mRNA_M-pyrifera_M_contig13146.5863.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13146.5863.1
Unique NamemRNA_M-pyrifera_M_contig13146.5863.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig13146.5863.1 vs. uniprot
Match: D7FTC5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTC5_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 2.500e-24
Identity = 62/144 (43.06%), Postives = 77/144 (53.47%), Query Frame = 1
Query:    1 RCRMSASLATGLVGTQENSLLNDFFSCMGFLPLTCQSTIRSAMVSLLISAKMSGPPELDRIVGHA------------------------SGANALVSASAAPALSSQH---------NDPATCMFWCAVALGGLTQGRPIDAVS 333
            R R+  SLATGLVGTQEN+ L DFF CMGFLPLTCQST+R AMV +L S+            GH                          G  ++VS + +P  S +          +DP+T MFWCAVALG LTQGRP+ +V+
Sbjct:   34 RGRLGMSLATGLVGTQENAFLGDFFGCMGFLPLTCQSTVREAMVRILFSSDNDNNKGFSSSTGHTWPHPVAPASAMMAMDEEKFCYGGGEGDMSIVSTARSPVSSMKQWEQQQQLSPSDPSTSMFWCAVALGALTQGRPVRSVA 177          
BLAST of mRNA_M-pyrifera_M_contig13146.5863.1 vs. uniprot
Match: D8LCV1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCV1_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 2.500e-20
Identity = 52/116 (44.83%), Postives = 68/116 (58.62%), Query Frame = 1
Query:    1 RCRMSASLATGLVGTQENSLLNDFFSCMGFLPLTCQSTIRSAMVSLLISAKMSGPPELDRIVGHASGANALVSASAAPALSSQHN----DPATCMFWCAVALGGLTQGRPIDAVSS 336
            RCR+SAS ATGLVG QEN+ L+DFF C+GFLPLT  S IR  MV++++    S                  V+     + +S  N    DP+ C FWCAVALG L +G PI++V+S
Sbjct:   10 RCRLSASPATGLVGMQENAFLSDFFGCVGFLPLTTPSHIRETMVTIMLPRASSQQSVFGDDCDEGGHYFEAVAPGGDLSKTSARNQFPMDPSACTFWCAVALGALAKGSPIESVTS 125          
BLAST of mRNA_M-pyrifera_M_contig13146.5863.1 vs. uniprot
Match: D8LCV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCV4_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 2.750e-20
Identity = 55/122 (45.08%), Postives = 70/122 (57.38%), Query Frame = 1
Query:    1 RCRMSASLATGLVGTQENSLLNDFFSCMGFLPLTCQSTIRSAMVSLLISAKMSGPPELDR--IVGHASGANALVSASAAP--------ALSSQHNDPATCMFWCAVALGGLTQGRPIDAVSS 336
            RCR+SAS ATGLV  QEN+ L+DFF C+GFLPLT  S IR  MV +++      PP   +  + G  S        + AP        A S    DP+ C FWCAVALG L +G PI++V+S
Sbjct:    6 RCRLSASPATGLVEMQENTFLSDFFGCIGFLPLTTPSQIRETMVKIMV------PPASSQQSVFGDGSDKRGHYFEAVAPGGDLSKISAGSQLPMDPSACTFWCAVALGALVKGSPIESVTS 121          
BLAST of mRNA_M-pyrifera_M_contig13146.5863.1 vs. uniprot
Match: D8LU09_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU09_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 8.950e-20
Identity = 51/114 (44.74%), Postives = 70/114 (61.40%), Query Frame = 1
Query:    1 RCRMSASLATGLVGTQENSLLNDFFSCMGFLPLTCQSTIRSAMVSLLISAKMSGPPELDRIVGHASGANALVSASAAPALSSQHN---DPATCMFWCAVALGGLTQGRPIDAVS 333
            R R++AS ATGLVG QEN+ L+DFF C+GF+PLT  S IR  MV ++ S     P +   I G   G  ++V A      S +     DP+TC FWCA+ALG L +G P+++V+
Sbjct:    6 RFRLTASPATGLVGMQENAFLSDFFGCVGFVPLTSHSHIRETMVKIMASP---APLQQSAIGGAFGGVGSMVRARCWNKASEKPQLPMDPSTCTFWCAIALGALAKGCPVESVA 116          
BLAST of mRNA_M-pyrifera_M_contig13146.5863.1 vs. uniprot
