mRNA_M-pyrifera_M_contig1315.5864.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1315.5864.1
Unique NamemRNA_M-pyrifera_M_contig1315.5864.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig1315.5864.1 vs. uniprot
Match: D7FLY1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLY1_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 2.060e-16
Identity = 40/61 (65.57%), Postives = 48/61 (78.69%), Query Frame = 1 
Query:    1 RYRAEREEIYGEVVDMVYYDVKYMLGGGEKRVKATYITCTPNVTVARQSRPRDRFTVPVPE 183
            +Y AE EE+ GE+V M Y+D+KY+LGG EKRV+ TYI+CTP    ARQS PRDRFTV VPE
Sbjct:  350 KYTAE-EEVCGEMVQMSYFDIKYLLGGSEKRVQETYISCTPLEIAARQSAPRDRFTVEVPE 409
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BLAST of mRNA_M-pyrifera_M_contig1315.5864.1 vs. uniprot
Match: A0A6H5JBG0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBG0_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 1.840e-15
Identity = 38/61 (62.30%), Postives = 47/61 (77.05%), Query Frame = 1 
Query:    1 RYRAEREEIYGEVVDMVYYDVKYMLGGGEKRVKATYITCTPNVTVARQSRPRDRFTVPVPE 183
            +Y  E EE+ GE+V M Y+D+KY+LGG EK+V+ TYI+CTP    ARQS PRDRFTV VPE
Sbjct:  513 KYTVE-EEVCGEMVQMSYFDIKYLLGGSEKKVQETYISCTPLEIAARQSTPRDRFTVEVPE 572
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1315.5864.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FLY1_ECTSI2.060e-1665.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JBG0_9PHAE1.840e-1562.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1315contigM-pyrifera_M_contig1315:139..336 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.6
Seed ortholog evalue1.5e-13
Seed eggNOG ortholog2880.D7FLY1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.function. Source PGD
EggNOG OGs29J8N@1,2RSGS@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size198
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815809.163793-CDS-M-pyrifera_M_contig1315:138..3361622815809.163793-CDS-M-pyrifera_M_contig1315:138..336Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1315 139..336 -
1692277580.8018486-CDS-M-pyrifera_M_contig1315:138..3361692277580.8018486-CDS-M-pyrifera_M_contig1315:138..336Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1315 139..336 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1315.5864.1prot_M-pyrifera_M_contig1315.5864.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1315 139..336 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1315.5864.1

>prot_M-pyrifera_M_contig1315.5864.1 ID=prot_M-pyrifera_M_contig1315.5864.1|Name=mRNA_M-pyrifera_M_contig1315.5864.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=66bp
RYRAEREEIYGEVVDMVYYDVKYMLGGGEKRVKATYITCTPNVTVARQSR
PRDRFTVPVPEVRSSR
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mRNA from alignment at M-pyrifera_M_contig1315:139..336-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1315.5864.1 ID=mRNA_M-pyrifera_M_contig1315.5864.1|Name=mRNA_M-pyrifera_M_contig1315.5864.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=198bp|location=Sequence derived from alignment at M-pyrifera_M_contig1315:139..336- (Macrocystis pyrifera P11B4 male)
CGTTATCGCGCAGAGAGAGAAGAAATCTATGGCGAGGTTGTGGACATGGT
CTACTACGACGTGAAGTACATGCTTGGTGGCGGCGAAAAGCGCGTGAAGG
CGACGTACATCACGTGTACCCCGAATGTTACTGTGGCGCGTCAGTCCCGC
CCTAGAGACCGGTTTACTGTGCCCGTGCCTGAGGTAAGGAGTTCTAGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1315:139..336-

>mRNA_M-pyrifera_M_contig1315.5864.1 ID=mRNA_M-pyrifera_M_contig1315.5864.1|Name=mRNA_M-pyrifera_M_contig1315.5864.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig1315:139..336- (Macrocystis pyrifera P11B4 male)
CGTTATCGCGCAGAGAGAGAAGAAATCTATGGCGAGGTTGTGGACATGGT
CTACTACGACGTGAAGTACATGCTTGGTGGCGGCGAAAAGCGCGTGAAGG
CGACGTACATCACGTGTACCCCGAATGTTACTGTGGCGCGTCAGTCCCGC
CCTAGAGACCGGTTTACTGTGCCCGTGCCTGAGGTAAGGAGTTCTAGACG
TTATCGCGCAGAGAGAGAAGAAATCTATGGCGAGGTTGTGGACATGGTCT
ACTACGACGTGAAGTACATGCTTGGTGGCGGCGAAAAGCGCGTGAAGGCG
ACGTACATCACGTGTACCCCGAATGTTACTGTGGCGCGTCAGTCCCGCCC
TAGAGACCGGTTTACTGTGCCCGTGCCTGAGGTAAGGAGTTCTAGA
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