mRNA_M-pyrifera_M_contig13190.5875.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13190.5875.1
Unique NamemRNA_M-pyrifera_M_contig13190.5875.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig13190.5875.1 vs. uniprot
Match: D7FRK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRK2_ECTSI)

HSP 1 Score: 144 bits (362), Expect = 3.890e-41
Identity = 70/89 (78.65%), Postives = 80/89 (89.89%), Query Frame = 1
Query:    1 GLSPLAPDQWQFFLVSYAALFAINNVLRLPRFALSVSLAPAFDRFINFLMRRTGRGKAFATGLCVFLVNVCGTLSLMATGIVLASIFSG 267
            GLSPL+P QWQ FLVSYA L+AINNVLR+PRFALSVSLAPAFDRFI FLM++TGRGK  ATGLCVFLVN  GT +L++TGI+LAS+FSG
Sbjct:  146 GLSPLSPGQWQVFLVSYATLWAINNVLRVPRFALSVSLAPAFDRFIEFLMKKTGRGKGVATGLCVFLVNFLGTFALLSTGILLASMFSG 234          
BLAST of mRNA_M-pyrifera_M_contig13190.5875.1 vs. uniprot
Match: A0A6H5L4N7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4N7_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 3.480e-40
Identity = 70/89 (78.65%), Postives = 79/89 (88.76%), Query Frame = 1
Query:    1 GLSPLAPDQWQFFLVSYAALFAINNVLRLPRFALSVSLAPAFDRFINFLMRRTGRGKAFATGLCVFLVNVCGTLSLMATGIVLASIFSG 267
            GLSPLAP QWQ FLVSYA L+AINNVLR+PRFALSVSLAPAFDRFI FLM+++GRGK  ATGLCV LVN+ GT  L++TGI+LASIFSG
Sbjct:  177 GLSPLAPGQWQVFLVSYATLWAINNVLRVPRFALSVSLAPAFDRFIEFLMKKSGRGKGVATGLCVVLVNILGTFVLLSTGILLASIFSG 265          
BLAST of mRNA_M-pyrifera_M_contig13190.5875.1 vs. uniprot
Match: A0A835YJB4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJB4_9STRA)

HSP 1 Score: 115 bits (289), Expect = 5.150e-30
Identity = 56/89 (62.92%), Postives = 68/89 (76.40%), Query Frame = 1
Query:    1 GLSPLAPDQWQFFLVSYAALFAINNVLRLPRFALSVSLAPAFDRFINFLMRRTGRGKAFATGLCVFLVNVCGTLSLMATGIVLASIFSG 267
            GLSPLAP QWQFFL  Y  LF  NN++R  R ALS++LAPAFDR I F+M +T R +A AT +CVF VNV GT +LM+ GI+LAS+FSG
Sbjct:  163 GLSPLAPGQWQFFLSVYGGLFVFNNIIRPARLALSLALAPAFDRLIAFIMAKTKRSRAVATAICVFFVNVLGTTALMSGGILLASLFSG 251          
BLAST of mRNA_M-pyrifera_M_contig13190.5875.1 vs. uniprot
Match: A0A6V1QBW0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QBW0_HETAK)

HSP 1 Score: 101 bits (252), Expect = 1.750e-24
Identity = 48/89 (53.93%), Postives = 61/89 (68.54%), Query Frame = 1
Query:    1 GLSPLAPDQWQFFLVSYAALFAINNVLRLPRFALSVSLAPAFDRFINFLMRRTGRGKAFATGLCVFLVNVCGTLSLMATGIVLASIFSG 267
            GLSPLAP QW  FL  Y   F + NV+R  RFA SV + P FDR + F+M+RTG  K  A G+ VFLVN+CGT +L+ TG+ LAS+ +G
Sbjct:  155 GLSPLAPGQWPQFLAVYGGFFVVQNVIRPLRFAFSVFMTPVFDRMVAFIMKRTGLSKPKAFGVTVFLVNICGTFTLLFTGVTLASLAAG 243          
BLAST of mRNA_M-pyrifera_M_contig13190.5875.1 vs. uniprot
Match: A0A7S1ICX9_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1ICX9_9EUGL)

