289 4801..4859 +
1622815812.9050112-CDS-M-pyrifera_M_contig13289:5730..58271622815812.9050112-CDS-M-pyrifera_M_contig13289:5730..5827Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13289 5731..5827 +
1692277582.9980805-CDS-M-pyrifera_M_contig13289:5730..58271692277582.9980805-CDS-M-pyrifera_M_contig13289:5730..5827Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13289 5731..5827 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13289.5904.1

>prot_M-pyrifera_M_contig13289.5904.1 ID=prot_M-pyrifera_M_contig13289.5904.1|Name=mRNA_M-pyrifera_M_contig13289.5904.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=52bp
MDGWESRRKRVAGHDWCIIKLGLPGHIGGVMVDTAFFTGNQAPRFSLQGA
WI
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mRNA from alignment at M-pyrifera_M_contig13289:4780..5827+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13289.5904.1 ID=mRNA_M-pyrifera_M_contig13289.5904.1|Name=mRNA_M-pyrifera_M_contig13289.5904.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1048bp|location=Sequence derived from alignment at M-pyrifera_M_contig13289:4780..5827+ (Macrocystis pyrifera P11B4 male)
TTCACCGAGTTCGGGAAATGGATGGATGGCTGGGAGAGCCGCCGGAAGCG
GGTGGCGGGACATGATTGGTGCATAATCAAGTGAGCCCGAAAGCTACATT
ATTTATAGTAGCCGCGGAAACACATTCGCAAGCGATTGTTTTTCCTACCA
TCTTTCTACGTTGTCGTGCTGTTGTTGTAGTCTAGAGTTAGACTTGCGCT
GTCGCCTGAGGAGTGTGTATCTCCCTTGCTCTCTCTACAGGTACAACAAA
AGGCTTTCCCGACAAGAGGTTGCTCTGCTAGCGTTCCGTCTTTTCTGCAT
GCAAACTACCCGCGTTACAACCGGCCCGACTCCATAGGTCGGCGATCGGG
CTCACCTGTACCGTCTCTGATTCCAAATTCGCGACAACCCGGAAAATGCA
ATTTACACTATTTCAGACCTTAGCGGTAGGGTTAGGGTTAGGGTCAAGGT
TGGGGGTAGGCTTCAAAAACGGGATTTTCGAAACCCCGGGGACAGTCTTT
ATGATGTATACCAAGTATATACGTAAGTCGAGAGTTTGTTCGTCCCCCAC
GTGTAATTAGGACACGCAGGGGTCTGTATAGTTTTCATCCCTTATGCCAA
TGACAAGCCTTGCCTTTCCTGTTTCTGGACAGCTATCGGCGACCCGGCCT
GCCCAATTCCTCCCCGCAGGCGTCCCATCAATCTCAAATACAAAGCTGGA
AACCCGGGGACAATCTTTATAGATTTGCCGGTATACCAGGTAAACAGGTG
GAAAGTCTGTCCGTCCCCTACGTGCGACACAAATCACCCAGACGTCTGTG
TAGTGCCGCCCAATGCACGCACTGCCCAAAACAAAAACAAGTACTATGGA
AGCGTCCGGTACCAGTACTTGTCACTCTTTTTTGTATTGTATCGTTCACT
GATTGGCGCCATTTCTACTGCCGCTACTGCCGCTGCTGCTGCTGTCGCTA
GACTTGGCCTTCCGGGGCACATCGGAGGCGTTATGGTAGACACGGCATTT
TTCACCGGAAACCAGGCGCCTAGATTCTCACTGCAAGGAGCTTGGATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13289:4780..5827+

>mRNA_M-pyrifera_M_contig13289.5904.1 ID=mRNA_M-pyrifera_M_contig13289.5904.1|Name=mRNA_M-pyrifera_M_contig13289.5904.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig13289:4780..5827+ (Macrocystis pyrifera P11B4 male)
ATGGATGGCTGGGAGAGCCGCCGGAAGCGGGTGGCGGGACATGATTGGTG
CATAATCAAATGGATGGCTGGGAGAGCCGCCGGAAGCGGGTGGCGGGACA
TGATTGGTGCATAATCAAACTTGGCCTTCCGGGGCACATCGGAGGCGTTA
TGGTAGACACGGCATTTTTCACCGGAAACCAGGCGCCTAGATTCTCACTG
CAAGGAGCTTGGATCACTTGGCCTTCCGGGGCACATCGGAGGCGTTATGG
TAGACACGGCATTTTTCACCGGAAACCAGGCGCCTAGATTCTCACTGCAA
GGAGCTTGGATC
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