mRNA_M-pyrifera_M_contig13146.5863.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig13146.5863.1 vs. uniprot
Match: D7FTC5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTC5_ECTSI) HSP 1 Score: 106 bits (264), Expect = 2.500e-24 Identity = 62/144 (43.06%), Postives = 77/144 (53.47%), Query Frame = 1
Query: 1 RCRMSASLATGLVGTQENSLLNDFFSCMGFLPLTCQSTIRSAMVSLLISAKMSGPPELDRIVGHA------------------------SGANALVSASAAPALSSQH---------NDPATCMFWCAVALGGLTQGRPIDAVS 333
R R+ SLATGLVGTQEN+ L DFF CMGFLPLTCQST+R AMV +L S+ GH G ++VS + +P S + +DP+T MFWCAVALG LTQGRP+ +V+
Sbjct: 34 RGRLGMSLATGLVGTQENAFLGDFFGCMGFLPLTCQSTVREAMVRILFSSDNDNNKGFSSSTGHTWPHPVAPASAMMAMDEEKFCYGGGEGDMSIVSTARSPVSSMKQWEQQQQLSPSDPSTSMFWCAVALGALTQGRPVRSVA 177
BLAST of mRNA_M-pyrifera_M_contig13146.5863.1 vs. uniprot
Match: D8LCV1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCV1_ECTSI) HSP 1 Score: 93.6 bits (231), Expect = 2.500e-20 Identity = 52/116 (44.83%), Postives = 68/116 (58.62%), Query Frame = 1
Query: 1 RCRMSASLATGLVGTQENSLLNDFFSCMGFLPLTCQSTIRSAMVSLLISAKMSGPPELDRIVGHASGANALVSASAAPALSSQHN----DPATCMFWCAVALGGLTQGRPIDAVSS 336
RCR+SAS ATGLVG QEN+ L+DFF C+GFLPLT S IR MV++++ S V+ + +S N DP+ C FWCAVALG L +G PI++V+S
Sbjct: 10 RCRLSASPATGLVGMQENAFLSDFFGCVGFLPLTTPSHIRETMVTIMLPRASSQQSVFGDDCDEGGHYFEAVAPGGDLSKTSARNQFPMDPSACTFWCAVALGALAKGSPIESVTS 125
BLAST of mRNA_M-pyrifera_M_contig13146.5863.1 vs. uniprot
Match: D8LCV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCV4_ECTSI) HSP 1 Score: 92.8 bits (229), Expect = 2.750e-20 Identity = 55/122 (45.08%), Postives = 70/122 (57.38%), Query Frame = 1
Query: 1 RCRMSASLATGLVGTQENSLLNDFFSCMGFLPLTCQSTIRSAMVSLLISAKMSGPPELDR--IVGHASGANALVSASAAP--------ALSSQHNDPATCMFWCAVALGGLTQGRPIDAVSS 336
RCR+SAS ATGLV QEN+ L+DFF C+GFLPLT S IR MV +++ PP + + G S + AP A S DP+ C FWCAVALG L +G PI++V+S
Sbjct: 6 RCRLSASPATGLVEMQENTFLSDFFGCIGFLPLTTPSQIRETMVKIMV------PPASSQQSVFGDGSDKRGHYFEAVAPGGDLSKISAGSQLPMDPSACTFWCAVALGALVKGSPIESVTS 121
BLAST of mRNA_M-pyrifera_M_contig13146.5863.1 vs. uniprot
Match: D8LU09_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU09_ECTSI) HSP 1 Score: 93.2 bits (230), Expect = 8.950e-20 Identity = 51/114 (44.74%), Postives = 70/114 (61.40%), Query Frame = 1
Query: 1 RCRMSASLATGLVGTQENSLLNDFFSCMGFLPLTCQSTIRSAMVSLLISAKMSGPPELDRIVGHASGANALVSASAAPALSSQHN---DPATCMFWCAVALGGLTQGRPIDAVS 333
R R++AS ATGLVG QEN+ L+DFF C+GF+PLT S IR MV ++ S P + I G G ++V A S + DP+TC FWCA+ALG L +G P+++V+
