mRNA_M-pyrifera_M_contig13248.5891.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13248.5891.1
Unique NamemRNA_M-pyrifera_M_contig13248.5891.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig13248.5891.1 vs. uniprot
Match: A0A6H5L3Q5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Q5_9PHAE)

HSP 1 Score: 377 bits (969), Expect = 1.170e-119
Identity = 287/379 (75.73%), Postives = 302/379 (79.68%), Query Frame = 1 
Query:    1 ATTTPIKMVRAASSTADTLHTPQRQQGMAMVRTPPSGNPQLSANNSTSTSTVQTPSRQGPPQQTLASPATFQQAAG--QSPHPSNHQQAXLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGLPFSLTAQQLXXXXXXXXXXXXXXXXXXXXXXXXXXQRAGQAGLKGDGGAAFD-PASAANADREDDASGVPMGLALGQHHSALGTARQSAESGGRTALEQSMMFKPQPRDSERAKPYTPRNPYRTPVAFPSQPAAAFEKPHMFDKLNTDTLFLIFYYQQGTYQQYLAARELKKQSWRYHKKYMTWFQRHEEPKITTDEYEQGTYVYFDYETGWCQRIKSDFRFDYSFLEDEAL 1128
            ATTTPIKM R  S+  D +HTPQRQQG+ + RTPPS +  L  N  T+   V TPSRQGPPQ   ASPA FQ AAG  QSP+P+NHQ  X XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                 PFS      XXXXXXXXXXXXXXXXXXXXX   XXQRAGQ GLKGD G   D P   A    +DD SGV MGL LGQHH+ALGTARQSAESGGR ALEQSMMFKPQ RDSERAKPY PRNPYRT  AFPSQPA AFEKPHMF+KLNTDTLFLIFYYQQG+YQQYLAARELK+QSWRYHKKYMTWFQRHEEPK+TTD+YEQGTYVYFDYETGWCQRIKSDFRFDYSFLEDEAL
Sbjct:  406 ATTTPIKMGRMTSA-GDAMHTPQRQQGVPVARTPPSASAALDNNAGTN---VHTPSRQGPPQPQHASPAAFQGAAGAGQSPYPNNHQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------PFSFPXXXXXXXXXXXXXXXXXXXXXXXXXAQAXXQRAGQPGLKGDPGLPLDSPQMGAAIPADDDPSGVSMGLGLGQHHTALGTARQSAESGGRVALEQSMMFKPQSRDSERAKPYVPRNPYRTSTAFPSQPAEAFEKPHMFEKLNTDTLFLIFYYQQGSYQQYLAARELKRQSWRYHKKYMTWFQRHEEPKVTTDDYEQGTYVYFDYETGWCQRIKSDFRFDYSFLEDEAL 763
[Close]
BLAST of mRNA_M-pyrifera_M_contig13248.5891.1 vs. uniprot
Match: A0A7S1ZND7_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZND7_TRICV)

HSP 1 Score: 217 bits (552), Expect = 8.070e-65
Identity = 103/134 (76.87%), Postives = 114/134 (85.07%), Query Frame = 1 
Query:  718 ALEQSMMFKPQPRDSERAKPYTPRNPYRTPVAFPSQPAAAFEKPHMFDKLNTDTLFLIFYYQQGTYQQYLAARELKKQSWRYHKKYMTWFQRHEEPKITTDEYEQGTYVYFDYETGWCQRIKSDFRFDYSFLED 1119
            AL +S +  P   DSER + YTPRNPY TP ++PS P+  F+ P +F+KL TD LF IFYY QGTYQQYLAARELKKQSWRYHKKYMTWFQRHEEPK+TTDEYEQGTYVYFDYETGWCQRIKSDFRF+YSFLED
Sbjct:   48 ALNESFLHCPSNADSERQRTYTPRNPYPTPSSYPSVPSPIFDNPAVFEKLGTDCLFFIFYYAQGTYQQYLAARELKKQSWRYHKKYMTWFQRHEEPKVTTDEYEQGTYVYFDYETGWCQRIKSDFRFEYSFLED 181
[Close]
BLAST of mRNA_M-pyrifera_M_contig13248.5891.1 vs. uniprot
Match: A0A7R9WE12_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WE12_9STRA)

HSP 1 Score: 214 bits (544), Expect = 2.490e-64
Identity = 101/130 (77.69%), Postives = 111/130 (85.38%), Query Frame = 1 
Query:  730 SMMFKPQPRDSERAKPYTPRNPYRTPVAFPSQPAAAFEKPHMFDKLNTDTLFLIFYYQQGTYQQYLAARELKKQSWRYHKKYMTWFQRHEEPKITTDEYEQGTYVYFDYETGWCQRIKSDFRFDYSFLED 1119
            S +  P   DSER + YTPRNPY TP ++PS P+  F+ P +F+KL TD LF IFYY QGTYQQYLAARELKKQSWRYHKKYMTWFQRHEEPK+TTDEYEQGTYVYFDYETGWCQRIKSDFRF+YSFLED
