mRNA_M-pyrifera_M_contig13110.5850.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig13110.5850.1
Unique NamemRNA_M-pyrifera_M_contig13110.5850.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig13110.5850.1 vs. uniprot
Match: D8LR24_ECTSI (Fe2OG dioxygenase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR24_ECTSI)

HSP 1 Score: 150 bits (378), Expect = 2.480e-40
Identity = 70/89 (78.65%), Postives = 77/89 (86.52%), Query Frame = 1 
Query:    1 KANGGWTTSRHYAVPTTDIPVHALKETVLPWFHSLLSERLLPALAEHFELRGGAERVSVHDAFIVRYEEGKQRHLPLHRDQSTHSFTVS 267
            +ANGGWTTSRHYAVPTTD+PVHALK T LPWF SL+ ERL PALA+ F L  G  RV VHDAF+VRYEEGKQRHLPLHRDQSTHSFT++
Sbjct:  471 QANGGWTTSRHYAVPTTDLPVHALKST-LPWFRSLVRERLFPALAKRFNLAAGPRRVFVHDAFVVRYEEGKQRHLPLHRDQSTHSFTIA 558
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BLAST of mRNA_M-pyrifera_M_contig13110.5850.1 vs. uniprot
Match: A0A6H5JE10_9PHAE (Fe2OG dioxygenase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE10_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 8.530e-39
Identity = 67/89 (75.28%), Postives = 76/89 (85.39%), Query Frame = 1 
Query:    1 KANGGWTTSRHYAVPTTDIPVHALKETVLPWFHSLLSERLLPALAEHFELRGGAERVSVHDAFIVRYEEGKQRHLPLHRDQSTHSFTVS 267
            + NGGWTTSRHYAVPTTD+PVH LK T LPWF SL+ +RL PALA+ F L  G +RV VHDAF+VRYEEGKQRHLPLHRDQSTHSFT++
Sbjct:  655 QGNGGWTTSRHYAVPTTDLPVHVLKST-LPWFRSLVRKRLFPALAKRFNLAAGPQRVFVHDAFVVRYEEGKQRHLPLHRDQSTHSFTIA 742
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BLAST of mRNA_M-pyrifera_M_contig13110.5850.1 vs. uniprot
Match: A0A7S2LPG1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LPG1_9STRA)

HSP 1 Score: 109 bits (272), Expect = 3.090e-27
Identity = 51/88 (57.95%), Postives = 69/88 (78.41%), Query Frame = 1 
Query:   13 GWTTSRHYAVPTTDIPVHALKETVLPWFHSLLSERLLPALAEHF---ELRGGAERVSVHDAFIVRYEEGKQRHLPLHRDQSTHSFTVS 267
            GWTTSRHYAVPTTD+P+H + + +L WF+SL+++R+ P LA  F   E+   A R+ VHDAFIVRY+   QRHLP+HRD+ST+SFT++
Sbjct:   74 GWTTSRHYAVPTTDLPIHGVPK-LLDWFNSLMADRIRPLLALQFGEAEVGKSASRLMVHDAFIVRYDAQMQRHLPVHRDESTYSFTIA 160
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BLAST of mRNA_M-pyrifera_M_contig13110.5850.1 vs. uniprot
Match: A0A836CK11_9STRA (Fe2OG dioxygenase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK11_9STRA)

HSP 1 Score: 105 bits (261), Expect = 2.170e-24
Identity = 53/86 (61.63%), Postives = 60/86 (69.77%), Query Frame = 1 
Query:   13 GWTTSRHYAVPTTDIPVHALKETVLPWFHSLLSERLLPALAEHFELRG-GAERVSVHDAFIVRYEEGKQRHLPLHRDQSTHSFTVS 267
            GWTTSRHYAVPTTD+PVHA+   +  WF +LL ERL P L+  F  R   A    VHDAF+VRY    QRHLPLH DQSTHS TV+
Sbjct:  407 GWTTSRHYAVPTTDLPVHAVP-ALRAWFCALLRERLFPLLSAQFAPRARAAHSWHVHDAFVVRYSHAAQRHLPLHADQSTHSLTVA 491
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BLAST of mRNA_M-pyrifera_M_contig13110.5850.1 vs. uniprot
Match: A0A6U6BVH0_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A6U6BVH0_GUITH)

