mRNA_M-pyrifera_M_contig13213.5882.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13213.5882.1
Unique NamemRNA_M-pyrifera_M_contig13213.5882.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig13213.5882.1 vs. uniprot
Match: D8LQ80_ECTSI (Histone H1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ80_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 2.810e-29
Identity = 56/67 (83.58%), Postives = 64/67 (95.52%), Query Frame = 1 
Query:    1 MVFEAIKALKERNGSSIQAIKKHITSSHPTLNFTPHQMRSALKKGTEAGKFVKVKSSYKLSAEAKKP 201
            MVF+AIK LKERNGSSIQAIKK IT+++PTLNFTPHQMRSALKKG E+GKF+K+K+SYKLSAEAKKP
Sbjct:   11 MVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFIKMKASYKLSAEAKKP 77
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BLAST of mRNA_M-pyrifera_M_contig13213.5882.1 vs. uniprot
Match: A0A6H5KST0_9PHAE (H15 domain-containing protein n=6 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KST0_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 3.230e-29
Identity = 57/67 (85.07%), Postives = 64/67 (95.52%), Query Frame = 1 
Query:    1 MVFEAIKALKERNGSSIQAIKKHITSSHPTLNFTPHQMRSALKKGTEAGKFVKVKSSYKLSAEAKKP 201
            MVF+AIK LKERNGSSIQAIKK IT+++PTLNFTPHQMRSALKKG E+GKFVK+K+SYKLSAEAKKP
Sbjct:    1 MVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFVKMKASYKLSAEAKKP 67
[Close]
BLAST of mRNA_M-pyrifera_M_contig13213.5882.1 vs. uniprot
Match: D8LQ75_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ75_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 5.640e-29
Identity = 57/67 (85.07%), Postives = 63/67 (94.03%), Query Frame = 1 
Query:    1 MVFEAIKALKERNGSSIQAIKKHITSSHPTLNFTPHQMRSALKKGTEAGKFVKVKSSYKLSAEAKKP 201
            MVF+AIK+LKERNGSSIQAIKK IT+++P LNFTPHQMRSALKKG E GKF+KVKSSYKLSAEAKKP
Sbjct:    1 MVFDAIKSLKERNGSSIQAIKKSITATYPALNFTPHQMRSALKKGVETGKFIKVKSSYKLSAEAKKP 67
[Close]
BLAST of mRNA_M-pyrifera_M_contig13213.5882.1 vs. uniprot
Match: A0A6H5JHR9_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHR9_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 3.670e-27
Identity = 53/67 (79.10%), Postives = 62/67 (92.54%), Query Frame = 1 
Query:    1 MVFEAIKALKERNGSSIQAIKKHITSSHPTLNFTPHQMRSALKKGTEAGKFVKVKSSYKLSAEAKKP 201
            MVF+AIKALKER GSS+ A+KK I +++P+LNFTPHQMRSALKKGTE+GKF+KVKSSYKLS EAKKP
Sbjct:    1 MVFDAIKALKERGGSSLPALKKQIMATYPSLNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKP 67
[Close]
BLAST of mRNA_M-pyrifera_M_contig13213.5882.1 vs. uniprot
Match: D7G4I5_ECTSI (H15 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4I5_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 9.280e-27
Identity = 53/67 (79.10%), Postives = 62/67 (92.54%), Query Frame = 1 
Query:    1 MVFEAIKALKERNGSSIQAIKKHITSSHPTLNFTPHQMRSALKKGTEAGKFVKVKSSYKLSAEAKKP 201
            MVF+AIKALKER GSS+ A+KK I +++P+LNFTPHQMRSALKKGTE+GKF+KVKSSYKLS EAKKP
Sbjct:   12 MVFDAIKALKERGGSSLPALKKQIMATYPSLNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKP 78