Match: A0A6H5JYW4_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYW4_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 3.310e-19
Identity = 51/114 (44.74%), Postives = 69/114 (60.53%), Query Frame = 1
Query:    1 RCRMSASLATGLVGTQENSLLNDFFSCMGFLPLTCQSTIRSAMVSLLISAKMSGPPELDRIVGHASGANALVSASAAPALSSQHN---DPATCMFWCAVALGGLTQGRPIDAVS 333
            R R+SAS ATGLVG QEN+ L+DFF C+GF+PLT  S IR  MV ++ S     P +   I G  S    +V A      S ++    D +TC FWCA+ALG L +G P+++V+
Sbjct:  110 RFRLSASPATGLVGMQENAFLSDFFGCVGFVPLTSHSHIRETMVRIMASP---APLQQSAIGGACSEVGTMVRAPCWNEASERNQLPMDASTCTFWCAIALGALAKGSPVESVA 220          
BLAST of mRNA_M-pyrifera_M_contig13146.5863.1 vs. uniprot
Match: A0A6H5L0W7_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0W7_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 1.170e-18
Identity = 53/119 (44.54%), Postives = 70/119 (58.82%), Query Frame = 1
Query:    1 RCRMSASLATGLVGTQENSLLNDFFSCMGFLPLTCQSTIRSAMVSLLISAKMSGPPELDRIVGHASGANALVSAS-----AAPALSSQH---NDPATCMFWCAVALGGLTQGRPIDAVS 333
            RCR+SAS ATGLVG QEN  L  FF C+G LPLT +ST+R+AMV +++  +  G     R  G  SG   L            AL+ +H   + PA CM WCA+ALG L +G P++ V+
Sbjct:  164 RCRLSASPATGLVGMQENGFLGAFFGCLGILPLTTESTVRNAMVEVMM--RQCGGQAYSRTGG--SGMEGLAEDEEKGWCGGGALARRHTLPDHPAKCMMWCAIALGALMRGVPVERVT 278          
BLAST of mRNA_M-pyrifera_M_contig13146.5863.1 vs. uniprot
Match: D8LU29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU29_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 1.950e-18
Identity = 50/113 (44.25%), Postives = 65/113 (57.52%), Query Frame = 1
Query:    1 RCRMSASLATGLVGTQENSLLNDFFSCMGFLPLTCQSTIRSAMVSLLISAK---MSGPPELDRIVGHASGANALVSASAAPALSSQHNDPATCMFWCAVALGGLTQGRPIDAV 330
            R R SAS ATGLVG QEN+ L+DFF C+GF+PLT +S IR AMV ++ S+      G P      GH          +    LS+    P+ C FWCAV LG L +G P+++V
Sbjct:   25 RFRWSASPATGLVGMQENACLSDFFGCIGFMPLTTRSHIRGAMVRMMTSSTPHHQPGAPHDSPAQGHFGSIFTEDGITPGNQLST---GPSACTFWCAVGLGALVKGSPVESV 134          
BLAST of mRNA_M-pyrifera_M_contig13146.5863.1 vs. uniprot
Match: A0A6H5JUG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUG6_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 3.480e-17
Identity = 52/112 (46.43%), Postives = 68/112 (60.71%), Query Frame = 1
Query:    1 RCRMSASLATGLVGTQENSLLNDFFSCMGFLPLTCQSTIRSAMVSLLISA-KMSGPPELDRIVGHASGANALVSASAAPALSSQHNDPATCMFWCAVALGGLTQGRPIDAVS 333
            R R+SAS ATGLVG QENS L  FFS +GFLPLT +  +R  MV+L++SA +       D  V   S  +ALV  +     S   + P TC FWCAVA+G L +G PI++ +
Sbjct:   48 RFRLSASPATGLVGMQENSFLTSFFSSVGFLPLTTRRDVRETMVTLMMSATRQQSIATEDCDVEENS--HALVLENKVCNTSEGDDFPKTCTFWCAVAIGALAKGHPIESTN 157          
BLAST of mRNA_M-pyrifera_M_contig13146.5863.1 vs. uniprot
Match: A0A6H5L0K0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0K0_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 4.870e-17
Identity = 52/126 (41.27%), Postives = 70/126 (55.56%), Query Frame = 1
Query:    1 RCRMSASLATGLVGTQENSLLNDFFSCMGFLPLTCQSTIRSAMVSLLI------------SAKMSGPPELDRIVGHASGANALVSASAAPALSSQH---NDPATCMFWCAVALGGLTQGRPIDAVS 333
