mRNA_M-pyrifera_M_contig13284.5903.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13284.5903.1
Unique NamemRNA_M-pyrifera_M_contig13284.5903.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig13284.5903.1 vs. uniprot
Match: A0A6H5L771_9PHAE (P4Hc domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L771_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 3.900e-47
Identity = 79/96 (82.29%), Postives = 85/96 (88.54%), Query Frame = 1 
Query:    1 DATVNAGAGKSTLSQARRAKAGGVAADLDNPASITANLYRRGYAFANHVTGYDLSLPGQEGFSVIKYGPDDEYRPHCDGDCTGAEFRPGGRIATMV 288
            DATVN GAGK+TLS ARRAKAGGV ADL+N  S+TA LYRRGY FANHVTGY+L + GQEGFSVIKYG DDEYRPHCDGDCTG EFRPGGR+ATMV
Sbjct:  284 DATVNGGAGKTTLSNARRAKAGGVGADLNNKNSVTAPLYRRGYGFANHVTGYNLDMDGQEGFSVIKYGSDDEYRPHCDGDCTGTEFRPGGRVATMV 379
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BLAST of mRNA_M-pyrifera_M_contig13284.5903.1 vs. uniprot
Match: A0A835YYR1_9STRA (Fe2OG dioxygenase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYR1_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.400e-25
Identity = 62/98 (63.27%), Postives = 70/98 (71.43%), Query Frame = 1 
Query:    4 ATVNAGAGKSTLSQARRAKAGGVAADL---DNPASITANLYRRGYAFANHVTGYDLSLPGQEGFSVIKYGPDDEYRPHCDGDCTGAEFRPGGRIATMV 288
            ATVN GA  + LS +RRAKAG  +  L   +    IT +LYRRGY FAN  TGYD+ L GQE FSVIKY   DEY PHCDGDCTGA ++PGGRIATMV
Sbjct:  311 ATVN-GATGADLSISRRAKAGVASPKLSLAEGEDPIT-DLYRRGYRFANDQTGYDMPLDGQEKFSVIKYDATDEYIPHCDGDCTGAPYKPGGRIATMV 406
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BLAST of mRNA_M-pyrifera_M_contig13284.5903.1 vs. uniprot
Match: A0A7S2UY63_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UY63_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 2.240e-18
Identity = 41/80 (51.25%), Postives = 52/80 (65.00%), Query Frame = 1 
Query:   49 RRAKAGGVAADLDNPASITANLYRRGYAFANHVTGYDLSLPGQEGFSVIKYGPDDEYRPHCDGDCTGAEFRPGGRIATMV 288
            RRA   G+  D D+P +    +  R +AFA+   G +  L  QE F+VI+YG DDEYRPHCD  CTG E+ PGGR+ATMV
Sbjct:  308 RRAMQAGILYDWDDPENPATRVANRTFAFASDALGIEFPLRYQEQFTVIQYGVDDEYRPHCDAGCTGEEYLPGGRVATMV 387
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BLAST of mRNA_M-pyrifera_M_contig13284.5903.1 vs. uniprot
Match: A0A7S0FTS6_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FTS6_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 9.200e-13
Identity = 43/104 (41.35%), Postives = 53/104 (50.96%), Query Frame = 1 
Query:    4 ATVNAGAGKSTLSQARRAKAGGVAA--DLDNPASITANLYRRGYAFANHVTGYDLSLPGQEGFSVIKYG-------PDDEYRPHCDGDCTGAEFRPGGRIATMV 288
            ATV  G G S  S++R+A   G+    D +      A L RR Y + NHV   D+   GQE    I+Y          D Y PHCDGDCTG  F+ G R+ATMV