HSP 1 Score: 90.1 bits (222), Expect = 1.540e-20
Identity = 42/89 (47.19%), Postives = 62/89 (69.66%), Query Frame = 1
Query:    1 GLSPLAPDQWQFFLVSYAALFAINNVLRLPRFALSVSLAPAFDRFINFLMRRTGRGKAFATGLCVFLVNVCGTLSLMATGIVLASIFSG 267
            G+SPL   QW  FL+ Y   +AINNV+R  R +LS+++AP F+R + FL R+TG  +  A+ L VFLVN+CGT +L+  G+ +AS+ +G
Sbjct:  111 GVSPLVKGQWSKFLIIYVGFYAINNVIRPLRVSLSIAIAPLFERAVKFLERKTGFNRRNASLLLVFLVNICGTCTLLFLGVSIASLLAG 199          
BLAST of mRNA_M-pyrifera_M_contig13190.5875.1 vs. uniprot
Match: A0A7S4CVH7_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4CVH7_9EUGL)

HSP 1 Score: 86.3 bits (212), Expect = 2.710e-19
Identity = 39/89 (43.82%), Postives = 64/89 (71.91%), Query Frame = 1
Query:    1 GLSPLAPDQWQFFLVSYAALFAINNVLRLPRFALSVSLAPAFDRFINFLMRRTGRGKAFATGLCVFLVNVCGTLSLMATGIVLASIFSG 267
            GL+PLA  QW  FL+ Y   +A+NN+LR  R ++++++AP F++ ++FL ++TG G+  ++ L VFLVNVCGT SL+  G  +A++ +G
Sbjct:   86 GLTPLAAGQWSKFLLIYVGCYAVNNLLRPLRVSIAIAIAPYFEKAVHFLEKKTGFGRRASSALLVFLVNVCGTCSLLFFGASVATVAAG 174          
BLAST of mRNA_M-pyrifera_M_contig13190.5875.1 vs. uniprot
Match: A0A7S0YP80_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YP80_9CRYP)

HSP 1 Score: 82.4 bits (202), Expect = 5.910e-17
Identity = 43/95 (45.26%), Postives = 59/95 (62.11%), Query Frame = 1
Query:    1 GLSPLAPDQWQFFLVSYAALFAINNVLRLPRFALSVSLAPAFDRFINFLMRRTGR------GKAFATGLCVFLVNVCGTLSLMATGIVLASIFSG 267
            GLSPLA  QW  FL  Y   +A+ N++R  RFALSV++AP F+RF+ F+ +R          K  A G+ VFLVN+ GTLS +  G+ LA+  +G
Sbjct:  184 GLSPLAAGQWPKFLAVYGGFWAVLNIIRPARFALSVAIAPVFERFVTFVQKRASAVTKKEVPKPVAFGIVVFLVNLLGTLSYLFLGLTLATSIAG 278          
BLAST of mRNA_M-pyrifera_M_contig13190.5875.1 vs. uniprot
Match: A0A6T8J4B9_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6T8J4B9_HEMAN)

HSP 1 Score: 79.0 bits (193), Expect = 1.100e-15
Identity = 43/95 (45.26%), Postives = 57/95 (60.00%), Query Frame = 1
Query:    1 GLSPLAPDQWQFFLVSYAALFAINNVLRLPRFALSVSLAPAFDRFINFLMRRTGR------GKAFATGLCVFLVNVCGTLSLMATGIVLASIFSG 267
            GLSPLA  QW  FL  Y   +A  N++R  RFALSV +AP F++F+ F+ +R          K  A G+ VFLVN  GTLS +  G+ LA+ F+G
Sbjct:  178 GLSPLAAGQWPKFLAVYGGFWAFLNLVRPARFALSVGIAPVFEKFVTFVQKRASDITKKEIPKPAAFGIVVFLVNFVGTLSYLFFGLTLATSFAG 272          
BLAST of mRNA_M-pyrifera_M_contig13190.5875.1 vs. uniprot
Match: A0A061QVU3_9CHLO (Uncharacterized protein n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QVU3_9CHLO)