Sbjct:    3 SFLHCPSNADSERQRTYTPRNPYPTPSSYPSTPSQIFDNPAVFEKLGTDCLFFIFYYAQGTYQQYLAARELKKQSWRYHKKYMTWFQRHEEPKVTTDEYEQGTYVYFDYETGWCQRIKSDFRFEYSFLED 132
[Close]
BLAST of mRNA_M-pyrifera_M_contig13248.5891.1 vs. uniprot
Match: A0A6S8TWH2_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8TWH2_9STRA)

HSP 1 Score: 221 bits (562), Expect = 3.180e-64
Identity = 105/135 (77.78%), Postives = 116/135 (85.93%), Query Frame = 1 
Query:  715 TALEQSMMFKPQPRDSERAKPYTPRNPYRTPVAFPSQPAAAFEKPHMFDKLNTDTLFLIFYYQQGTYQQYLAARELKKQSWRYHKKYMTWFQRHEEPKITTDEYEQGTYVYFDYETGWCQRIKSDFRFDYSFLED 1119
            +AL QS +  P   DSERA+ YTPRNPY TP ++P+ P+  FE P +F+KL TD LF IFYY QGTYQQYLAARELKKQSWRYHKKYMTWFQRHEEPK+TTDEYEQGTYVYFDYETGWCQRIKSDFRF+YSFLED
Sbjct:  200 SALNQSFLHCPSNADSERARVYTPRNPYPTPSSYPASPSPIFENPAIFEKLGTDCLFFIFYYAQGTYQQYLAARELKKQSWRYHKKYMTWFQRHEEPKVTTDEYEQGTYVYFDYETGWCQRIKSDFRFEYSFLED 334
[Close]
BLAST of mRNA_M-pyrifera_M_contig13248.5891.1 vs. uniprot
Match: B8CE67_THAPS (NOT2_3_5 domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CE67_THAPS)

HSP 1 Score: 211 bits (537), Expect = 3.240e-63
Identity = 101/134 (75.37%), Postives = 110/134 (82.09%), Query Frame = 1 
Query:  718 ALEQSMMFKPQPRDSERAKPYTPRNPYRTPVAFPSQPAAAFEKPHMFDKLNTDTLFLIFYYQQGTYQQYLAARELKKQSWRYHKKYMTWFQRHEEPKITTDEYEQGTYVYFDYETGWCQRIKSDFRFDYSFLED 1119
            AL  S M  P   DSER + YTPRNPY TP  +P  P+  FE P +F+KL TD LF IFYY QGTYQQYLAARELKKQSWRYHKKYMTWFQRHEEPK+TTDEYEQGTYVYFDYETGW QRIK+DFRF+YS+LED
Sbjct:    3 ALNDSFMQMPTGADSERQRSYTPRNPYPTPSCYPQNPSPIFENPAVFEKLGTDALFFIFYYAQGTYQQYLAARELKKQSWRYHKKYMTWFQRHEEPKVTTDEYEQGTYVYFDYETGWTQRIKTDFRFEYSYLED 136
[Close]
BLAST of mRNA_M-pyrifera_M_contig13248.5891.1 vs. uniprot
Match: A0A7S4BCF8_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BCF8_CHRCT)

HSP 1 Score: 215 bits (547), Expect = 1.080e-61
Identity = 100/134 (74.63%), Postives = 113/134 (84.33%), Query Frame = 1 
Query:  721 LEQSMMFKPQPRDSERAKPYTPRNPYRTPVAFPSQPAAAFEKPHMFDKLNTDTLFLIFYYQQGTYQQYLAARELKKQSWRYHKKYMTWFQRHEEPKITTDEYEQGTYVYFDYETGWCQRIKSDFRFDYSFLEDE 1122
            L  S++  P+P DSER K Y PRNPY TP +FP  PA+ F+ P +F+K + DTLF IFYYQQGTYQQYLAARELKKQSWRYHKKY+TWFQRHEEPK+T DEYEQGTYVYFDYETGWCQRIKS+F F+Y FLEDE
Sbjct:  228 LNLSLLNMPEPSDSERPKTYVPRNPYPTPSSFPQTPASVFDAPAVFEKFDVDTLFFIFYYQQGTYQQYLAARELKKQSWRYHKKYLTWFQRHEEPKVTADEYEQGTYVYFDYETGWCQRIKSEFTFEYGFLEDE 361
[Close]
BLAST of mRNA_M-pyrifera_M_contig13248.5891.1 vs. uniprot
Match: A0A7S1UQS1_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UQS1_9STRA)

HSP 1 Score: 221 bits (563), Expect = 3.680e-61
Identity = 112/169 (66.27%), Postives = 127/169 (75.15%), Query Frame = 1 
Query:  613 DREDDASGVPMGLALGQHHSALGTARQSAESGGRTALEQSMMFKPQPRDSERAKPYTPRNPYRTPVAFPSQPAAAFEKPHMFDKLNTDTLFLIFYYQQGTYQQYLAARELKKQSWRYHKKYMTWFQRHEEPKITTDEYEQGTYVYFDYETGWCQRIKSDFRFDYSFLED 1119
            DR  +AS  PMG A+ + HS  G+        G   L +S +  P   DSER + YTPRNPY TP ++P+ P+   E P +F+KL TD LF IFYY QGTYQQYLAARELKKQSWRYHKKYMTWFQRHEEPK+ TDEYEQGTYVYFDYETGWCQRIKSDFRF+YSFLED