Sbjct:   71 ATVADGKGGSEFSESRKAMQAGIKVPWDKEKEGHPIATLSRRVYDYVNHVLDLDIQHNGQEDLMSIQYEGRGENDTEPDRYMPHCDGDCTGLNFKSGTRMATMV 174
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BLAST of mRNA_M-pyrifera_M_contig13284.5903.1 vs. uniprot
Match: A0A7S1GMS7_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GMS7_CYCTE)

HSP 1 Score: 69.3 bits (168), Expect = 1.010e-11
Identity = 41/104 (39.42%), Postives = 58/104 (55.77%), Query Frame = 1 
Query:    4 ATVNAGAGKSTLSQARRAKAGGVAA--DLDNPASITANLYRRGYAFANHVTGYDLSLPGQEGFSVIKY---GPDD----EYRPHCDGDCTGAEFRPGGRIATMV 288
            A V  G+G   LS  RRA   G+    + +N     A + R+ Y + NHVTG+++   GQE    I+Y   G DD    +Y+PHCDG+CTG   + G R+AT+V
Sbjct:  198 AVVADGSGGHDLSDHRRALQAGIRVKWEKENEGDPIATISRKVYDYVNHVTGFNIDEKGQEDLMSIQYFGRGLDDTEPDQYKPHCDGECTGDPHKNGTRVATIV 301
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BLAST of mRNA_M-pyrifera_M_contig13284.5903.1 vs. uniprot
Match: A0A6U6CDA3_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6CDA3_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.030e-11
Identity = 45/104 (43.27%), Postives = 56/104 (53.85%), Query Frame = 1 
Query:    4 ATVNAGAGKSTLSQARRAKAGGVAAD--LDNPASITANLYRRGYAFANHVTGYDLSLPGQEGFSVIKY---GPD----DEYRPHCDGDCTGAEFRPGGRIATMV 288
            ATV  G G S LS+ R+A   GV     L+   +  A + RR Y + N V    +   GQE    I+Y   G D    D Y PHCDGDCTG EF+PG R+AT+V
Sbjct:  128 ATVADGKGGSKLSENRKAMQAGVRVPWKLEKSGNGIATVSRRVYDYVNKVLSLRIDEFGQEDLMSIQYEGRGIDEKEPDRYTPHCDGDCTGLEFKPGNRMATVV 231
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BLAST of mRNA_M-pyrifera_M_contig13284.5903.1 vs. uniprot
Match: A0A7S1MHQ6_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1MHQ6_ALECA)

HSP 1 Score: 62.4 bits (150), Expect = 1.850e-9
Identity = 32/81 (39.51%), Postives = 46/81 (56.79%), Query Frame = 1 
Query:   49 RRAKAGGVAADLDNPASITANLYRRGYAFANHVTGYDLSLPGQEGFSVIKYGP-DDEYRPHCDGDCTGAEFRPGGRIATMV 288
            RR+ +  +   L +P S    L  R ++   ++TGY +  PGQE  + + Y    DEYRPHCDG CTG+  + G RIAT +
Sbjct:  108 RRSYSKNINPPLKDPESELTRLVGRMFSVTRNLTGYSVYPPGQEPVNAVLYREIGDEYRPHCDGTCTGSMHQAGERIATSI 188
[Close]
BLAST of mRNA_M-pyrifera_M_contig13284.5903.1 vs. uniprot
Match: A0A7S0Q7L7_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q7L7_9EUKA)

HSP 1 Score: 62.8 bits (151), Expect = 1.990e-9
Identity = 31/73 (42.47%), Postives = 41/73 (56.16%), Query Frame = 1 
Query:   79 DLDNPASITANLYRRGYAFANHVTGYD--LSLPGQEGFSVIKYGP-DDEYRPHCDGDCTGAEFRPGGRIATMV 288
            D D+  +    L RR +AFA  V  Y   +   GQE  + + Y   DD+YRPHCDG+C G  + PG RIAT +
Sbjct:  232 DFDDEGAPVTKLARRKFAFAREVAEYSELVEGDGQEPINAVYYKDWDDQYRPHCDGECNGGRYSPGRRIATSL 304
[Close]
BLAST of mRNA_M-pyrifera_M_contig13284.5903.1 vs. uniprot