HSP 1 Score: 71.2 bits (173), Expect = 8.600e-13
Identity = 36/90 (40.00%), Postives = 54/90 (60.00%), Query Frame = 1
Query:    1 GLSPLAPDQWQFFLVSYAALFA-INNVLRLPRFALSVSLAPAFDRFINFLMRRTGRGKAFATGLCVFLVNVCGTLSLMATGIVLASIFSG 267
            GLSPL   QW  +L++Y AL+A +  VLR  R  ++  + P FD+ +++L  +    +  A G  VFLVN CGTLSL+A  +   S+ +G
Sbjct:  186 GLSPLTXGQWPQYLLAYVALYATVGTVLRPIRVMVAAGITPVFDKVVSYLQEKLKANRVVAIGTTVFLVNFCGTLSLLAIALGGTSLATG 275          
BLAST of mRNA_M-pyrifera_M_contig13190.5875.1 vs. uniprot
Match: A0A7S2TNT9_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TNT9_9EUKA)

HSP 1 Score: 68.9 bits (167), Expect = 5.170e-12
Identity = 41/90 (45.56%), Postives = 53/90 (58.89%), Query Frame = 1
Query:    1 GLSPLAPDQWQFFLVSYAALFAI-NNVLRLPRFALSVSLAPAFDRFINFLMRRTGRGKAFATGLCVFLVNVCGTLSLMATGIVLASIFSG 267
            GLSPLAP QW  FL     L+A+  N+LR  R ALSV++AP FDR I+FL  R    ++ A    V L N    ++ M +GI LAS+  G
Sbjct:  156 GLSPLAPGQWSKFLAVQVGLYAVFGNLLRPLRLALSVAIAPMFDRIISFLQARLKIPRSVAILANVILFNFIINITFMVSGIWLASVIVG 245          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13190.5875.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FRK2_ECTSI3.890e-4178.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4N7_9PHAE3.480e-4078.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YJB4_9STRA5.150e-3062.92Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6V1QBW0_HETAK1.750e-2453.93Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1ICX9_9EUGL1.540e-2047.19Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S4CVH7_9EUGL2.710e-1943.82Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S0YP80_9CRYP5.910e-1745.26Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A6T8J4B9_HEMAN1.100e-1545.26Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A061QVU3_9CHLO8.600e-1340.00Uncharacterized protein n=1 Tax=Tetraselmis sp. GS... [more]
A0A7S2TNT9_9EUKA5.170e-1245.56Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13190contigM-pyrifera_M_contig13190:4477..5461 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score142.1
Seed ortholog evalue1.2e-31
Seed eggNOG ortholog2880.D7FRK2
Hectar predicted targeting categorysignal anchor
EggNOG OGs2CBM0@1,2S8NT@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size267
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815810.3371544-CDS-M-pyrifera_M_contig13190:4476..45591622815810.3371544-CDS-M-pyrifera_M_contig13190:4476..4559Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13190 4477..4559 +
1692277581.6150458-CDS-M-pyrifera_M_contig13190:4476..45591692277581.6150458-CDS-M-pyrifera_M_contig13190:4476..4559Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13190 4477..4559 +
1622815810.3466842-CDS-M-pyrifera_M_contig13190:5277..54611622815810.3466842-CDS-M-pyrifera_M_contig13190:5277..5461Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13190 5278..5461 +
1692277581.626385-CDS-M-pyrifera_M_contig13190:5277..54611692277581.626385-CDS-M-pyrifera_M_contig13190:5277..5461Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13190 5278..5461 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13190.5875.1prot_M-pyrifera_M_contig13190.5875.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13190 4477..5461 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13190.5875.1