            RCR+S+S ATGLVG  EN  L DFF C+G LPLT +ST+R+AMV +++             + M G  E D   G   G           AL+ +H   + PA CM WCA+ALG L +G P++ V+
Sbjct:  165 RCRLSSSPATGLVGMPENGFLCDFFGCLGILPLTTESTVRNAMVEVMMRQCGGQVYSGTGGSGMEGLAE-DEEKGWRGGG----------ALARRHTLPDHPAKCMMWCAIALGALMRGVPVERVT 279          
BLAST of mRNA_M-pyrifera_M_contig13146.5863.1 vs. uniprot
Match: D8LU24_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU24_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 1.200e-16
Identity = 45/112 (40.18%), Postives = 63/112 (56.25%), Query Frame = 1
Query:    1 RCRMSASLATGLVGTQENSLLNDFFSCMGFLPLTCQSTIRSAMVSLLISAKMSGPPELDRIVGHASGANALVSASAAPALSSQHNDPATCMFWCAVALGGLTQGRPIDAVSS 336
            R R+SAS ATGLVG QEN+ L+DFF C+GFLPLT  S IR  MV ++  +     P+            A+ S       +     P+ C FWCAV +G L +G P+++V++
Sbjct:   25 RFRLSASPATGLVGMQENTFLSDFFGCVGFLPLTTPSHIRGEMVRMMTLSTAPHRPDASYDSLDQGQFGAIFSEDGITTGNQLSAGPSACTFWCAVGVGALVKGSPVESVAN 136          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13146.5863.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTC5_ECTSI2.500e-2443.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LCV1_ECTSI2.500e-2044.83Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D8LCV4_ECTSI2.750e-2045.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LU09_ECTSI8.950e-2044.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JYW4_9PHAE3.310e-1944.74Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A6H5L0W7_9PHAE1.170e-1844.54Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LU29_ECTSI1.950e-1844.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JUG6_9PHAE3.480e-1746.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0K0_9PHAE4.870e-1741.27Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D8LU24_ECTSI1.200e-1640.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13146contigM-pyrifera_M_contig13146:7768..8615 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-21_000850.1
Exons2
Model size348
Cds size339
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13146.5863.1prot_M-pyrifera_M_contig13146.5863.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13146 7777..8615 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815809.0968685-UTR-M-pyrifera_M_contig13146:7767..77761622815809.0968685-UTR-M-pyrifera_M_contig13146:7767..7776Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13146 7768..7776 +
1692277580.7732215-UTR-M-pyrifera_M_contig13146:7767..77761692277580.7732215-UTR-M-pyrifera_M_contig13146:7767..7776Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig13146 7768..7776 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815809.1095316-CDS-M-pyrifera_M_contig13146:7776..78771622815809.1095316-CDS-M-pyrifera_M_contig13146:7776..7877Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13146 7777..7877 +
1692277580.7818844-CDS-M-pyrifera_M_contig13146:7776..78771692277580.7818844-CDS-M-pyrifera_M_contig13146:7776..7877Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13146 7777..7877 +
1622815809.1228871-CDS-M-pyrifera_M_contig13146:8377..86151622815809.1228871-CDS-M-pyrifera_M_contig13146:8377..8615Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13146 8378..8615 +