Match: A0A7S2GPT0_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2GPT0_9EUKA)

HSP 1 Score: 62.4 bits (150), Expect = 2.790e-9
Identity = 29/73 (39.73%), Postives = 44/73 (60.27%), Query Frame = 1 
Query:   79 DLDNPASITANLYRRGYAFANHVTGYD--LSLPGQEGFSVIKYGP-DDEYRPHCDGDCTGAEFRPGGRIATMV 288
            D ++ +++   + RR +AFA  V  Y+  +   GQE  + + Y   DD+YRPHCDG+C G  +R G RIAT +
Sbjct:  257 DYEDESNVVTRVVRRKFAFAREVAEYEDLIEGEGQEPLNSVYYKDYDDQYRPHCDGECNGGPYRRGSRIATSL 329
[Close]
BLAST of mRNA_M-pyrifera_M_contig13284.5903.1 vs. uniprot
Match: A0A812L3L0_9DINO (Dpy-18 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812L3L0_9DINO)

HSP 1 Score: 58.2 bits (139), Expect = 7.390e-8
Identity = 25/52 (48.08%), Postives = 32/52 (61.54%), Query Frame = 1 
Query:  136 ANHVTGYDLSLPGQEGFSVIKY-GPDDEYRPHCDGDCTGAEFRPGGRIATMV 288
            A  +TGY L+    E  ++  Y  P DEYRPHCDG C+G   RPG R+AT +
Sbjct:  182 AKQLTGYSLNSTSPEPLNIAAYRNPGDEYRPHCDGRCSGDRHRPGERVATSI 233
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13284.5903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5L771_9PHAE3.900e-4782.29P4Hc domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A835YYR1_9STRA1.400e-2563.27Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A7S2UY63_9STRA2.240e-1851.25Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S0FTS6_9STRA9.200e-1341.35Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S1GMS7_CYCTE1.010e-1139.42Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A6U6CDA3_9STRA1.030e-1143.27Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S1MHQ6_ALECA1.850e-939.51Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
A0A7S0Q7L7_9EUKA1.990e-942.47Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S2GPT0_9EUKA2.790e-939.73Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A812L3L0_9DINO7.390e-848.08Dpy-18 protein n=1 Tax=Symbiodinium natans TaxID=8... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13284contigM-pyrifera_M_contig13284:264..3066 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score169.5
Seed ortholog evalue7.8e-40
Seed eggNOG ortholog2880.D8LFZ0
KEGG rclassRC00478
KEGG koko:K00472
KEGG ReactionR01252
KEGG Pathwayko00330,ko01100,map00330,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.procollagen-proline 4-dioxygenase activity
EggNOG OGsKOG1591@1,KOG1591@2759
EC1.14.11.2
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons2
Model size288
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815812.8371305-CDS-M-pyrifera_M_contig13284:263..4321622815812.8371305-CDS-M-pyrifera_M_contig13284:263..432Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13284 264..432 -