>prot_M-pyrifera_M_contig13190.5875.1 ID=prot_M-pyrifera_M_contig13190.5875.1|Name=mRNA_M-pyrifera_M_contig13190.5875.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=89bp
GLSPLAPDQWQFFLVSYAALFAINNVLRLPRFALSVSLAPAFDRFINFLM
RRTGRGKAFATGLCVFLVNVCGTLSLMATGIVLASIFSG
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mRNA from alignment at M-pyrifera_M_contig13190:4477..5461+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13190.5875.1 ID=mRNA_M-pyrifera_M_contig13190.5875.1|Name=mRNA_M-pyrifera_M_contig13190.5875.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=985bp|location=Sequence derived from alignment at M-pyrifera_M_contig13190:4477..5461+ (Macrocystis pyrifera P11B4 male)
GGCCTGTCACCCCTTGCACCTGATCAGTGGCAGTTCTTCCTCGTGAGCTA CGCGGCTTTGTTCGCAATCAACAATGTGCTCAGGTGGGTAGCGCGCGACA CAGGGTCGTTTGATAACACTTTGACGCTATGATGACTGTGACGGTGGTAT TGATAGTGATTGGGGTGAAGCAATGACGATGATCATGGCAATGATGGTCA TCATAGTGATGATGATGATGATGATGATCACGATCACGACTATGACGAGA ATGATGATGGTGGTCGTGGTGCTATGTTTGTTTTATGTGGCGGTATTTCG CTTTGTTTTGGGAACGCACACGGCCTATTGCATGTCTGCGGCAGCCTTGC CTCAGTTGTGTTCACTACTACGAGTATACATAGCATTCTAGGCATCTGAC GGCAGTCTGACCAGCCTGGTGGCTGCAGATTTCTACGAGCCAAGCGAGTT GGCATGCCTTACTTTTTTAGCTGGGTGAAGCCGCAGATCTCAAATAAAAA TCATAGTCGGAGATCCGCACCGTCCGACCGAAAATCTCGGAATCAAGATT TTAGTTGACTGCTTTCCACCTGCACACACATTTAACTGCCTTCGTACAAA TATACACCAGCGCGAGTGCCGAGCGAGAGCTTCCCTATACTTTTCGCATC CAACACAGGTGTAACATGGCCATCAGTGCGGCGTATTTTCATGGTGTGTG CGTGACATACAGATTAGATATCTCCGCGCGAGACATGCACTTTTGTAACG TTATTTTCCCTTCGTCGTCGCTCTCGTCACGGTGTGTATTTTTCCGTGTA GGTTGCCGCGGTTCGCCCTCTCGGTCAGCCTGGCTCCCGCCTTCGACCGA TTCATCAATTTCCTCATGAGGAGAACAGGCAGGGGCAAGGCTTTCGCCAC TGGCCTCTGCGTTTTCTTGGTGAACGTCTGTGGCACCCTTTCACTAATGG CCACCGGCATCGTGCTTGCTTCCATTTTCTCGGGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13190:4477..5461+

>mRNA_M-pyrifera_M_contig13190.5875.1 ID=mRNA_M-pyrifera_M_contig13190.5875.1|Name=mRNA_M-pyrifera_M_contig13190.5875.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=534bp|location=Sequence derived from alignment at M-pyrifera_M_contig13190:4477..5461+ (Macrocystis pyrifera P11B4 male)
GGCCTGTCACCCCTTGCACCTGATCAGTGGCAGTTCTTCCTCGTGAGCTA
CGCGGCTTTGTTCGCAATCAACAATGTGCTCAGGGCCTGTCACCCCTTGC
ACCTGATCAGTGGCAGTTCTTCCTCGTGAGCTACGCGGCTTTGTTCGCAA
TCAACAATGTGCTCAGGTTGCCGCGGTTCGCCCTCTCGGTCAGCCTGGCT
CCCGCCTTCGACCGATTCATCAATTTCCTCATGAGGAGAACAGGCAGGGG
CAAGGCTTTCGCCACTGGCCTCTGCGTTTTCTTGGTGAACGTCTGTGGCA
CCCTTTCACTAATGGCCACCGGCATCGTGCTTGCTTCCATTTTCTCGGGT
GTTGCCGCGGTTCGCCCTCTCGGTCAGCCTGGCTCCCGCCTTCGACCGAT
TCATCAATTTCCTCATGAGGAGAACAGGCAGGGGCAAGGCTTTCGCCACT
GGCCTCTGCGTTTTCTTGGTGAACGTCTGTGGCACCCTTTCACTAATGGC
CACCGGCATCGTGCTTGCTTCCATTTTCTCGGGT
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