Sbjct:  494 DRRQEAS--PMGGAVSRSHSTSGS--------GNLDLNESFLHMPTGADSERPRSYTPRNPYPTPASYPTTPSGVLENPAVFEKLGTDCLFFIFYYAQGTYQQYLAARELKKQSWRYHKKYMTWFQRHEEPKVKTDEYEQGTYVYFDYETGWCQRIKSDFRFEYSFLED 652
[Close]
BLAST of mRNA_M-pyrifera_M_contig13248.5891.1 vs. uniprot
Match: A0A6U3URG8_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3URG8_9STRA)

HSP 1 Score: 221 bits (562), Expect = 1.120e-60
Identity = 105/135 (77.78%), Postives = 116/135 (85.93%), Query Frame = 1 
Query:  715 TALEQSMMFKPQPRDSERAKPYTPRNPYRTPVAFPSQPAAAFEKPHMFDKLNTDTLFLIFYYQQGTYQQYLAARELKKQSWRYHKKYMTWFQRHEEPKITTDEYEQGTYVYFDYETGWCQRIKSDFRFDYSFLED 1119
            +AL QS +  P   DSERA+ YTPRNPY TP ++P+ P+  FE P +F+KL TD LF IFYY QGTYQQYLAARELKKQSWRYHKKYMTWFQRHEEPK+TTDEYEQGTYVYFDYETGWCQRIKSDFRF+YSFLED
Sbjct:  564 SALNQSFLHCPSNADSERARVYTPRNPYPTPSSYPASPSPIFENPAIFEKLGTDCLFFIFYYAQGTYQQYLAARELKKQSWRYHKKYMTWFQRHEEPKVTTDEYEQGTYVYFDYETGWCQRIKSDFRFEYSFLED 698
[Close]
BLAST of mRNA_M-pyrifera_M_contig13248.5891.1 vs. uniprot
Match: A0A7S2U5I8_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U5I8_9STRA)

HSP 1 Score: 220 bits (560), Expect = 1.510e-60
Identity = 105/134 (78.36%), Postives = 113/134 (84.33%), Query Frame = 1 
Query:  718 ALEQSMMFKPQPRDSERAKPYTPRNPYRTPVAFPSQPAAAFEKPHMFDKLNTDTLFLIFYYQQGTYQQYLAARELKKQSWRYHKKYMTWFQRHEEPKITTDEYEQGTYVYFDYETGWCQRIKSDFRFDYSFLED 1119
            AL  S M  P   DSER + YTPRNPY TP A+PS P+  F+ P +F+KL TD LF IFYY QGTYQQYLAARELKKQSWRYHKKYMTWFQRHEEPK+TTDEYEQGTYVYFDYETGWCQRIKSDFRF+YSFLED
Sbjct:  543 ALNDSFMHMPSNADSERQRTYTPRNPYPTPAAYPSTPSPLFDNPAIFEKLGTDGLFFIFYYAQGTYQQYLAARELKKQSWRYHKKYMTWFQRHEEPKVTTDEYEQGTYVYFDYETGWCQRIKSDFRFEYSFLED 676
[Close]
BLAST of mRNA_M-pyrifera_M_contig13248.5891.1 vs. uniprot
Match: F0YJK4_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJK4_AURAN)

HSP 1 Score: 218 bits (554), Expect = 2.530e-60
Identity = 104/137 (75.91%), Postives = 116/137 (84.67%), Query Frame = 1 
Query:  718 ALEQSMMFKPQPRDSERAKPYTPRNPYRTPVAFPSQPAAAFEKPHMFDKLNTDTLFLIFYYQQGTYQQYLAARELKKQSWRYHKKYMTWFQRHEEPKITTDEYEQGTYVYFDYETGWCQRIKSDFRFDYSFLEDEAL 1128
            AL  SM   P+  DSER + Y PRNPY TP AFPS PA+ F+   +F+KL TDTLF IFYYQQGTYQQYLAA+ELKKQSWRYHKKYMTWFQRHEEPK+TTDE+EQGTYVYFDYETGWCQRIKSDF F+Y+FLEDE +
Sbjct:  461 ALALSMRRAPRKADSERPRQYVPRNPYATPPAFPSTPASTFDDAKVFEKLGTDTLFFIFYYQQGTYQQYLAAKELKKQSWRYHKKYMTWFQRHEEPKVTTDEFEQGTYVYFDYETGWCQRIKSDFTFEYNFLEDELV 597
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13248.5891.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L3Q5_9PHAE1.170e-11975.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1ZND7_TRICV8.070e-6576.87Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7R9WE12_9STRA2.490e-6477.69Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A6S8TWH2_9STRA3.180e-6477.78Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
B8CE67_THAPS3.240e-6375.37NOT2_3_5 domain-containing protein (Fragment) n=1 ... [more]