1692277582.9476204-CDS-M-pyrifera_M_contig13284:263..4321692277582.9476204-CDS-M-pyrifera_M_contig13284:263..432Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13284 264..432 -
1622815812.8508263-CDS-M-pyrifera_M_contig13284:2947..30661622815812.8508263-CDS-M-pyrifera_M_contig13284:2947..3066Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13284 2948..3066 -
1692277582.9632607-CDS-M-pyrifera_M_contig13284:2947..30661692277582.9632607-CDS-M-pyrifera_M_contig13284:2947..3066Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13284 2948..3066 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13284.5903.1prot_M-pyrifera_M_contig13284.5903.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13284 264..3066 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13284.5903.1

>prot_M-pyrifera_M_contig13284.5903.1 ID=prot_M-pyrifera_M_contig13284.5903.1|Name=mRNA_M-pyrifera_M_contig13284.5903.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=96bp
DATVNAGAGKSTLSQARRAKAGGVAADLDNPASITANLYRRGYAFANHVT
GYDLSLPGQEGFSVIKYGPDDEYRPHCDGDCTGAEFRPGGRIATMV
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mRNA from alignment at M-pyrifera_M_contig13284:264..3066-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13284.5903.1 ID=mRNA_M-pyrifera_M_contig13284.5903.1|Name=mRNA_M-pyrifera_M_contig13284.5903.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2803bp|location=Sequence derived from alignment at M-pyrifera_M_contig13284:264..3066- (Macrocystis pyrifera P11B4 male)
GACGCGACCGTCAACGCAGGTGCGGGCAAGTCGACACTGTCCCAAGCACG
CAGGGCCAAGGCTGGCGGCGTTGCGGCCGACCTCGACAACCCCGCCTCTA
TCACCGCCAATCTATACAGGTAAAAAGGGGTACGTGGTGGTGCGGGTGGG
TGGGTGGGCGAGTCAGTAGATCTCACCACTTCTTTCGATGATAAAATGGT
CAACACACTTTATTTGTGCACGAGACAAAGCACTCGCCCTATGTGCAGGG
ATGCCGGTATTATTAATCGCGACTGGCCCTTCGGCCGCCCGGATGTTTTC
TGCAAAAACGCCACCAAAACACGCGGCGAAAGCCGCGTGACTGCCCCTGC
CGACCTCGAGCCCCCCAAAGGGTTGGGGCTCGGGTTGGGGTTAGGGTTCG
GGTTCGGGTTAGTTAGGCCAGGGATCAGGGCTGGTCTGGGCCGACGTGCA
AGGTTGAAATTGACGACACACGCCCAGCGCAACGGTTCTGTGCCGACCCC
GTAGTCCTGCGCATAGCGGAAGTCGAGACGAAGGGACTAACGCAACGCTT
ACCGTACCATTGATTGATTCTTTCTGATCTGATCTGATCTGATGATCTGA
TTGGCTATTGGGTCGGGGTTCGCGTTGCGCTCATCTTGCGCACGGGGTGT
GTCAACCATTGTCTCGAGTGAGTGGTGAGCTGTGAGCTACCCTCGGATGG
GTGTGGGTGGGTAAGTGGGTGAGTGAGTGGGTGTTTGTGGTGGGTAGTGA
GTGGGATGGGTGGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGTTGGGGG
GGTAAGGGTGGTTGGTGAGGGTGGTCGGGGGTGGTGGGAGTGATGGGTTA
GGGTTGGTGACTAGGGGTAGATGGCGGTGTTCGGTGGGAGGTATGCATAG
GTGGGTGGGTGGGTGGGTGGGTCGGGGGTGCGGTGTAAAAACGTTGGAAC
GCTTTCGGTGCTTGGACGAGGGAGGGTCTGCTCTCGTTTTTGTTTGTTTG
TTTTTTTTGTTTTTACTTCCGGGCTGCTGTATACCAGGTGCGCATTTGTA
TAACCTTCTGGACGGAATTTTAACCTCTGGTTCAAGTCTGAAGTCGACAC
CTAGCGGATACTATCCTTGCGACCAGAGTGGGTTTACTATACGCCTCCTT