HSP 1 Score: 95.5 bits (236), Expect = 1.710e-22
Identity = 52/90 (57.78%), Postives = 62/90 (68.89%), Query Frame = 1 
Query:   10 GGWTTSRHYAVPTTDIPVHALKETVLPWFHSLLSERLLPALAEHFELRGGAER---VSVHDAFIVRYE-EGKQRHLPLHRDQSTHSFTVS 267
            GGWTTSRHYAVPTTD+PVH   E +L WF   L+ RL P LA  +      E+   V + DAFIV+Y   G QRHLP+HRDQSTHSFT++
Sbjct:    8 GGWTTSRHYAVPTTDLPVHEHDE-ILCWFRKHLACRLGPLLALQYGADMVGEKGCFVRIFDAFIVKYAASGGQRHLPVHRDQSTHSFTIA 96
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BLAST of mRNA_M-pyrifera_M_contig13110.5850.1 vs. uniprot
Match: A0A7S0SFI0_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SFI0_9CHLO)

HSP 1 Score: 92.0 bits (227), Expect = 1.040e-21
Identity = 48/90 (53.33%), Postives = 61/90 (67.78%), Query Frame = 1 
Query:    4 ANGGWTTSRHYAVPTTDIPVHALKETVLPWFHSLLSERLLPALAEHF--ELRGGAERVSVHDAFIVRYEEGKQRHLPLHRDQSTHSFTVS 267
            A GGW  SRHYAVPTTDIP+HA+   +  W ++L+ ++L P LA     E+RG A+RV VHDAF+VRY    Q HLP H DQS  S T++
Sbjct:    3 ARGGWPPSRHYAVPTTDIPIHAIPALLSQW-NALMRDKLAPLLAAACPEEVRG-AQRVRVHDAFVVRYSAAAQHHLPTHADQSLLSVTLA 90
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BLAST of mRNA_M-pyrifera_M_contig13110.5850.1 vs. uniprot
Match: A0A7S2PNH6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PNH6_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.540e-21
Identity = 40/85 (47.06%), Postives = 59/85 (69.41%), Query Frame = 1 
Query:   13 GWTTSRHYAVPTTDIPVHALKETVLPWFHSLLSERLLPALAEHFELRGGAERVSVHDAFIVRYEEGKQRHLPLHRDQSTHSFTVS 267
            GWTT+RHYAVPTTDIP+H + +    +   L S ++ P L +  +L G  + + +HDAF+VRY+  KQR+LP H D+S+HSF ++
Sbjct:   15 GWTTTRHYAVPTTDIPIHEITKLHDLFTKKLWSSKIRPLLRQQLKLNGNRQ-ILIHDAFVVRYDSSKQRYLPPHLDESSHSFIIA 98
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BLAST of mRNA_M-pyrifera_M_contig13110.5850.1 vs. uniprot
Match: A0A7S0D5L2_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0D5L2_MICPS)

HSP 1 Score: 90.5 bits (223), Expect = 5.240e-21
Identity = 48/90 (53.33%), Postives = 60/90 (66.67%), Query Frame = 1 
Query:    4 ANGGWTTSRHYAVPTTDIPVHALKETVLPWFHSLLSERLLPALAEHFE--LRGGAERVSVHDAFIVRYEEGKQRHLPLHRDQSTHSFTVS 267
            A GGWTT+RHYAVPTTD+PVH +  T+LP +++ LS  L P L   F   +R G   V VHDAF+VRY+   QR LP H DQS  S T++
Sbjct:   56 ARGGWTTARHYAVPTTDLPVHEIP-TLLPLWNAFLSSSLGPFLHACFPTTVRAGGSNVRVHDAFVVRYDAEAQRFLPAHVDQSEISVTLA 144
[Close]
BLAST of mRNA_M-pyrifera_M_contig13110.5850.1 vs. uniprot
Match: A0A7S3T9C2_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3T9C2_EMIHU)