[Close]
BLAST of mRNA_M-pyrifera_M_contig13213.5882.1 vs. uniprot
Match: A0A6H5KCU1_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCU1_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 1.400e-26
Identity = 54/67 (80.60%), Postives = 62/67 (92.54%), Query Frame = 1 
Query:    1 MVFEAIKALKERNGSSIQAIKKHITSSHPTLNFTPHQMRSALKKGTEAGKFVKVKSSYKLSAEAKKP 201
            MVF+AIK LKERNGSSIQAIKK IT+++PTLNFTPHQMR ALKKG E+GKF+K+K+SYKLS EAKKP
Sbjct:  104 MVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRGALKKGVESGKFIKMKASYKLSPEAKKP 170
[Close]
BLAST of mRNA_M-pyrifera_M_contig13213.5882.1 vs. uniprot
Match: D8LMF1_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMF1_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 2.050e-22
Identity = 48/67 (71.64%), Postives = 56/67 (83.58%), Query Frame = 1 
Query:    1 MVFEAIKALKERNGSSIQAIKKHITSSHPTLNFTPHQMRSALKKGTEAGKFVKVKSSYKLSAEAKKP 201
            M   AI ALKERNGSS+ AIKKHI +++PTLNF PHQ+R ALKKGTE G F+KVK+SYK+S EAKKP
Sbjct:    7 MAKVAILALKERNGSSVPAIKKHIQATYPTLNFLPHQLRGALKKGTETGTFIKVKASYKVSPEAKKP 73
[Close]
BLAST of mRNA_M-pyrifera_M_contig13213.5882.1 vs. uniprot
Match: D8LJB8_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJB8_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 5.120e-21
Identity = 48/67 (71.64%), Postives = 58/67 (86.57%), Query Frame = 1 
Query:    1 MVFEAIKALKERNGSSIQAIKKHITSSHPTLNFTPHQMRSALKKGTEAGKFVKVKSSYKLSAEAKKP 201
            M  EA+KALKERNGSS+ AIKKHIT+S+P+L FT H MRSALKKG E+GKF+KVK+SYKLSA  ++P
Sbjct:    7 MTIEAVKALKERNGSSLFAIKKHITASYPSLTFTAHFMRSALKKGVESGKFIKVKNSYKLSAYRQEP 73
[Close]
BLAST of mRNA_M-pyrifera_M_contig13213.5882.1 vs. uniprot
Match: A0A6H5K9S6_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9S6_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 2.160e-20
Identity = 43/61 (70.49%), Postives = 53/61 (86.89%), Query Frame = 1 
Query:    1 MVFEAIKALKERNGSSIQAIKKHITSSHPTLNFTPHQMRSALKKGTEAGKFVKVKSSYKLS 183
            MVF+AIK LKERNGSSIQA+KK IT+++P L+FTPHQMRSALKKG E GKF+KV+ +  L+
Sbjct:    1 MVFDAIKTLKERNGSSIQAMKKSITATYPALHFTPHQMRSALKKGVETGKFIKVRHALPLA 61
[Close]
BLAST of mRNA_M-pyrifera_M_contig13213.5882.1 vs. uniprot
Match: A0A6H5JIM8_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM8_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 9.920e-20
Identity = 46/62 (74.19%), Postives = 55/62 (88.71%), Query Frame = 1 
Query:    1 MVFEAIKALKERNGSSIQAIKKHITSSHPTLNFTPHQMRSALKKGTEAGKFVKVKSSYKLSA 186
            M  EA+KALKERNGSS+ AIKKHIT+S+P+L FT H +RSALKKG E+GKF+KVK+SYKLSA
Sbjct:    7 MTVEAVKALKERNGSSLFAIKKHITASYPSLTFTGHFLRSALKKGVESGKFIKVKNSYKLSA 68
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13213.5882.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ80_ECTSI2.810e-2983.58Histone H1 n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5KST0_9PHAE3.230e-2985.07H15 domain-containing protein n=6 Tax=Ectocarpus T... [more]