CCCTTTACCCCCTTCCCCCCCTGTACAGCTGAGTACGCACGAACATGTAT
ATAATACCAGGCACCTGGCATATATAAGTATGTACGAGTATAGATATATA
TACGATATATATGAAATCTTTCGGACGAGTGAGAGCGAAGCATTCGCTTC
CGATTCCGAACGTTTCGTGTTGAACTTCGGCTGGATTCCAGACGCCTTCG
CTTCACTGGCTTCGCGCTTGGTTTTTCGACCGCTTTCCTCGAGGGTCGCG
CTCGCCGGGCTCCGACGGGTGTTCCCCCGTGCGCTGCGCGCATCTCGGGA
GTTTCGCGCCACCGACGAGTGCAGCGACCCCGAACTCGAAGGATATTTTC
TGGGGCGAGGAGACACGGAGGTTCTGTTTTCTTCGGTCCTGGAGATTTGT
TTCGCTTTTGTTGCTCCGCGAAGAGCTTTTTATTGTGACAGACTCGATCT
TTTTCTCGCCGAGTTTTGATCTCTCGGCCTAGAGTCCGTTTGTTCGGAAG
AATTTATTGGCACGCGTGGACAGTCGTGTATTCAGGATCTGAACGATTCA
AGGTTTGTTCGCAGGATCTTTTAGATCTCGACCCTTGGGTCTTTTAGATC
TCGAATACGAACACGAGACTGTCAACGCGCACCAATATAAAAGCATCCGA
ACAATTTATGACCCCTTCAATCGCTCAGATCCTGAATACACGACTGCTGT
CCACGCGTGCCACCCTTGGATCTTTTAGATCTGGACCCTTGGATCTTTTG
GATCTCGAATACGAATACGGGACTGTCAACTCGTACCAGTAAAAAATCAT
CCGAACAATTTGTGAACCCTTCAATCGTTCAGACCCTGAATACACGACAG
CAGTCTACCCGTGCCACCCTTGGATCTTTTAGATCTCGACCCTTGGATCT
TTTGGATCTCGAATACGAGTACGGGACTGTCAACTCGTACCAACAAAAAA
AATCTGGCGTCCCGCAAAGCAAGGAGCGGTAGCATCAGCACACGGCCGAG
AGATCGAACCTCGGCGGGAAAAAAGCTAAGATCGAGTCTGTCACGATAAT
AAGCTCTTCGCGGAGCAACAACAACGAAACAAATCTCCAGGACCGAAGAA
AATAGAAAATCCGTGTCTCCTCGCCCCAGCAAAGGTCCTTCGAGTTCGGG
GTCGCTGCGCTGCGGTCGACGTTGTTGGCGCGAGCCTGCGAGATGCACGC
AAGGGAGAACACCCGTCGGAGCCCGGCGAGCGCGACCCTCGAAAAAATGC
GGTCGAAAAAGCAAAAGCGCGAAGCCAGGAAAGCGAAGGCGTTCTGGAAT
CCAGCCTATTAAATTCAACACGAAACTTTTCGGAATCGGAAGCGAATGTT
TCGCTCTCAGCCGTCGCGAAGGAGTGTATATATATCTATATATCTATATA
ATGTAGATACATATTATATTATTTCGAACTTAATCCAAATGAAGAACCCG
ACATTACCCCAACGTTGTGTTCCCCGGGCACCAGGCGCGGGTACGCCTTC
GCAAACCACGTTACCGGATACGACCTCTCTCTGCCGGGACAGGAGGGGTT
CAGCGTGATCAAGTACGGCCCCGACGACGAGTACCGGCCCCACTGCGACG
GCGACTGCACGGGGGCAGAATTCCGTCCAGGCGGACGCATTGCCACCATG
GTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13284:264..3066-

>mRNA_M-pyrifera_M_contig13284.5903.1 ID=mRNA_M-pyrifera_M_contig13284.5903.1|Name=mRNA_M-pyrifera_M_contig13284.5903.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=576bp|location=Sequence derived from alignment at M-pyrifera_M_contig13284:264..3066- (Macrocystis pyrifera P11B4 male)
GACGCGACCGTCAACGCAGGTGCGGGCAAGTCGACACTGTCCCAAGCACG
CAGGGCCAAGGCTGGCGGCGTTGCGGCCGACCTCGACAACCCCGCCTCTA
TCACCGCCAATCTATACAGGACGCGACCGTCAACGCAGGTGCGGGCAAGT
CGACACTGTCCCAAGCACGCAGGGCCAAGGCTGGCGGCGTTGCGGCCGAC
CTCGACAACCCCGCCTCTATCACCGCCAATCTATACAGGCGCGGGTACGC
CTTCGCAAACCACGTTACCGGATACGACCTCTCTCTGCCGGGACAGGAGG
GGTTCAGCGTGATCAAGTACGGCCCCGACGACGAGTACCGGCCCCACTGC
GACGGCGACTGCACGGGGGCAGAATTCCGTCCAGGCGGACGCATTGCCAC
CATGGTGGCGCGGGTACGCCTTCGCAAACCACGTTACCGGATACGACCTC
TCTCTGCCGGGACAGGAGGGGTTCAGCGTGATCAAGTACGGCCCCGACGA
CGAGTACCGGCCCCACTGCGACGGCGACTGCACGGGGGCAGAATTCCGTC
CAGGCGGACGCATTGCCACCATGGTG
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