mRNA_M-pyrifera_M_contig13208.5881.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13208.5881.1
Unique NamemRNA_M-pyrifera_M_contig13208.5881.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13208.5881.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13208contigM-pyrifera_M_contig13208:7090..8799 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons2
Model size294
Cds size294
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815810.981566-CDS-M-pyrifera_M_contig13208:7089..72001622815810.981566-CDS-M-pyrifera_M_contig13208:7089..7200Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13208 7090..7200 -
1692277581.9394314-CDS-M-pyrifera_M_contig13208:7089..72001692277581.9394314-CDS-M-pyrifera_M_contig13208:7089..7200Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13208 7090..7200 -
1622815810.9960515-CDS-M-pyrifera_M_contig13208:8616..87991622815810.9960515-CDS-M-pyrifera_M_contig13208:8616..8799Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13208 8617..8799 -
1692277581.9509983-CDS-M-pyrifera_M_contig13208:8616..87991692277581.9509983-CDS-M-pyrifera_M_contig13208:8616..8799Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13208 8617..8799 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13208.5881.1prot_M-pyrifera_M_contig13208.5881.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13208 7090..8799 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13208.5881.1

>prot_M-pyrifera_M_contig13208.5881.1 ID=prot_M-pyrifera_M_contig13208.5881.1|Name=mRNA_M-pyrifera_M_contig13208.5881.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=98bp
IDRFRLFSSLFALGAAGFEPSCLSTLRSRPPPPVPLILSGGGAGGRSRGG
RQGAVRGARASNNDGAPSDAHEQVGEHRAQAQAPFFPRGGRRGRRRSG
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mRNA from alignment at M-pyrifera_M_contig13208:7090..8799-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13208.5881.1 ID=mRNA_M-pyrifera_M_contig13208.5881.1|Name=mRNA_M-pyrifera_M_contig13208.5881.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1710bp|location=Sequence derived from alignment at M-pyrifera_M_contig13208:7090..8799- (Macrocystis pyrifera P11B4 male)
ATCGATCGTTTTCGGTTGTTCTCGTCCTTATTCGCGCTTGGTGCTGCTGG
CTTCGAGCCTTCGTGTCTCTCTACCTTGCGCTCTCGTCCTCCCCCTCCGG
TCCCCCTAATTTTGTCAGGAGGAGGAGCAGGAGGAAGAAGCCGTGGAGGA
AGACAAGGAGCAGTACGAGGAGCTAGAGCAAGCGTGAGTTGAACGAGTTT
GGATGCAAACTCACCCCTCGTGCGACTCGCCAAGCACCCTGACGGTGCTT
CGCCGCTTGGCGCAAACAATGTCTGCGTCGTCGGTGAATACCTCAAACGT