A0A7S4BCF8_CHRCT1.080e-6174.63Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S1UQS1_9STRA3.680e-6166.27Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A6U3URG8_9STRA1.120e-6077.78Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S2U5I8_9STRA1.510e-6078.36Hypothetical protein n=1 Tax=Attheya septentrional... [more]
F0YJK4_AURAN2.530e-6075.91Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13248contigM-pyrifera_M_contig13248:760..5068 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score221.9
Seed ortholog evalue5.1e-55
Seed eggNOG ortholog44056.XP_009040583.1
Preferred nameCNOT3
KEGG koko:K12580
KEGG Pathwayko03018,map03018
Hectar predicted targeting categoryother localisation
GOsGO:0000075,GO:0000077,GO:0000175,GO:0000278,GO:0000288,GO:0000289,GO:0000290,GO:0000932,GO:0000956,GO:0001701,GO:0001824,GO:0001825,GO:0001829,GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004535,GO:0004540,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006354,GO:0006355,GO:0006357,GO:0006366,GO:0006368,GO:0006401,GO:0006402,GO:0006417,GO:0006464,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006977,GO:0007049,GO:0007093,GO:0007154,GO:0007165,GO:0007275,GO:0007346,GO:0008150,GO:0008152,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009653,GO:0009790,GO:0009792,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009968,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010646,GO:0010648,GO:0010810,GO:0010811,GO:0010948,GO:0016070,GO:0016071,GO:0016567,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0017148,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0019538,GO:0022402,GO:0023051,GO:0023052,GO:0023057,GO:0030014,GO:0030015,GO:0030154,GO:0030155,GO:0030330,GO:0030447,GO:0031086,GO:0031087,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031570,GO:0031571,GO:0032268,GO:0032269,GO:0032446,GO:0032501,GO:0032502,GO:0032774,GO:0032784,GO:0032786,GO:0032968,GO:0032991,GO:0033143,GO:0033144,GO:0033146,GO:0033147,GO:0033554,GO:0034243,GO:0034248,GO:0034249,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0035556,GO:0035770,GO:0036211,GO:0036464,GO:0040007,GO:0042710,GO:0042770,GO:0043009,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043412,GO:0043900,GO:0043902,GO:0044010,GO:0044011,GO:0044182,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044764,GO:0044773,GO:0044774,GO:0044783,GO:0044819,GO:0045785,GO:0045786,GO:0045787,GO:0045893,GO:0045930,GO:0045935,GO:0045944,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051239,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0051703,GO:0051704,GO:0051716,GO:0051726,GO:0060255,GO:0065007,GO:0070647,GO:0071156,GO:0071158,GO:0071704,GO:0072331,GO:0072395,GO:0072401,GO:0072413,GO:0072422,GO:0072431,GO:0080090,GO:0090068,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0090605,GO:0090609,GO:0097659,GO:0140098,GO:1900187,GO:1900189,GO:1900190,GO:1900192,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901575,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902400,GO:1902402,GO:1902403,GO:1902680,GO:1902806,GO:1902807,GO:1903047,GO:1903506,GO:1903508,GO:1990904,GO:2000036,GO:2000045,GO:2000112,GO:2000113,GO:2000134,GO:2001141