Sbjct: 6 RFRLTASPATGLVGMQENAFLSDFFGCVGFVPLTSHSHIRETMVKIMASP---APLQQSAIGGAFGGVGSMVRARCWNKASEKPQLPMDPSTCTFWCAIALGALAKGCPVESVA 116
BLAST of mRNA_M-pyrifera_M_contig13146.5863.1 vs. uniprot
Match: A0A6H5JYW4_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYW4_9PHAE) HSP 1 Score: 91.7 bits (226), Expect = 3.310e-19 Identity = 51/114 (44.74%), Postives = 69/114 (60.53%), Query Frame = 1
Query: 1 RCRMSASLATGLVGTQENSLLNDFFSCMGFLPLTCQSTIRSAMVSLLISAKMSGPPELDRIVGHASGANALVSASAAPALSSQHN---DPATCMFWCAVALGGLTQGRPIDAVS 333
R R+SAS ATGLVG QEN+ L+DFF C+GF+PLT S IR MV ++ S P + I G S +V A S ++ D +TC FWCA+ALG L +G P+++V+
Sbjct: 110 RFRLSASPATGLVGMQENAFLSDFFGCVGFVPLTSHSHIRETMVRIMASP---APLQQSAIGGACSEVGTMVRAPCWNEASERNQLPMDASTCTFWCAIALGALAKGSPVESVA 220
BLAST of mRNA_M-pyrifera_M_contig13146.5863.1 vs. uniprot
Match: A0A6H5L0W7_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0W7_9PHAE) HSP 1 Score: 90.1 bits (222), Expect = 1.170e-18 Identity = 53/119 (44.54%), Postives = 70/119 (58.82%), Query Frame = 1
Query: 1 RCRMSASLATGLVGTQENSLLNDFFSCMGFLPLTCQSTIRSAMVSLLISAKMSGPPELDRIVGHASGANALVSAS-----AAPALSSQH---NDPATCMFWCAVALGGLTQGRPIDAVS 333
RCR+SAS ATGLVG QEN L FF C+G LPLT +ST+R+AMV +++ + G R G SG L AL+ +H + PA CM WCA+ALG L +G P++ V+
Sbjct: 164 RCRLSASPATGLVGMQENGFLGAFFGCLGILPLTTESTVRNAMVEVMM--RQCGGQAYSRTGG--SGMEGLAEDEEKGWCGGGALARRHTLPDHPAKCMMWCAIALGALMRGVPVERVT 278
BLAST of mRNA_M-pyrifera_M_contig13146.5863.1 vs. uniprot
Match: D8LU29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU29_ECTSI) HSP 1 Score: 86.7 bits (213), Expect = 1.950e-18 Identity = 50/113 (44.25%), Postives = 65/113 (57.52%), Query Frame = 1
Query: 1 RCRMSASLATGLVGTQENSLLNDFFSCMGFLPLTCQSTIRSAMVSLLISAK---MSGPPELDRIVGHASGANALVSASAAPALSSQHNDPATCMFWCAVALGGLTQGRPIDAV 330
R R SAS ATGLVG QEN+ L+DFF C+GF+PLT +S IR AMV ++ S+ G P GH + LS+ P+ C FWCAV LG L +G P+++V
Sbjct: 25 RFRWSASPATGLVGMQENACLSDFFGCIGFMPLTTRSHIRGAMVRMMTSSTPHHQPGAPHDSPAQGHFGSIFTEDGITPGNQLST---GPSACTFWCAVGLGALVKGSPVESV 134
BLAST of mRNA_M-pyrifera_M_contig13146.5863.1 vs. uniprot
Match: A0A6H5JUG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUG6_9PHAE) HSP 1 Score: 85.9 bits (211), Expect = 3.480e-17 Identity = 52/112 (46.43%), Postives = 68/112 (60.71%), Query Frame = 1
Query: 1 RCRMSASLATGLVGTQENSLLNDFFSCMGFLPLTCQSTIRSAMVSLLISA-KMSGPPELDRIVGHASGANALVSASAAPALSSQHNDPATCMFWCAVALGGLTQGRPIDAVS 333
R R+SAS ATGLVG QENS L FFS +GFLPLT + +R MV+L++SA + D V S +ALV + S + P TC FWCAVA+G L +G PI++ +