D8LQ75_ECTSI5.640e-2985.07H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JHR9_9PHAE3.670e-2779.10H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G4I5_ECTSI9.280e-2779.10H15 domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6H5KCU1_9PHAE1.400e-2680.60H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LMF1_ECTSI2.050e-2271.64H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LJB8_ECTSI5.120e-2171.64H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K9S6_9PHAE2.160e-2070.49H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JIM8_9PHAE9.920e-2074.19H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13213contigM-pyrifera_M_contig13213:5634..7072 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.5
Seed ortholog evalue2.3e-23
Seed eggNOG ortholog2880.D7G189
Preferred nameH1
KEGG koko:K11275
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044424,GO:0044464
EggNOG free text desc.Domain in histone families 1 and 5
EggNOG OGs2CYYI@1,2S79K@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons2
Model size498
Cds size498
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815811.034184-CDS-M-pyrifera_M_contig13213:5633..59721622815811.034184-CDS-M-pyrifera_M_contig13213:5633..5972Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13213 5634..5972 -
1692277581.9638925-CDS-M-pyrifera_M_contig13213:5633..59721692277581.9638925-CDS-M-pyrifera_M_contig13213:5633..5972Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13213 5634..5972 -
1622815811.0458255-CDS-M-pyrifera_M_contig13213:6913..70721622815811.0458255-CDS-M-pyrifera_M_contig13213:6913..7072Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13213 6914..7072 -
1692277581.9793863-CDS-M-pyrifera_M_contig13213:6913..70721692277581.9793863-CDS-M-pyrifera_M_contig13213:6913..7072Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13213 6914..7072 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13213.5882.1prot_M-pyrifera_M_contig13213.5882.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13213 5634..7072 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13213.5882.1

>prot_M-pyrifera_M_contig13213.5882.1 ID=prot_M-pyrifera_M_contig13213.5882.1|Name=mRNA_M-pyrifera_M_contig13213.5882.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=166bp
MVFEAIKALKERNGSSIQAIKKHITSSHPTLNFTPHQMRSALKKGTEAGK
FVKVKSSYKLSAEAKKPPPKKKVVKKVVKKVVKKKKPAAKKKVVKKVKAA
PKKKASTPKKAAKSATPKKAAAKKKTVTKKPAAKKATTPKKKPAAKKAAP
KKKPAAKKAAPAKKD*
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mRNA from alignment at M-pyrifera_M_contig13213:5634..7072-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13213.5882.1 ID=mRNA_M-pyrifera_M_contig13213.5882.1|Name=mRNA_M-pyrifera_M_contig13213.5882.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1439bp|location=Sequence derived from alignment at M-pyrifera_M_contig13213:5634..7072- (Macrocystis pyrifera P11B4 male)