EggNOG free text desc.nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
EggNOG OGsCOG5665@1,KOG2150@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019
Exons6
Model size1491
Cds size1110
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13248.5891.1prot_M-pyrifera_M_contig13248.5891.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13248 781..4708 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815811.8757517-UTR-M-pyrifera_M_contig13248:759..7801622815811.8757517-UTR-M-pyrifera_M_contig13248:759..780Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13248 760..780 +
1692277582.3759496-UTR-M-pyrifera_M_contig13248:759..7801692277582.3759496-UTR-M-pyrifera_M_contig13248:759..780Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13248 760..780 +
1622815811.9705772-UTR-M-pyrifera_M_contig13248:4708..50681622815811.9705772-UTR-M-pyrifera_M_contig13248:4708..5068Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13248 4709..5068 +
1692277582.4497736-UTR-M-pyrifera_M_contig13248:4708..50681692277582.4497736-UTR-M-pyrifera_M_contig13248:4708..5068Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13248 4709..5068 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815811.8883922-CDS-M-pyrifera_M_contig13248:780..8371622815811.8883922-CDS-M-pyrifera_M_contig13248:780..837Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13248 781..837 +
1692277582.3872175-CDS-M-pyrifera_M_contig13248:780..8371692277582.3872175-CDS-M-pyrifera_M_contig13248:780..837Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13248 781..837 +
1622815811.9009104-CDS-M-pyrifera_M_contig13248:1588..19601622815811.9009104-CDS-M-pyrifera_M_contig13248:1588..1960Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13248 1589..1960 +
1692277582.3968315-CDS-M-pyrifera_M_contig13248:1588..19601692277582.3968315-CDS-M-pyrifera_M_contig13248:1588..1960Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13248 1589..1960 +
1622815811.916298-CDS-M-pyrifera_M_contig13248:2664..28481622815811.916298-CDS-M-pyrifera_M_contig13248:2664..2848Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13248 2665..2848 +
1692277582.4059863-CDS-M-pyrifera_M_contig13248:2664..28481692277582.4059863-CDS-M-pyrifera_M_contig13248:2664..2848Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13248 2665..2848 +
1622815811.9322128-CDS-M-pyrifera_M_contig13248:3312..34541622815811.9322128-CDS-M-pyrifera_M_contig13248:3312..3454Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13248 3313..3454 +
1692277582.4165087-CDS-M-pyrifera_M_contig13248:3312..34541692277582.4165087-CDS-M-pyrifera_M_contig13248:3312..3454Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13248 3313..3454 +