1692277580.7899563-CDS-M-pyrifera_M_contig13146:8377..86151692277580.7899563-CDS-M-pyrifera_M_contig13146:8377..8615Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13146 8378..8615 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13146.5863.1

>prot_M-pyrifera_M_contig13146.5863.1 ID=prot_M-pyrifera_M_contig13146.5863.1|Name=mRNA_M-pyrifera_M_contig13146.5863.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=113bp
MSASLATGLVGTQENSLLNDFFSCMGFLPLTCQSTIRSAMVSLLISAKMS
GPPELDRIVGHASGANALVSASAAPALSSQHNDPATCMFWCAVALGGLTQ
GRPIDAVSSSCS*
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mRNA from alignment at M-pyrifera_M_contig13146:7768..8615+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13146.5863.1 ID=mRNA_M-pyrifera_M_contig13146.5863.1|Name=mRNA_M-pyrifera_M_contig13146.5863.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=848bp|location=Sequence derived from alignment at M-pyrifera_M_contig13146:7768..8615+ (Macrocystis pyrifera P11B4 male)
AGATGCCGGATGAGCGCCTCGCTCGCAACGGGACTTGTGGGCACTCAGGA GAACAGCCTTCTGAACGACTTCTTCAGCTGCATGGGCTTTCTACCGCTCA CGTGCCAGAGGTGAGGTACCGACGGACAGGCGTCCTGACGGACTGGACCG TACGGTATCGTACCGTACCACAAAGCAGTACCGTAACGAGCAGTAACATA CCAGACAGCAGTACTGTACCGCACAGTACCGTACCACACAGTCCCGTGCC ACACAGTGTCGTGTCGTACAGTACCGTGCGTGCCGACGGGCACGCGTACC GACGGCCTGACTAGCAGTACCTTTGTCTGTTCCGCGAGCGTTGTCGGGCA TGCGAGTCGTGGCTTTTAGCTACTCATACAGCAGTAAATGTCGGTGTTAT TTGTATGCAACGCTTCTCGTTTTCTGCGTGTGGTCTGCGGTACGTAGTAG CCGTGCCACTCCACACCACACCACGCCACGCCACTCGGACACCGCTGCCA AGCGCTTCCGCGTCGGATTTAGTGAGATTTTTGGATTTCTTGCAAGAACC CTGACCGTCTCCTCCCCCCCCCCCCGCCCCCCTCTCTCTCTTTCTCTCTC ACTGCTGCAGCACCATCCGGTCAGCGATGGTATCTCTGCTCATTTCCGCC AAGATGTCCGGCCCACCCGAGCTCGATCGCATCGTCGGGCATGCGTCAGG TGCCAATGCCCTCGTGTCAGCATCGGCGGCACCCGCCCTGTCTTCCCAGC ACAACGACCCCGCTACCTGCATGTTCTGGTGTGCCGTCGCGCTTGGGGGG TTAACACAAGGCCGCCCGATCGACGCGGTAAGCTCTTCGTGCTCATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13146:7768..8615+

>mRNA_M-pyrifera_M_contig13146.5863.1 ID=mRNA_M-pyrifera_M_contig13146.5863.1|Name=mRNA_M-pyrifera_M_contig13146.5863.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=678bp|location=Sequence derived from alignment at M-pyrifera_M_contig13146:7768..8615+ (Macrocystis pyrifera P11B4 male)
ATGAGCGCCTCGCTCGCAACGGGACTTGTGGGCACTCAGGAGAACAGCCT
TCTGAACGACTTCTTCAGCTGCATGGGCTTTCTACCGCTCACGTGCCAGA
GATGAGCGCCTCGCTCGCAACGGGACTTGTGGGCACTCAGGAGAACAGCC
TTCTGAACGACTTCTTCAGCTGCATGGGCTTTCTACCGCTCACGTGCCAG
AGCACCATCCGGTCAGCGATGGTATCTCTGCTCATTTCCGCCAAGATGTC
CGGCCCACCCGAGCTCGATCGCATCGTCGGGCATGCGTCAGGTGCCAATG
CCCTCGTGTCAGCATCGGCGGCACCCGCCCTGTCTTCCCAGCACAACGAC
CCCGCTACCTGCATGTTCTGGTGTGCCGTCGCGCTTGGGGGGTTAACACA
AGGCCGCCCGATCGACGCGGTAAGCTCTTCGTGCTCATGACACCATCCGG
TCAGCGATGGTATCTCTGCTCATTTCCGCCAAGATGTCCGGCCCACCCGA
GCTCGATCGCATCGTCGGGCATGCGTCAGGTGCCAATGCCCTCGTGTCAG
CATCGGCGGCACCCGCCCTGTCTTCCCAGCACAACGACCCCGCTACCTGC
ATGTTCTGGTGTGCCGTCGCGCTTGGGGGGTTAACACAAGGCCGCCCGAT
CGACGCGGTAAGCTCTTCGTGCTCATGA
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