ATGGTGTTCGAGGCAATCAAGGCTCTGAAGGAGCGCAACGGCTCCAGCAT
CCAGGCGATCAAGAAGCACATCACTTCGAGCCACCCCACGCTCAACTTCA
CCCCGCACCAGATGCGCAGCGCCCTCAAAAAGGGAACTGAGGCCGGCAAG
TTCGTCAAGGTAAGCACCCTGCGACGCCCCGCAGACACAAGTAGCAGGTC
TGGCTCTCTCATGCTGTCCCACATCGTACCCGTCTAACCGTGAGTGCCCC
CCTGCTGCATGCCTGCTCCCTTTGGCTCCCTAAACCATGGCTTGTTACTC
TCAGCTCGGACTACTTTTTTGTTCCGGGCCACGTGGCCCACCCTGTTTGG
TTGAAATCGAGTTCGTAGTAACCGGTAACGGATTTTTTTATTTCTTTTTT
CGCTCCTGACTTTCTGTTGACTTTTGAACAGTGAATACAAGAGGATACTC
CTATTAACAATCATATTAGTGTTCGCTGTTCGCAGTGCGCAACTCCTTGG
CTTGCCTGACTGCTGTCTGATGCGACAGCGCCATAATTTATTTCGTGAAT
ACGTAGATACATGTGGTTTCGACGATATTCGGCCCGAAGAAAGCACCTAA
AAGCACTCGTGCACCACCGACTGACTGATGTGACCAAACACACGTTTGCG
TTGTGTTGAACTTTTTTGTGGCAAATCTTTTTCTTCCCTCTGCTACCTTT
TTTTTCTGGTGGAGGTTTGTTACCCACCAGTACTGGTGAACGGCACGTGT
AGAGCTGTTGCGAGTATCACAGTAGTCCTTGGCGGCGTTGAAATCCGCCA
TGCGAGGCTGGGAATTTTATGATAAATGCTGCGTCCATACATGAACCCTG
TTGTTGATCTCAGTCCAAGAGCTATAAACCTTGCGCTTTGCCGCTTACTC
AGCTATTATATACGCGTGGTCACGGTCCAGGAGTAGATGGTGCGTAGTCG
ACGGGTTCGGAGCAACCGCCGCTCCTCCATGTATCCGGTTGTCGTGGTTT
TGTCGTGTAAATAACTCGCTCCGGTTATCCCCTGACTGATTAGAGCCCAA
ACGAGCTGCACTAATAATAATGACGTTTGGACTTGAAATTGACGTATCAG
GTGAAGAGCTCGTACAAGCTCTCTGCCGAGGCGAAGAAGCCCCCCCCGAA
GAAGAAGGTCGTGAAAAAGGTGGTGAAGAAGGTCGTGAAGAAGAAGAAGC
CCGCCGCCAAGAAGAAAGTGGTGAAGAAGGTCAAGGCAGCCCCCAAGAAG
AAGGCCTCCACCCCCAAGAAGGCCGCCAAGTCCGCCACTCCCAAGAAGGC
GGCGGCTAAGAAGAAGACCGTGACGAAGAAGCCTGCCGCCAAGAAGGCCA
CCACCCCCAAGAAGAAGCCCGCGGCTAAAAAGGCTGCTCCCAAGAAGAAG
CCTGCCGCCAAGAAGGCCGCCCCCGCCAAGAAGGATTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13213:5634..7072-

>mRNA_M-pyrifera_M_contig13213.5882.1 ID=mRNA_M-pyrifera_M_contig13213.5882.1|Name=mRNA_M-pyrifera_M_contig13213.5882.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=996bp|location=Sequence derived from alignment at M-pyrifera_M_contig13213:5634..7072- (Macrocystis pyrifera P11B4 male)
ATGGTGTTCGAGGCAATCAAGGCTCTGAAGGAGCGCAACGGCTCCAGCAT
CCAGGCGATCAAGAAGCACATCACTTCGAGCCACCCCACGCTCAACTTCA
CCCCGCACCAGATGCGCAGCGCCCTCAAAAAGGGAACTGAGGCCGGCAAG
TTCGTCAAGATGGTGTTCGAGGCAATCAAGGCTCTGAAGGAGCGCAACGG
CTCCAGCATCCAGGCGATCAAGAAGCACATCACTTCGAGCCACCCCACGC
TCAACTTCACCCCGCACCAGATGCGCAGCGCCCTCAAAAAGGGAACTGAG
GCCGGCAAGTTCGTCAAGGTGAAGAGCTCGTACAAGCTCTCTGCCGAGGC
GAAGAAGCCCCCCCCGAAGAAGAAGGTCGTGAAAAAGGTGGTGAAGAAGG
TCGTGAAGAAGAAGAAGCCCGCCGCCAAGAAGAAAGTGGTGAAGAAGGTC
AAGGCAGCCCCCAAGAAGAAGGCCTCCACCCCCAAGAAGGCCGCCAAGTC
CGCCACTCCCAAGAAGGCGGCGGCTAAGAAGAAGACCGTGACGAAGAAGC
CTGCCGCCAAGAAGGCCACCACCCCCAAGAAGAAGCCCGCGGCTAAAAAG
GCTGCTCCCAAGAAGAAGCCTGCCGCCAAGAAGGCCGCCCCCGCCAAGAA
GGATTAAGTGAAGAGCTCGTACAAGCTCTCTGCCGAGGCGAAGAAGCCCC
CCCCGAAGAAGAAGGTCGTGAAAAAGGTGGTGAAGAAGGTCGTGAAGAAG
AAGAAGCCCGCCGCCAAGAAGAAAGTGGTGAAGAAGGTCAAGGCAGCCCC
CAAGAAGAAGGCCTCCACCCCCAAGAAGGCCGCCAAGTCCGCCACTCCCA
AGAAGGCGGCGGCTAAGAAGAAGACCGTGACGAAGAAGCCTGCCGCCAAG
AAGGCCACCACCCCCAAGAAGAAGCCCGCGGCTAAAAAGGCTGCTCCCAA
GAAGAAGCCTGCCGCCAAGAAGGCCGCCCCCGCCAAGAAGGATTAA
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