mRNA_M-pyrifera_M_contig13230.5886.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13230.5886.1
Unique NamemRNA_M-pyrifera_M_contig13230.5886.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13230.5886.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13230contigM-pyrifera_M_contig13230:856..1641 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size786
Cds size399
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815811.3420026-UTR-M-pyrifera_M_contig13230:855..12421622815811.3420026-UTR-M-pyrifera_M_contig13230:855..1242Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13230 856..1242 +
1692277582.1294682-UTR-M-pyrifera_M_contig13230:855..12421692277582.1294682-UTR-M-pyrifera_M_contig13230:855..1242Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13230 856..1242 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815811.3530302-CDS-M-pyrifera_M_contig13230:1242..16411622815811.3530302-CDS-M-pyrifera_M_contig13230:1242..1641Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13230 1243..1641 +
1692277582.13977-CDS-M-pyrifera_M_contig13230:1242..16411692277582.13977-CDS-M-pyrifera_M_contig13230:1242..1641Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13230 1243..1641 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13230.5886.1prot_M-pyrifera_M_contig13230.5886.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13230 1243..1641 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13230.5886.1

>prot_M-pyrifera_M_contig13230.5886.1 ID=prot_M-pyrifera_M_contig13230.5886.1|Name=mRNA_M-pyrifera_M_contig13230.5886.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=133bp
MRRVPLSVSTLRCTPKAPHCTVITVLYGKHRAVRHTVRESPHCTANTVLN
GRHRNTMLNGKHRTVRQTPYFTVNTVPCGKHQTVRLKLPCTANRVSYSLH
YCTAKTVQDHSRPGVVIPWDHNLFCDCLVNKQP
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mRNA from alignment at M-pyrifera_M_contig13230:856..1641+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13230.5886.1 ID=mRNA_M-pyrifera_M_contig13230.5886.1|Name=mRNA_M-pyrifera_M_contig13230.5886.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=786bp|location=Sequence derived from alignment at M-pyrifera_M_contig13230:856..1641+ (Macrocystis pyrifera P11B4 male)
CGGACTTCGACGAAAAAACAAACCAACTGCTCGTGCAGCGAGAATAGTTC
CGTGCGCAATTCGCAACCCAGGGTAAACCAGCAGCAAGAGCCCCCCCCAA
GAGGTGAACACCGCGGAGACAGGTGTGCGTACAAGAGACACGAACCAGAC
TATAACCAGGAAATCCCAGACGAGATGGTGCCTATACTTCAACCCTTACT
TTCCAAAAGGTCAGGTCAAGGTCAGACGCTGCCCCTTACGGAGAATGCGC
CGCCACCAGGTCTGCGCTGTTCTTGGTGCAACGGTTGGTGCGCGACGCAG
TAAGTATCACCGGTGTCCTGATCCCTGATCTAGCATCTTCTGTCTCAGGG
CTCTAATCATTTTTTGGTCAAGCTTGGCCAATCGTGTATGCGTCGTGTGC
CTCTCTCCGTGTCGACGCTGCGATGTACGCCAAAAGCACCTCACTGTACG
GTAATCACCGTATTATACGGCAAACATCGTGCTGTACGGCACACAGTACG
GGAATCACCGCATTGTACGGCCAACACCGTACTAAACGGCAGACACCGCA
ACACTATGCTGAACGGAAAACACCGTACCGTACGGCAGACACCCTACTTT
ACGGTCAACACTGTGCCGTGCGGCAAACACCAAACGGTACGGCTAAAGCT
TCCCTGTACCGCAAACAGAGTATCATACTCACTACACTACTGTACGGCAA
AGACCGTACAGGACCACTCACGGCCGGGAGTTGTCATTCCTTGGGACCAC
AACCTATTTTGCGATTGTCTGGTTAACAAACAGCCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13230:856..1641+

>mRNA_M-pyrifera_M_contig13230.5886.1 ID=mRNA_M-pyrifera_M_contig13230.5886.1|Name=mRNA_M-pyrifera_M_contig13230.5886.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=798bp|location=Sequence derived from alignment at M-pyrifera_M_contig13230:856..1641+ (Macrocystis pyrifera P11B4 male)
ATGCGTCGTGTGCCTCTCTCCGTGTCGACGCTGCGATGTACGCCAAAAGC
ACCTCACTGTACGGTAATCACCGTATTATACGGCAAACATCGTGCTGTAC
GGCACACAGTACGGGAATCACCGCATTGTACGGCCAACACCGTACTAAAC
GGCAGACACCGCAACACTATGCTGAACGGAAAACACCGTACCGTACGGCA
GACACCCTACTTTACGGTCAACACTGTGCCGTGCGGCAAACACCAAACGG
TACGGCTAAAGCTTCCCTGTACCGCAAACAGAGTATCATACTCACTACAC
TACTGTACGGCAAAGACCGTACAGGACCACTCACGGCCGGGAGTTGTCAT
TCCTTGGGACCACAACCTATTTTGCGATTGTCTGGTTAACAAACAGCCCA
TGCGTCGTGTGCCTCTCTCCGTGTCGACGCTGCGATGTACGCCAAAAGCA
CCTCACTGTACGGTAATCACCGTATTATACGGCAAACATCGTGCTGTACG
GCACACAGTACGGGAATCACCGCATTGTACGGCCAACACCGTACTAAACG
GCAGACACCGCAACACTATGCTGAACGGAAAACACCGTACCGTACGGCAG
ACACCCTACTTTACGGTCAACACTGTGCCGTGCGGCAAACACCAAACGGT
ACGGCTAAAGCTTCCCTGTACCGCAAACAGAGTATCATACTCACTACACT
ACTGTACGGCAAAGACCGTACAGGACCACTCACGGCCGGGAGTTGTCATT
CCTTGGGACCACAACCTATTTTGCGATTGTCTGGTTAACAAACAGCCC
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