1622815811.9447832-CDS-M-pyrifera_M_contig13248:3901..41151622815811.9447832-CDS-M-pyrifera_M_contig13248:3901..4115Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13248 3902..4115 +
1692277582.426004-CDS-M-pyrifera_M_contig13248:3901..41151692277582.426004-CDS-M-pyrifera_M_contig13248:3901..4115Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13248 3902..4115 +
1622815811.9593287-CDS-M-pyrifera_M_contig13248:4567..47081622815811.9593287-CDS-M-pyrifera_M_contig13248:4567..4708Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13248 4568..4708 +
1692277582.435333-CDS-M-pyrifera_M_contig13248:4567..47081692277582.435333-CDS-M-pyrifera_M_contig13248:4567..4708Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13248 4568..4708 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13248.5891.1

>prot_M-pyrifera_M_contig13248.5891.1 ID=prot_M-pyrifera_M_contig13248.5891.1|Name=mRNA_M-pyrifera_M_contig13248.5891.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=370bp
MVRAASSTADTLHTPQRQQGMAMVRTPPSGNPQLSANNSTSTSTVQTPSR
QGPPQQTLASPATFQQAAGQSPHPSNHQQAALPQQQQQQQQQQQQQQQQQ
QAAQAGAQQKQQQQQQQQQQAQLQQQQQQQQQQQQGGLPFSLTAQQLQMQ
QQQQQLQAAAAVVAQQQQAQTQQQRAGQAGLKGDGGAAFDPASAANADRE
DDASGVPMGLALGQHHSALGTARQSAESGGRTALEQSMMFKPQPRDSERA
KPYTPRNPYRTPVAFPSQPAAAFEKPHMFDKLNTDTLFLIFYYQQGTYQQ
YLAARELKKQSWRYHKKYMTWFQRHEEPKITTDEYEQGTYVYFDYETGWC
QRIKSDFRFDYSFLEDEAL*
back to top

mRNA from alignment at M-pyrifera_M_contig13248:760..5068+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13248.5891.1 ID=mRNA_M-pyrifera_M_contig13248.5891.1|Name=mRNA_M-pyrifera_M_contig13248.5891.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=4309bp|location=Sequence derived from alignment at M-pyrifera_M_contig13248:760..5068+ (Macrocystis pyrifera P11B4 male)
GCCACAACCACCCCTATCAAAATGGTTCGCGCCGCCTCATCCACTGCAGA
TACCCTTCACACACCACAGCGGCAGCAGGTGGGTATTTTGCTGTGCACCA
CGGCATTGTTGTTGGTTGCTTTGCGACGCGATCGCGGTATCCTCCATCTT
TTCGATAGGATAGGTTTCTATGCAATGATGCATGATGCATGTTGGTCGCT
GGCGTTAGAAGGGAATTCCTTGTTGGGGGAGGCCTTCGCTATCATAGCTC
GTACGTGTTTTTGATTGCACGATAATAGCACGCTTTCTTGCTCTAGACCG
CGCGTTTTCCTCGGAGCATTCGGGATAGTTTACCTTACCGCGGTACCGAT
CACACGTTTTCCTCTGAAGTTACCAGGTATGTGTTGGAATGGTAACCGCG
TTATCGATCACGCGTTTTCTGGTGGAGTGTGTGCTGGGATCGTTTCACAC
CTCGAACAAATGGTATTCTACAGCAGTAGATCATCATCTAGATTATCTAC
TTACAAGTTTATCACCTGCCGTTTGGAGAGCTTGTGCAGGATCTGCTAAG
TACAGATCCAACTCAGATCCAACTCAGATGAGCAGAGCAGAGATGTTCTC
GGCCGTGCAGATTGTACAAGTCCCACCCGGCAGCATAATAAATGCAGTAG
ATCATGCAAGATCGAGAATATAGATGTATCCGCCTTGCACGATCTAAATC
GTGAAGTGGGAATCGATGATGTGGAAGGTGTGGATGGTTTACCGCGATAT
CAGCTCTGTGTTACATATAGCGACCCGTTATCTACAACACTCAGCCTTTT
ATGTGTACTGCGCGTGGTTGTCGTTGCAGGGGATGGCAATGGTGAGGACA
CCCCCATCAGGTAATCCGCAACTCAGCGCCAACAACAGCACGAGCACGAG
CACCGTTCAGACCCCATCGCGACAAGGGCCGCCTCAGCAGACGCTTGCCT
CCCCGGCGACCTTCCAGCAGGCAGCCGGCCAGTCGCCGCACCCGAGCAAT
CACCAGCAGGCCGCCCTACCGCAGCAGCAGCAGCAACAGCAGCAGCAGCA
GCAACAACAACAACAACAACAGCAGGCCGCTCAGGCCGGGGCGCAGCAGA
AGCAGCAGCAACAACAGCAGCAGCAACAGCAAGCACAACTTCAACAGCAG