HSP 1 Score: 91.3 bits (225), Expect = 5.930e-21
Identity = 48/87 (55.17%), Postives = 59/87 (67.82%), Query Frame = 1 
Query:    7 NGGWTTSRHYAVPTTDIPVHALKETVLPWFHSLLSERLLPALAEHFELRGGAERVSVHDAFIVRYE-EGKQRHLPLHRDQSTHSFTV 264
            +GGWTTSRH AVPTTD+PVH + E +L WF+  ++ R+ P LA  F  R  A  + VHDAF+VRY   G Q HLPLH D+S  S TV
Sbjct:   21 SGGWTTSRHRAVPTTDVPVHEVPE-LLRWFNHAMAGRIAPLLAAQF--RVAAADIRVHDAFLVRYSASGGQAHLPLHTDESVLSLTV 104
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BLAST of mRNA_M-pyrifera_M_contig13110.5850.1 vs. uniprot
Match: A0A7S0KYC1_9STRA (Hypothetical protein n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0KYC1_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 7.800e-21
Identity = 45/86 (52.33%), Postives = 58/86 (67.44%), Query Frame = 1 
Query:   13 GWTTSRHYAVPTTDIPVHALKETVLPWFHSLLSERLLPALAEHFELRGGAERVSVHDAFIVRYEEG-KQRHLPLHRDQSTHSFTVS 267
            GWTTSRHYAVPTTD+PVH +   V  WF +L+  ++ P L+  F    G +R  VHDAF+VRYE      HLPLH D+S+HSF ++
Sbjct:  135 GWTTSRHYAVPTTDVPVHTVPSLV-QWFMNLMETKVCPLLSRQFAGSSGNKRWFVHDAFVVRYEATMSNNHLPLHVDESSHSFVLA 219
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig13110.5850.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LR24_ECTSI2.480e-4078.65Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A6H5JE10_9PHAE8.530e-3975.28Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A7S2LPG1_9STRA3.090e-2757.95Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A836CK11_9STRA2.170e-2461.63Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A6U6BVH0_GUITH1.710e-2257.78Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
A0A7S0SFI0_9CHLO1.040e-2153.33Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]
A0A7S2PNH6_9STRA1.540e-2147.06Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A7S0D5L2_MICPS5.240e-2153.33Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
A0A7S3T9C2_EMIHU5.930e-2155.17Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
A0A7S0KYC1_9STRA7.800e-2152.33Hypothetical protein n=1 Tax=Asterionellopsis glac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig13110contigM-pyrifera_M_contig13110:6578..8499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score151.0
Seed ortholog evalue2.7e-34
Seed eggNOG ortholog2880.D8LR24
Hectar predicted targeting categoryother localisation
EggNOG free text desc.procollagen-lysine 5-dioxygenase activity
EggNOG OGsKOG1971@1,KOG1971@2759
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size273
Cds size273
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815807.8835418-CDS-M-pyrifera_M_contig13110:6577..66871622815807.8835418-CDS-M-pyrifera_M_contig13110:6577..6687Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13110 6578..6687 +
1692277580.0272832-CDS-M-pyrifera_M_contig13110:6577..66871692277580.0272832-CDS-M-pyrifera_M_contig13110:6577..6687Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13110 6578..6687 +
1622815807.8976996-CDS-M-pyrifera_M_contig13110:8336..84991622815807.8976996-CDS-M-pyrifera_M_contig13110:8336..8499Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13110 8337..8499 +
1692277580.0408623-CDS-M-pyrifera_M_contig13110:8336..84991692277580.0408623-CDS-M-pyrifera_M_contig13110:8336..8499Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig13110 8337..8499 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig13110.5850.1prot_M-pyrifera_M_contig13110.5850.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig13110 6578..8499 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig13110.5850.1