Sbjct: 48 RFRLSASPATGLVGMQENSFLTSFFSSVGFLPLTTRRDVRETMVTLMMSATRQQSIATEDCDVEENS--HALVLENKVCNTSEGDDFPKTCTFWCAVAIGALAKGHPIESTN 157
BLAST of mRNA_M-pyrifera_M_contig13146.5863.1 vs. uniprot
Match: A0A6H5L0K0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0K0_9PHAE) HSP 1 Score: 85.5 bits (210), Expect = 4.870e-17 Identity = 52/126 (41.27%), Postives = 70/126 (55.56%), Query Frame = 1
Query: 1 RCRMSASLATGLVGTQENSLLNDFFSCMGFLPLTCQSTIRSAMVSLLI------------SAKMSGPPELDRIVGHASGANALVSASAAPALSSQH---NDPATCMFWCAVALGGLTQGRPIDAVS 333
RCR+S+S ATGLVG EN L DFF C+G LPLT +ST+R+AMV +++ + M G E D G G AL+ +H + PA CM WCA+ALG L +G P++ V+
Sbjct: 165 RCRLSSSPATGLVGMPENGFLCDFFGCLGILPLTTESTVRNAMVEVMMRQCGGQVYSGTGGSGMEGLAE-DEEKGWRGGG----------ALARRHTLPDHPAKCMMWCAIALGALMRGVPVERVT 279
BLAST of mRNA_M-pyrifera_M_contig13146.5863.1 vs. uniprot
Match: D8LU24_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU24_ECTSI) HSP 1 Score: 84.3 bits (207), Expect = 1.200e-16 Identity = 45/112 (40.18%), Postives = 63/112 (56.25%), Query Frame = 1
Query: 1 RCRMSASLATGLVGTQENSLLNDFFSCMGFLPLTCQSTIRSAMVSLLISAKMSGPPELDRIVGHASGANALVSASAAPALSSQHNDPATCMFWCAVALGGLTQGRPIDAVSS 336
R R+SAS ATGLVG QEN+ L+DFF C+GFLPLT S IR MV ++ + P+ A+ S + P+ C FWCAV +G L +G P+++V++
Sbjct: 25 RFRLSASPATGLVGMQENTFLSDFFGCVGFLPLTTPSHIRGEMVRMMTLSTAPHRPDASYDSLDQGQFGAIFSEDGITTGNQLSAGPSACTFWCAVGVGALVKGSPVESVAN 136 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13146.5863.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig13146.5863.1 >prot_M-pyrifera_M_contig13146.5863.1 ID=prot_M-pyrifera_M_contig13146.5863.1|Name=mRNA_M-pyrifera_M_contig13146.5863.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=113bp MSASLATGLVGTQENSLLNDFFSCMGFLPLTCQSTIRSAMVSLLISAKMSback to top mRNA from alignment at M-pyrifera_M_contig13146:7768..8615+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig13146.5863.1 ID=mRNA_M-pyrifera_M_contig13146.5863.1|Name=mRNA_M-pyrifera_M_contig13146.5863.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=848bp|location=Sequence derived from alignment at M-pyrifera_M_contig13146:7768..8615+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig13146:7768..8615+ >mRNA_M-pyrifera_M_contig13146.5863.1 ID=mRNA_M-pyrifera_M_contig13146.5863.1|Name=mRNA_M-pyrifera_M_contig13146.5863.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=678bp|location=Sequence derived from alignment at M-pyrifera_M_contig13146:7768..8615+ (Macrocystis pyrifera P11B4 male)back to top |