CAGCAACAGCAACAGCAACAACAGCAGGGGGGGCTCCCGTTCTCGCTTAC
GGTGCGTTCGGTCAAAATTGTGGCATCATTACCTATCGTTTGCACTCTCA
TCGGCCACCAGCTTTTGCCGCGGGGTCCATTTACCCCACGATTATATGGT
ACGAGCATGATACCAGGGTACCTTGTTGTGGCAACCGGCGTACTGGGCCT
GGCAGGTACGACGTTATTACGGGCGGCCATACATGGTATCAATATATTGT
AATAGTAATAGTAATAGATGGCAATCAGAACTCACGATGTCCCCAAAAAC
CATGTATTCCCCTACCTCTATCTTCACACACATCTCTCTGTTTACCATGT
ATGACTACGTATGCCCCCCCCTAGTAGTCATAGTAGAGACATTAGAGTTT
CCTTACAAGGCTCCATCGCGGGCCGACCTCGCATGCTAACCTTGATGTTG
AAAAGTACCATTTGGGGTACATGGCTTGGTCGTCCCCAATTGGAGATTCT
TCATTTTCAGCCCTCGCCCATGCGCGGCAGAGACTGCCTAGAGAAAACAT
CGCGTGAGCGCTTCGGCACTTTCCGAGAACACCTCTGCGGTGCCGCCAAT
AGTATCAAAGACATGTCCACATTTTCATCTGGTGTAGTATGATTGTACGA
AGCATTGAATCAATGTCGTTGTTTGGAGCATTGGCAATACTTCAGGCGCC
CACGTGATGTCAACTATTTTACGGTACCCTTCGCACGATTTCTGGCGATT
CTAAGGCGCAGCAGCTTCAGATGCAACAGCAACAGCAGCAGCTTCAGGCA
GCGGCGGCGGTGGTGGCGCAGCAACAACAAGCCCAAACGCAGCAGCAGCG
GGCAGGGCAGGCAGGCTTGAAGGGGGATGGTGGTGCGGCTTTCGATCCCG
CCTCCGCGGCTAACGCTGATCGGGAGGACGATGCATCAGGTGCGGTACAA
TAGTGCGTCATGTCTCTAATATCCTCAGACTGGACGATCGGGTACGATGG
ATGCGTGGTGACGTTGGACAGCCGCTTGATATTTACCGACGCAAAGTTGT
TGCTGCAGTAGGCATGGGTTGGCTCGTGGGTCGACCTTGTGACGTACGTT
GCGGATGGAACAGCTGCGTGTCACCAACGCGAGTTTCCCTGTTGTTGCTT
GAAGAGTGTGGCGTACGTTGTGGCCCCGAGATTTGTACCTAACCCGAATG
CGGCCCTATCATCCCCTATCATGTACGCCTATATACAATAAAAACTACGG
GTCCGGGGTAAATACCTGATCTGCATGCTCGCTCTTTTGGGCTCCTACGG
CATACCTGATACCTTGTGCCTGGCATTAATATATGCTATTGATACTGCAG
TCACATGTGACATGTCGGATGTGTCTGACGTGTCCGTCCCTCGAACTCGA
TAGGTGTGCCGATGGGGCTAGCTCTCGGGCAGCACCACTCGGCTTTGGGA
ACGGCACGGCAAAGCGCCGAGTCTGGCGGCCGTACAGCTCTCGAGCAGAG
CATGATGTTCAAGCCACAACCGCGGGACTCCGAACGAGCCAAGCCGTGAG
TCTACCTGGTCCTTTCACCGCCGCAGCTATAAAACTTGTCATGTGTAGAG
GATGAAGTCTCAACTCGCAACCTGAGGGACCGAGTTCTACCACTCACATC
CAGCCGTAGAGTGGCTAGGAGTGCCCGCTTTGGACTCATGCACGGGTGGA
GAAAAATTACAGCACTTACCAGTTATTGCCCTGATAAGATCGCCTACGCC
ACACGGTTCTATGTCACGTGTATCGCGGTGTTACATGACACATTACCGCG
TACCAGGTACTTTACAATATGTCCGTTACGAGTAGACCACCGCCGCACCT
CGACACCGGAAACGCAACGCTACGTATGTGCATCCGATGTCGACGGTGGT
GTTCGCCAACACACGCTGTCGCTCCCAGGTTGCCACCGACCACCCCTCGG
CGTGCACCGACTCTTCCTCTGTACGGTATCCTTTTTTTTCAGGTATACTC
CGCGTAACCCCTACCGAACGCCAGTGGCGTTTCCGAGCCAACCCGCTGCT
GCATTCGAGAAGCCACACATGTTCGACAAGCTCAACACAGATACGCTGTT
CCTGATCTTCTACTACCAGCAAGGGACGTACCAGCAGTACCTCGCTGCAC
GAGAGTTGAAGAAGCAGTCTTGGCGGTACCACAAAAAGTATATGACGTGG
TTCCAGGTACGTGAGCATCGCTTACACTGCTGTTGTCACGGGTATAAGAT
CACGAGCTTGCATGCTCGCGCTCGTGGGTACTGCTGCGTTCACGCATCCG
GTTCGGCTCTTGGAGCGGTCCGCATGCGTACCTTCATGATTCTATTCACC
CTCATTAATTCGACACCGTTTTGTCCCACGACCTGAAAATTCTGCACGGT
TACTGCTTGGTCCACGACAGATTGCTTTGCGGCAATGGTGATGGTCATAA
TGACAAGCTTGGGCTTCTATTGCACGCAACCAGGCTAGGAATCAATCAAG
ATGTATCTACTTTAGCAAACAATTAGACAATAACGAGCACGGCGTCTTCG
CGAGGCCGCCATCACATGCTAGCGGCAACGCCACTAACTGGTCTCCCTGC
TGTGTCGCGTCTGCTTTCACTCGCACTATCCTTTGGCATTGCTGCATCGC
ACTGGCAGCGTCACGAGGAGCCCAAGATAACCACTGACGAGTACGAGCAG
GGCACGTACGTTTACTTCGATTACGAGACCGGGTGGTGCCAGCGCATCAA
GTCCGATTTCCGTTTCGACTACAGTTTCCTAGAGGACGAGGCGTTGTAGA
GGAAACGTACCACACCTTGGATAATACTACTGTACCCTGTGGTTGTTTCT
CTTTGCCATCAAGACTGATTGCTTCATGAGGTGCTCACTGATGGAGATAT