GCTCCGTCCCGGCATTGTAGGGAAGCGAGAGTGTATGGTAATATCAAACG
ACTACGGACATTCGTGCCATGAGTACCCCCCCGCTCCTCCCTCGCCTGCT
TCCGGGTGGCCTTGTACAAGGCAAGTGATTCGCCTCCGCCGGGGCCCTGC
CACCACCGTTGTGCGGTATTTTTCAGGCAGTACAGCTGTCCCTAGGAACT
AACTCACTCACTCACTCGCTTGCAAGCAGACTACCGTGTAGATAGATGCG
TCTGCTATCGTGAACTTTGTGTTCGTTGGTAGGTCGTTTTTTTTGGGAGA
ATCGCACCAAAAATCCGTTAAAAAAAAACAGAAGGAACGCTTGTATTTTT
TTTTTTTTTTTTTCCCCTTCAAGGTGAGAAATTGTGTCCCTTTACGTTCC
GGCACAATAGAGGTATGACATATAGATGAATCTCGGTCGGCGATTCGTTG
AAAGGGGGTGCGTACGAGGTGTGCACACTATCCTGACTTTTGTTTTGGGC
GCGGCGTAAAAGATGAAACTCGCACGCACTCATGTTCATAAGACCATTTC
GACCGGTCCTTTTCGGACAGTTCATTCATGCCCCCCTCCCCCCCCCCCCC
GCGCGCGCTTTTGCGTGCGCTCCTCCGTATCACACGGTGTGACAAAATAA
CAGACACCCTTACGGACGACTTTCAAAGCTGATTTTTTCTCTCTCCACAT
CGGGGGTGTGTGGGGGGTGCTAATACAGCCGAGCGACGATTCTCTGGGTC
GATATCTCGACGATATGTCTCTCTTCCCGAAGCCGCCATGTTCGTTGTGT
GCGCCCTGTTAGGCCCTTAAGGCATGGTTTGGAGAGAATCGCCTCTGAAA
CTTACCACCCGTGTGATAGGGGTGGGTTGTCTTATCACCCGTGTGATGAG
GGTGTGTTGTCTTTTCCCCCGTGTTTTGGGAGTGTGTTGTCTCATCGCTC
GTGTGATGGGGGTCTGTTATCTTATCACCCGTGTGAGGTGGGCGTGTGAT
CTTACTAACCGTGTGATTAGGGGTGTATCTTGTCACCCGTGTGATGAGGG
CGTGTTATCTTATCGGGGGGTGGATGATCTTATCACCCGTGTCATGGGGG
TGGGTTTATCTCATCACCCGTGTGATTGGGGGTGGGTTATCTCATCTCCC
GTGTTGAGGGGGTGTGTTATGTTATCACCCGTGTGATATGGTACGTCATT
GTGTATTTTATTGTGACCACATTATATCCCGCCCTCCGAAAATCATGATT
CGTGCTTTACCGTCGTATTTGCGTCCCGTAATTTTTCGCCTCGTCACAGA
ACAATGATGGGGCGCCTAGCGACGCTCATGAACAAGTCGGAGAGCATAGG
GCGCAAGCGCAGGCGCCCTTCTTCCCCCGCGGGGGGCGGAGAGGGAGAAG
GAGGAGCGGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13208:7090..8799-

>mRNA_M-pyrifera_M_contig13208.5881.1 ID=mRNA_M-pyrifera_M_contig13208.5881.1|Name=mRNA_M-pyrifera_M_contig13208.5881.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=588bp|location=Sequence derived from alignment at M-pyrifera_M_contig13208:7090..8799- (Macrocystis pyrifera P11B4 male)
ATCGATCGTTTTCGGTTGTTCTCGTCCTTATTCGCGCTTGGTGCTGCTGG
CTTCGAGCCTTCGTGTCTCTCTACCTTGCGCTCTCGTCCTCCCCCTCCGG
TCCCCCTAATTTTGTCAGGAGGAGGAGCAGGAGGAAGAAGCCGTGGAGGA
AGACAAGGAGCAGTACGAGGAGCTAGAGCAAGCATCGATCGTTTTCGGTT
GTTCTCGTCCTTATTCGCGCTTGGTGCTGCTGGCTTCGAGCCTTCGTGTC
TCTCTACCTTGCGCTCTCGTCCTCCCCCTCCGGTCCCCCTAATTTTGTCA
GGAGGAGGAGCAGGAGGAAGAAGCCGTGGAGGAAGACAAGGAGCAGTACG
AGGAGCTAGAGCAAGCAACAATGATGGGGCGCCTAGCGACGCTCATGAAC
AAGTCGGAGAGCATAGGGCGCAAGCGCAGGCGCCCTTCTTCCCCCGCGGG
GGGCGGAGAGGGAGAAGGAGGAGCGGGAACAATGATGGGGCGCCTAGCGA
CGCTCATGAACAAGTCGGAGAGCATAGGGCGCAAGCGCAGGCGCCCTTCT
TCCCCCGCGGGGGGCGGAGAGGGAGAAGGAGGAGCGGG
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