>prot_M-pyrifera_M_contig13110.5850.1 ID=prot_M-pyrifera_M_contig13110.5850.1|Name=mRNA_M-pyrifera_M_contig13110.5850.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=91bp
KANGGWTTSRHYAVPTTDIPVHALKETVLPWFHSLLSERLLPALAEHFEL
RGGAERVSVHDAFIVRYEEGKQRHLPLHRDQSTHSFTVST*
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mRNA from alignment at M-pyrifera_M_contig13110:6578..8499+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig13110.5850.1 ID=mRNA_M-pyrifera_M_contig13110.5850.1|Name=mRNA_M-pyrifera_M_contig13110.5850.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1922bp|location=Sequence derived from alignment at M-pyrifera_M_contig13110:6578..8499+ (Macrocystis pyrifera P11B4 male)
AAGGCGAACGGAGGCTGGACCACCTCCCGACACTACGCCGTGCCCACGAC
CGACATCCCCGTGCACGCGCTGAAGGAGACCGTCCTGCCGTGGTTCCACT
CGCTCCTCAGGTCAGAGCGAGGTTTTGCAGCCGGTGCAATGGCGTTTTAG
TTTGTTACTTTGTTTGTTTTTTCTGTGTGGGGGGGGGTGTTTATTTCTCC
CCGCACGGTCCCGCTCGCTCCTCAGGTCATGGGTTTTGTTGGACGATGGG
ATTGCGTTTTTTTCCGGGGGGGGGAAAGGTGTCGGTGTTTACCTGCCCGC
ACGGTCCCGCTCGATCGTGGGTCGTCAGGACAGATTGGGGTTTTCTAGGC
GATAGGACGTTTTTTTTTTTCAGGGGGATCGGTGTTTGTTTACGCGAGCG
GTCTCCCGCTCGCTCCTGAGGTGAGAGAAGGGATTCGCAGACGGTGGGGG
TGGCGTGTTTTTGTGCTGGATGCTGTTTTCCGTTTGATTCGTGTGTTGGG
GGGGGGTGCGGGGTCGTTTTTTTTCATGTTTGTTGCGCTTTTACCCCCTG
GCGGCTCTGTTTTTCATCGACCCCGCTTTGCTTGCTTGGCCTGAGTGTGT
GGTTGCGTGGTTTGGTTTTGATTTGGTTTGGTTTGGTGTGGTTTGATTTG
GTTTGATTTGGTTGGTTTGGTTAGTTTTGGTTAGTTTGGCTGGTTTTGTT
CGACGGCCTCCTCGCCCGAGCAAAAGCCCAGCACTTTCGTTGCTGCTTTT
GTGTCGCTGGTTGATGTCGTTGTTACTGCTGTAGTGCTTTAATCGTGCGG
CACCAGCCCCACCCGTAGGTCCTACGACTATATGGCCATGCATGATATTA
GTCATTTTTTTTTGGAAGTTAAATGTTGCGCATCGTAATCTACTTTGCGG
TGTACCGGGCAGAGTTTTTACCGTGGGAACGGGGTTGGCTCGCATACGCA
CAACTCCAAAGGTCGTCAGCGTACCAGTACCACTACCAATGACTGGTAAT
CCGTCAATGATTCGCCAGTACCGGTCGCTTTAAATGATCATGTACCTGGA
GTACTTGAAGCTGAAAATGACTGCTGTGTACCTAGAGCACTTAAAAGCTG
AAAGTAACGGAGTGCCTGCCTGCCAGTACCCGGATGAAAAGCACTGAGTG
CTTGGAGTACTGAGTATCTGCCGGTACCTCGAGTATCAAGACCCGAAATG
ACTGGCACTGGGTGGTGTACTGGAACTCGGACGACCTTTGGAGTTGTGCG
TGTGCGAGCCAACCCCGATTTCACCGCAACTCTGCCGCATACACTGCTAA
ATAGTTCACGATAAGCAACAATTAACTTCCTAAAAAATTGACTCATACGT
ACGAACGAGTGGTTTGCCCCCCATCGTCGGCCATTTCAGTGCCTGTTGCC
TCGCAGGATCTTTGGTTGGATCTGTGTACCGTTACAGGTCCTGCACAACC
TCCCTTATCGGCAGGCGAAGAACTACAGTAGATGATCTACAGATAGATAG
ATCGATAGATCATGATCTGTCTGTCCGAGACGTGCAAATATGACCCGTTT
CCTTGGTTGGATCTGTACTGTGCAGGTCCTGCACAACCTCCCTTAACGGC
AGGTGAAGAACTACAATAGATGATCTACAGATGGATAGATCATGACCTGT
CTGTCCGAGGCGTGCAAACAAATATGACCGACCACCCGACCGAAAAAAAA
CAACCAACCAACTCAACCAACCGATCGATGAATGGATGCAACAACACACA
CACACACAGCGAGCGCCTTCTTCCGGCGCTGGCCGAGCACTTCGAGCTTC
GGGGAGGCGCTGAGAGGGTTTCCGTTCACGACGCGTTCATCGTGAGGTAC
GAGGAGGGGAAGCAGCGGCATCTTCCGCTGCACCGCGACCAGTCCACCCA
CTCCTTCACGGTGAGCACGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig13110:6578..8499+

>mRNA_M-pyrifera_M_contig13110.5850.1 ID=mRNA_M-pyrifera_M_contig13110.5850.1|Name=mRNA_M-pyrifera_M_contig13110.5850.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=546bp|location=Sequence derived from alignment at M-pyrifera_M_contig13110:6578..8499+ (Macrocystis pyrifera P11B4 male)
AAGGCGAACGGAGGCTGGACCACCTCCCGACACTACGCCGTGCCCACGAC
CGACATCCCCGTGCACGCGCTGAAGGAGACCGTCCTGCCGTGGTTCCACT
CGCTCCTCAGAAGGCGAACGGAGGCTGGACCACCTCCCGACACTACGCCG
TGCCCACGACCGACATCCCCGTGCACGCGCTGAAGGAGACCGTCCTGCCG
TGGTTCCACTCGCTCCTCAGCGAGCGCCTTCTTCCGGCGCTGGCCGAGCA
CTTCGAGCTTCGGGGAGGCGCTGAGAGGGTTTCCGTTCACGACGCGTTCA
TCGTGAGGTACGAGGAGGGGAAGCAGCGGCATCTTCCGCTGCACCGCGAC
CAGTCCACCCACTCCTTCACGGTGAGCACGTAGCGAGCGCCTTCTTCCGG
CGCTGGCCGAGCACTTCGAGCTTCGGGGAGGCGCTGAGAGGGTTTCCGTT
CACGACGCGTTCATCGTGAGGTACGAGGAGGGGAAGCAGCGGCATCTTCC
GCTGCACCGCGACCAGTCCACCCACTCCTTCACGGTGAGCACGTAG
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