TGTAGGCCAAACACGCCTCGGCCGAGTAGGTACACCCGCAAGCGCGTACG
ATCAACGTGCCGCTGGAAAACGTGTACTGAGAAGCGATGGCCCGGCGTGA
ATGTCGATGTCGATAATTGATCGGTTTTATCGGTGATTTGTTATTGTGAT
TTTGTTCACGACTCACGTGGCCTTGGGGGGCCGCAGGAGCCCCCGAAAAA
TCCCACGATGCCATGACAGTGGTATTATAGAGGATGCCTACTGTATTAAA
GAGCACGGC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig13248:760..5068+

>mRNA_M-pyrifera_M_contig13248.5891.1 ID=mRNA_M-pyrifera_M_contig13248.5891.1|Name=mRNA_M-pyrifera_M_contig13248.5891.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2220bp|location=Sequence derived from alignment at M-pyrifera_M_contig13248:760..5068+ (Macrocystis pyrifera P11B4 male)
ATGGTTCGCGCCGCCTCATCCACTGCAGATACCCTTCACACACCACAGCG
GCAGCAGATGGTTCGCGCCGCCTCATCCACTGCAGATACCCTTCACACAC
CACAGCGGCAGCAGGGGATGGCAATGGTGAGGACACCCCCATCAGGTAAT
CCGCAACTCAGCGCCAACAACAGCACGAGCACGAGCACCGTTCAGACCCC
ATCGCGACAAGGGCCGCCTCAGCAGACGCTTGCCTCCCCGGCGACCTTCC
AGCAGGCAGCCGGCCAGTCGCCGCACCCGAGCAATCACCAGCAGGCCGCC
CTACCGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAACAACAACAACA
ACAACAGCAGGCCGCTCAGGCCGGGGCGCAGCAGAAGCAGCAGCAACAAC
AGCAGCAGCAACAGCAAGCACAACTTCAACAGCAGCAGCAACAGCAACAG
CAACAACAGCAGGGGGGGCTCCCGTTCTCGCTTACGGGGATGGCAATGGT
GAGGACACCCCCATCAGGTAATCCGCAACTCAGCGCCAACAACAGCACGA
GCACGAGCACCGTTCAGACCCCATCGCGACAAGGGCCGCCTCAGCAGACG
CTTGCCTCCCCGGCGACCTTCCAGCAGGCAGCCGGCCAGTCGCCGCACCC
GAGCAATCACCAGCAGGCCGCCCTACCGCAGCAGCAGCAGCAACAGCAGC
AGCAGCAGCAACAACAACAACAACAACAGCAGGCCGCTCAGGCCGGGGCG
CAGCAGAAGCAGCAGCAACAACAGCAGCAGCAACAGCAAGCACAACTTCA
ACAGCAGCAGCAACAGCAACAGCAACAACAGCAGGGGGGGCTCCCGTTCT
CGCTTACGGCGCAGCAGCTTCAGATGCAACAGCAACAGCAGCAGCTTCAG
GCAGCGGCGGCGGTGGTGGCGCAGCAACAACAAGCCCAAACGCAGCAGCA
GCGGGCAGGGCAGGCAGGCTTGAAGGGGGATGGTGGTGCGGCTTTCGATC
CCGCCTCCGCGGCTAACGCTGATCGGGAGGACGATGCATCAGGCGCAGCA
GCTTCAGATGCAACAGCAACAGCAGCAGCTTCAGGCAGCGGCGGCGGTGG
TGGCGCAGCAACAACAAGCCCAAACGCAGCAGCAGCGGGCAGGGCAGGCA
GGCTTGAAGGGGGATGGTGGTGCGGCTTTCGATCCCGCCTCCGCGGCTAA
CGCTGATCGGGAGGACGATGCATCAGGTGTGCCGATGGGGCTAGCTCTCG
GGCAGCACCACTCGGCTTTGGGAACGGCACGGCAAAGCGCCGAGTCTGGC
GGCCGTACAGCTCTCGAGCAGAGCATGATGTTCAAGCCACAACCGCGGGA
CTCCGAACGAGCCAAGCCGTGTGCCGATGGGGCTAGCTCTCGGGCAGCAC
CACTCGGCTTTGGGAACGGCACGGCAAAGCGCCGAGTCTGGCGGCCGTAC
AGCTCTCGAGCAGAGCATGATGTTCAAGCCACAACCGCGGGACTCCGAAC
GAGCCAAGCCGTATACTCCGCGTAACCCCTACCGAACGCCAGTGGCGTTT
CCGAGCCAACCCGCTGCTGCATTCGAGAAGCCACACATGTTCGACAAGCT
CAACACAGATACGCTGTTCCTGATCTTCTACTACCAGCAAGGGACGTACC
AGCAGTACCTCGCTGCACGAGAGTTGAAGAAGCAGTCTTGGCGGTACCAC
AAAAAGTATATGACGTGGTTCCAGGTATACTCCGCGTAACCCCTACCGAA
CGCCAGTGGCGTTTCCGAGCCAACCCGCTGCTGCATTCGAGAAGCCACAC
ATGTTCGACAAGCTCAACACAGATACGCTGTTCCTGATCTTCTACTACCA
GCAAGGGACGTACCAGCAGTACCTCGCTGCACGAGAGTTGAAGAAGCAGT
CTTGGCGGTACCACAAAAAGTATATGACGTGGTTCCAGCGTCACGAGGAG
CCCAAGATAACCACTGACGAGTACGAGCAGGGCACGTACGTTTACTTCGA
TTACGAGACCGGGTGGTGCCAGCGCATCAAGTCCGATTTCCGTTTCGACT
ACAGTTTCCTAGAGGACGAGGCGTTGTAGCGTCACGAGGAGCCCAAGATA
ACCACTGACGAGTACGAGCAGGGCACGTACGTTTACTTCGATTACGAGAC
CGGGTGGTGCCAGCGCATCAAGTCCGATTTCCGTTTCGACTACAGTTTCC
TAGAGGACGAGGCGTTGTAG
back to top